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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962912
Clone id TST39A01NGRL0015_C02
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_C02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATCTGTGTGTGTGGGTGTCTATGTGAGACAGGCAGCCTGGGATATAAACAGCAACACCTT
GGATGCTCTCTCGTGTGCGAGCCTCTGTGTGCGGCGCTCATGCCTCCGGCGCTGGTCCTC
CTCTCCGCTGTTCCCCAATCGCCTGGCTATGCCCAGCTCTGAACTTCCTTTGTGCCGCTC
TACCTCACGTGCTTCGTCTTCTCCCTCTTAGCCTCTCACTATAGCTTACTCTTACCGCCC
CGCGCGGCCTTCTGATACAACCTTCACAAGGGACCAGCCCAACGTGTACCAGCTGGACTT
GGAGGATCAGGTGAGCCAAATTGATATGGATCCCAACAAGATGCTACAGCCGGGAGACCC
CTCTTCTATGCAGGCCATTATTAAGGATGTCATGCCTGTAGGTTACTTCCTCTCTCTGCC
CACACGCGGAGATGGGTATCTTCCATCAGATGACGTGGGCTTTACAGGTGGGCTTGCTAT
TCTGCGCACGCTTTTCAAGGAGGGTCAAGATATTACTGTGCGCATTGTTTGTCGCGGTGG
GGCATGAAGGGAGATTGTTTCTGTGAAAAAGCCTGAGTTTGCCCCTCC
■■Homology search results ■■ -
sp_hit_id P34201
Definition sp|P34201|FLIQ_PECCC Flagellar biosynthetic protein fliQ OS=Pectobacterium carotovorum subsp. carotovorum
Align length 68
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962912|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_C02, 5'
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34201|FLIQ_PECCC Flagellar biosynthetic protein fliQ OS=Pect...    32   2.4  
sp|Q3ASI5|ARGB_CHLCH Acetylglutamate kinase OS=Chlorobium chloro...    31   4.0  
sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus...    31   5.2  
sp|Q8BKK5|ZN689_MOUSE Zinc finger protein 689 OS=Mus musculus GN...    31   5.2  
sp|Q96CS4|ZN689_HUMAN Zinc finger protein 689 OS=Homo sapiens GN...    31   5.2  
sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7...    31   5.3  
sp|Q0IBR6|COBQ_SYNS3 Cobyric acid synthase OS=Synechococcus sp. ...    30   6.8  
sp|Q9ZK11|PNP_HELPJ Polyribonucleotide nucleotidyltransferase OS...    30   8.9  
sp|Q9JLL0|CRIM1_MOUSE Cysteine-rich motor neuron 1 protein OS=Mu...    30   8.9  

>sp|P34201|FLIQ_PECCC Flagellar biosynthetic protein fliQ
           OS=Pectobacterium carotovorum subsp. carotovorum GN=fliQ
           PE=3 SV=1
          Length = 89

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 34  SLGYKQQHLGCSLVCEPLCAALMPPALV-LLSAVPQSPGYAQL*TSFVPLYLTCFVFSLL 210
           +LGY+   +  +L   PL AAL+   L+ LL A  Q     ++  SF+P  LT F   ++
Sbjct: 8   ALGYEAMKVALALAAPPLMAALLSGLLISLLQAATQ---INEMTLSFIPKILTVFFTLVI 64

Query: 211 ASHYSLLL 234
           A  + L L
Sbjct: 65  AGPWMLNL 72


>sp|Q3ASI5|ARGB_CHLCH Acetylglutamate kinase OS=Chlorobium
           chlorochromatii (strain CaD3) GN=argB PE=3 SV=1
          Length = 286

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
 Frame = +2

Query: 251 SDTTFTRDQPNVYQLDLEDQVSQIDMDPNKMLQPGDPSSMQAIIKDVMPVGY-------- 406
           +DT      PN  QL L  +V QI+ D   +L      S   +I  + PVG+        
Sbjct: 132 ADTIKAHPHPNAEQLGLVGEVEQINTDYIDLL------SQAGLIPVIAPVGFDCDGNLYN 185

Query: 407 --------FLSLPTRGDGYL-PSDDVGFTGGLAILRTLFK-EGQDITVRIVCRGGA*REI 556
                    +S+  + +  +  SD  G   G  IL+T+ K E  D+  R +  GG   ++
Sbjct: 186 INADDAASSISIALKAEKLIYVSDVAGIQVGDKILKTISKAEAADLIERGIISGGMIPKV 245

Query: 557 VS 562
           VS
Sbjct: 246 VS 247


>sp|Q99PJ7|ZN689_RAT Zinc finger protein 689 OS=Rattus norvegicus
           GN=Znf689 PE=2 SV=1
          Length = 500

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 140 DWGTAERRTSAGGMSAAHRGSHTREHPRCC------CLYPRLPVSHRHPHT 6
           D G A RR+   G  A HR +HT E    C        YP L  SHR  H+
Sbjct: 377 DCGRAFRRS---GSLAIHRSTHTEEKLHACDDCGRRFAYPSLLASHRRVHS 424


>sp|Q8BKK5|ZN689_MOUSE Zinc finger protein 689 OS=Mus musculus
           GN=Znf689 PE=2 SV=1
          Length = 500

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 140 DWGTAERRTSAGGMSAAHRGSHTREHPRCC------CLYPRLPVSHRHPHT 6
           D G A RR+   G  A HR +HT E    C        YP L  SHR  H+
Sbjct: 377 DCGRAFRRS---GSLAIHRSTHTEEKLHACDDCGRRFAYPSLLASHRRVHS 424


>sp|Q96CS4|ZN689_HUMAN Zinc finger protein 689 OS=Homo sapiens
           GN=ZNF689 PE=1 SV=1
          Length = 500

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 140 DWGTAERRTSAGGMSAAHRGSHTREHPRCC------CLYPRLPVSHRHPHT 6
           D G A RR+   G  A HR +HT E    C        YP L  SHR  H+
Sbjct: 377 DCGRAFRRS---GSLAIHRSTHTEEKLHACDDCGRRFAYPSLLASHRRVHS 424


>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7
           OS=Gallus gallus GN=CHD7 PE=2 SV=1
          Length = 3011

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 265 HKGPAQRVPAGLGGSGEPN*YGSQQDATAGRPLFYAGHY*GCHACRL 405
           H  P  +VP G G SG+   Y S Q+   G+P   +G   G  A ++
Sbjct: 106 HNPPVPQVPHGSGASGQMGVYPSMQNERHGQPFVDSGSMWGPRAVQV 152


>sp|Q0IBR6|COBQ_SYNS3 Cobyric acid synthase OS=Synechococcus sp.
           (strain CC9311) GN=cobQ PE=3 SV=1
          Length = 508

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 508 LTLLEKRAQNSKPTCKAHVI*WKIPISACGQREEVTYRHDILNNGLHRR 362
           LT +   ++  KP C+   + W  P S  G     TY H +  +G  RR
Sbjct: 408 LTTINNASETCKPLCRDEELGWVKPFSDHGGLVAGTYLHGVFESGPWRR 456


>sp|Q9ZK11|PNP_HELPJ Polyribonucleotide nucleotidyltransferase
           OS=Helicobacter pylori J99 GN=pnp PE=3 SV=1
          Length = 688

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 368 MQAIIKDVMPVGYFLSLPTRGDGYLPSDDVGFTGGLAILRTLFKEGQDITVRIV 529
           ++A +K ++  G FLSLP  G+G L   +      +   + + KEG  I  R++
Sbjct: 629 LEAQVKRIVDFGAFLSLPKGGEGLLRKQN------MDKCQVILKEGDSIRCRVI 676


>sp|Q9JLL0|CRIM1_MOUSE Cysteine-rich motor neuron 1 protein OS=Mus
            musculus GN=Crim1 PE=2 SV=2
          Length = 1037

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 317  QIDMDPNKMLQPGDPSSMQAIIKDVMPVGYFLSL 418
            Q+D   N  L PG+ SS+ +I+  V+P+   LS+
Sbjct: 921  QVDYRDNNRLHPGEDSSLDSIVSVVVPIIICLSI 954
tr_hit_id A3U684
Definition tr|A3U684|A3U684_9FLAO Peptidoglycan-binding LysM OS=Croceibacter atlanticus HTCC2559
Align length 70
Score (bit) 36.2
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962912|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_C02, 5'
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3U684|A3U684_9FLAO Peptidoglycan-binding LysM OS=Croceibacte...    36   1.4  
tr|Q26995|Q26995_TOXGO Peptidyl-prolyl cis-trans isomerase (Frag...    35   4.1  
tr|B6KIF6|B6KIF6_TOXGO 20 kDa cyclophilin OS=Toxoplasma gondii M...    35   4.1  
tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis G...    34   5.3  
tr|A0M6J1|A0M6J1_GRAFK Membrane-bound lytic murein transglycosyl...    34   5.3  
tr|Q8S7K1|Q8S7K1_ORYSA Putative uncharacterized protein OSJNBa00...    34   5.3  
tr|Q7XF93|Q7XF93_ORYSJ Phosphate-induced protein 1 conserved reg...    34   5.3  
tr|A2Z6M6|A2Z6M6_ORYSI Putative uncharacterized protein OS=Oryza...    34   5.3  
tr|A7EEZ0|A7EEZ0_SCLS1 Putative uncharacterized protein OS=Scler...    34   5.3  
tr|B4FAY2|B4FAY2_MAIZE Putative uncharacterized protein OS=Zea m...    34   7.1  
tr|Q5B491|Q5B491_EMENI Putative uncharacterized protein OS=Emeri...    33   9.2  

>tr|A3U684|A3U684_9FLAO Peptidoglycan-binding LysM OS=Croceibacter
           atlanticus HTCC2559 GN=CA2559_03310 PE=4 SV=1
          Length = 523

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +2

Query: 227 YSYRPARPSDTTFTRDQPNVYQLDLEDQVSQIDMDPNKMLQPGDPSSMQAIIKDVMPVGY 406
           + ++P RP    F  D  ++  +   DQ+S++    + ML+  +PS    II  +    Y
Sbjct: 308 HGFQPKRPEIPYFKTDTIHIKDMITFDQISEVTQLDSGMLEFLNPSYKLGIIPKIEDEAY 367

Query: 407 FLSLPTRGDG 436
           +L LPT   G
Sbjct: 368 YLRLPTEQAG 377


>tr|Q26995|Q26995_TOXGO Peptidyl-prolyl cis-trans isomerase
           (Fragment) OS=Toxoplasma gondii PE=2 SV=1
          Length = 347

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
 Frame = +1

Query: 85  LCAALMPPALVLLSAVPQSPGYAQL*TSFVPLYLTCFVFSLLASHYSLLLPPRAAF*YNL 264
           LCA  +P   + + AV     Y +  T   P  L C  F L +S  S +  PR  F  ++
Sbjct: 135 LCAVFVP---ITVGAVR----YTKHPTRLRPGSLPCVAFCLYSSRLSTMPNPRVFFDISI 187

Query: 265 HKGPAQRVPAGLGGSGEPN--------*YGSQQDATAGRPLFYAGHY*GCHACRLLP 411
            K PA R+   L     P           G +    +G+PL+Y     GC   R++P
Sbjct: 188 DKKPAGRIEFELFADVVPKTAENFRALCTGEKGTGRSGKPLYYK----GCPFHRIIP 240


>tr|B6KIF6|B6KIF6_TOXGO 20 kDa cyclophilin OS=Toxoplasma gondii ME49
           GN=TGME49_005700 PE=4 SV=1
          Length = 348

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
 Frame = +1

Query: 85  LCAALMPPALVLLSAVPQSPGYAQL*TSFVPLYLTCFVFSLLASHYSLLLPPRAAF*YNL 264
           LCA  +P   + + AV     Y +  T   P  L C  F L +S  S +  PR  F  ++
Sbjct: 136 LCAVFVP---ITVGAVR----YTKHPTRLRPGSLPCVAFCLYSSRLSTMPNPRVFFDISI 188

Query: 265 HKGPAQRVPAGLGGSGEPN--------*YGSQQDATAGRPLFYAGHY*GCHACRLLP 411
            K PA R+   L     P           G +    +G+PL+Y     GC   R++P
Sbjct: 189 DKKPAGRIEFELFADVVPKTAENFRALCTGEKGTGRSGKPLYYK----GCPFHRIIP 241


>tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis
           GN=TTpA012i10.1-001 PE=2 SV=1
          Length = 417

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
 Frame = +2

Query: 275 QPNVYQLDLEDQVSQIDMDPNKMLQPGDPSSMQAIIKDVMPVGYFLSLPTRGDGYLPSDD 454
           +P V  + +E  + Q   + ++ LQ G P +M   I+D+   G    LP RG G  P+ +
Sbjct: 54  EPKVQPVQIE--IQQRTPEISEELQ-GYPGTMTDAIRDI---GVKQPLPARGVGEKPATE 107

Query: 455 VGFTGGLAILRTL----FKEGQDITVRIVCRGG 541
            G+ G  AIL  +     K+G ++ + +V + G
Sbjct: 108 FGYVGIDAILEQMRKKAMKQGFELNIMVVGQSG 140


>tr|A0M6J1|A0M6J1_GRAFK Membrane-bound lytic murein transglycosylase
           OS=Gramella forsetii (strain KT0803) GN=GFO_3293 PE=4
           SV=1
          Length = 528

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = +2

Query: 227 YSYRPARPSDTTFTRDQPNVYQLDLEDQVSQIDMDPNKMLQPGDPSSMQAIIKDVMPVGY 406
           ++++P++P    F  D   V QL   DQ++++     +MLQ  +PS    II  V    Y
Sbjct: 311 HNFQPSKPDVVYFETDTIQVKQLLNFDQITKVTGVEKEMLQFLNPSFKLDIIPFVEDEKY 370

Query: 407 FLSLPTRGDGYLPSDD 454
            L LP +  G   S++
Sbjct: 371 SLRLPKQATGKFVSNE 386


>tr|Q8S7K1|Q8S7K1_ORYSA Putative uncharacterized protein
           OSJNBa0095C06.7 OS=Oryza sativa GN=OSJNBa0095C06.7 PE=4
           SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 329 PYQFGSPDP-PSPAGTRWAGPL*RLYQKAARGG 234
           P+ FG+P P P P   RW G + R  +KA RGG
Sbjct: 85  PHTFGAPGPAPPPTVARWWGTVERYVRKAGRGG 117


>tr|Q7XF93|Q7XF93_ORYSJ Phosphate-induced protein 1 conserved region
           containing protein OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g22990 PE=4 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 329 PYQFGSPDP-PSPAGTRWAGPL*RLYQKAARGG 234
           P+ FG+P P P P   RW G + R  +KA RGG
Sbjct: 85  PHTFGAPGPAPPPTVARWWGTVERYVRKAGRGG 117


>tr|A2Z6M6|A2Z6M6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33308 PE=4 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 329 PYQFGSPDP-PSPAGTRWAGPL*RLYQKAARGG 234
           P+ FG+P P P P   RW G + R  +KA RGG
Sbjct: 85  PHTFGAPGPAPPPTVARWWGTVERYVRKAGRGG 117


>tr|A7EEZ0|A7EEZ0_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_03881 PE=4 SV=1
          Length = 655

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 158 SWA*PGDWGTAERRTSAGGMSAAHRGSHTREHPRC 54
           SW    + G A RR  +GG +  HRG HT   P+C
Sbjct: 571 SWDHRSELGAAMRRLPSGGRTIGHRGGHTGGLPQC 605


>tr|B4FAY2|B4FAY2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 421

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +1

Query: 232 LPPRAAF*YNLHKGPA--QRVPAGLGGSGEPN*YGSQQDATAGRPLFYAGHY*GCHACRL 405
           +PP      +LH+G A  +RVP   GG+GE +                          RL
Sbjct: 328 VPPPQPARGDLHQGQAVDERVPQQPGGNGEDH--------------------------RL 361

Query: 406 LPLSAHTRRWVSSIR*RGLYRWACYSAHAFQG 501
             ++AH R WV   R R L+R +   AH  QG
Sbjct: 362 GGVAAHRRHWVRRRRRRDLHRRSAQGAHQVQG 393