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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962923
Clone id TST39A01NGRL0015_C13
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_C13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCATCGCGGCCTCAGAAGAAATGCACGGCTCACCATAATAAGACTCGTCCCAAGAAGCA
CAACCCTTCCGACAAGAACCGCAAGCCGGCAGTGTATCCCCCGTTCCCTGATCCCCCCCC
TGCTGTTGTCCTCGGCTGGGGTGACGAAGATGATGATGATGATGATGCTTCTCCTGCCTC
CGCTCCTGCTCCCTCTGCAGCTGAGCCTGCGGTAGTGGGTGCTTAGTGGGTGATCAAAGA
AACATGATCAATCATACTGGTGGCAGACATTCACATAGGGAGGAGACATGCCTGCTCATG
GTCTGATGCTGAGGGTGCGTTCAAATCATTACTTTTCCTGGGTAACTTTAGTTGCTACAG
ATTACTTGTAACTGTTGACTTGTCTGTAATTGCCTACTCCAGTTTGGATATGATGTCCTT
TGGTCTTCAAGTAATTCAAATGAAGTATTTATTAGTTGTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P11892
Definition sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum
Align length 28
Score (bit) 47.0
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962923|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_C13, 5'
         (460 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi...    47   4e-05
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=...    45   1e-04
sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=...    38   0.018
sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28 O...    31   2.9  
sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28 OS=...    29   8.5  

>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum
           sativum GN=PSRP6 PE=3 SV=1
          Length = 104

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK TAHH KTRP+K   SD+NRK
Sbjct: 41  SSRPQKKSTAHHMKTRPRKSRLSDRNRK 68


>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic
           OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
          Length = 106

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 21/28 (75%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK TAHH KTRPKK  P D  RK
Sbjct: 41  SSRPQKKSTAHHRKTRPKKTQPWDIKRK 68


>sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic
           OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1
          Length = 116

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKK 58
           SSRPQKK TAHH KTRPKK
Sbjct: 48  SSRPQKKGTAHHMKTRPKK 66


>sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28
           OS=Mus musculus GN=Cd28 PE=2 SV=1
          Length = 218

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 269 IHIGRRHACSWSDAEGAFKSLLFL-GNFSCYRLLVTVDLSVI 391
           IHI  +H C    +   F +L+ + G   CY LLVTV L VI
Sbjct: 134 IHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVI 175


>sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28
           OS=Rattus norvegicus GN=Cd28 PE=2 SV=1
          Length = 218

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 269 IHIGRRHACSWSDAEGAFKSLLFL-GNFSCYRLLVTVDLSVI 391
           IHI  +H C    +   F  L+ + G   CY LLVTV L +I
Sbjct: 134 IHIKEKHLCHAQTSPKLFWPLVVVAGVLLCYGLLVTVTLCII 175
tr_hit_id B8LPD4
Definition tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 28
Score (bit) 52.8
E-value 9.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962923|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_C13, 5'
         (460 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medic...    47   4e-04
tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Popul...    45   0.002
tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    44   0.003
tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.003
tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    41   0.034
tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    41   0.034
tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome...    40   0.044
tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.098

>tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 137

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRP+KK TAHH KTRPKKH P DKNRK
Sbjct: 55  SSRPRKKATAHHVKTRPKKHQPYDKNRK 82


>tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164709 PE=4 SV=1
          Length = 315

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SS PQKK TA HNKTRPKK NP DKNR+
Sbjct: 39  SSHPQKKSTAGHNKTRPKKSNPYDKNRQ 66


>tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 104

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK TAHH KTRP+K + SD+NRK
Sbjct: 40  SSRPQKKSTAHHMKTRPRKSSLSDRNRK 67


>tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 123

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK TAHH KTRP+K  P D  RK
Sbjct: 49  SSRPQKKATAHHRKTRPRKSQPWDIKRK 76


>tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0550800 PE=2 SV=2
          Length = 127

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/28 (67%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK T HH KTRPKK  P D+ R+
Sbjct: 44  SSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032917 PE=4 SV=1
          Length = 374

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/28 (67%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK T HH KTRPKK  P D+ R+
Sbjct: 44  SSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 123

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/28 (67%), Positives = 20/28 (71%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK T HH KTRPKK  P D  R+
Sbjct: 50  SSRPQKKGTKHHMKTRPKKTQPWDIKRR 77


>tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 121

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/28 (67%), Positives = 20/28 (71%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK T HH KTRPKK  P D  R+
Sbjct: 48  SSRPQKKGTKHHMKTRPKKTQPWDIKRR 75


>tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028574001
           PE=4 SV=1
          Length = 108

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   SSRPQKKCTAHHNKTRPKKHNPSDKNRK 85
           SSRPQKK T+HH KTRP+K  P D  R+
Sbjct: 40  SSRPQKKGTSHHMKTRPRKTQPWDIKRR 67


>tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus
          lucimarinus (strain CCE9901) GN=OSTLU_33388 PE=4 SV=1
          Length = 56

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +2

Query: 14 QKKCTAHHNKTRPKKHNPSDKNRK 85
          +KK T  H  TRPKKH PSD+NRK
Sbjct: 12 RKKATKGHTDTRPKKHRPSDRNRK 35