DK963001
Clone id TST39A01NGRL0015_F21
Library
Length 629
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_F21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CACGAAATGGCATGATGGAAAAGCTTGTCTTGTTGCCAAAAGCCATCCTGATTATGCGGA
GAGTGATTTTGTGGACAACAAAGCTTATTATCAATTGCAATTTCGCCCGAAATTTGCAGG
GAAAAAAAATTACTATGGCATGCCACAGGTCTTCATGAACAATCGTGCAGCATTACATGT
GTATACAGAAGTGGATAAAGATCTACAAGTAGCGGCCTTTGTGGTGGAGAAAACCATGCA
TATTAAGTTGAGGGTCTACTACTTGATCGACTATGATGACTATGATTCAAGTGATGTCGA
AGTTACCATAAGCACTTCCAATGATCCGAAGGTTCATCAATTCCACCTTAACAAAAGAGA
GCAATCAATTGTGTCGTTCCCATGGGTGCGAATGTACTATGCCAGCTATTCAGAGGGTGG
AGCATGGAGTACAGATTATGATAGGTTTAGTGCAAACTTAAAAATGCATTATGATGAGTA
TGCAGGCTTTGAACCTCAGGAAGGCAAGAGATATACAATCAAAACCAAGGCCGGTAGCAC
TGCAACGAAGAACTATTACATTATTGGCTTTGAAATTGTTCCCATCGATGGAGTCCCCGA
CGTGGTAGAAGCTCTTGTCAATGCTGTTG
■■Homology search results ■■ -
sp_hit_id Q23541
Definition sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis elegans
Align length 42
Score (bit) 30.8
E-value 6.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963001|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_F21, 5'
(629 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis... 31 6.0

>sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis
elegans GN=rbr-2 PE=1 SV=2
Length = 1477

Score = 30.8 bits (68), Expect = 6.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1

Query: 443 YHNLYSMLHPLNSWHSTFAPMGTTQLIALFC*GGIDEPSDHW 318
YHNL+ +L S P+ Q I L+ GG PSD W
Sbjct: 1127 YHNLFEIL----SERDDLTPLAEGQTIPLYFQGGAVHPSDEW 1164


tr_hit_id Q8IKQ1
Definition tr|Q8IKQ1|Q8IKQ1_PLAF7 Putative uncharacterized protein OS=Plasmodium falciparum (isolate 3D7)
Align length 97
Score (bit) 35.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963001|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_F21, 5'
(629 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8IKQ1|Q8IKQ1_PLAF7 Putative uncharacterized protein OS=Plasm... 35 3.7
tr|B5CVZ3|B5CVZ3_9BACE Putative uncharacterized protein OS=Bacte... 34 8.2
tr|Q8SVU6|Q8SVU6_ENCCU Similarity to PRE-mRNA SPLICING FACTOR PR... 34 8.2

>tr|Q8IKQ1|Q8IKQ1_PLAF7 Putative uncharacterized protein OS=Plasmodium
falciparum (isolate 3D7) GN=PF14_0552 PE=4 SV=1
Length = 3455

Score = 35.0 bits (79), Expect = 3.7
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Frame = +2

Query: 140 MPQVFMNNRAALHVYTEV----DKDLQVAAFVVEKTMHIKLRVYYLIXXXXXXXXXVEVT 307
M +++ NNR +Y +K ++V + + H K + YY ++ T
Sbjct: 3323 MTKIYYNNRKVQILYARYYFLKEKYIKVISILSLLNDHYKKKTYYFKRDEKGYLTNLQKT 3382

Query: 308 ISTSNDPKVHQ---FHLNKREQSIVSFPWVRMYYASY 409
+ SN+ ++ FHLN + + + + MYY SY
Sbjct: 3383 SNKSNNKYLNNILFFHLNNQSDFLYEYLNIYMYYQSY 3419


>tr|B5CVZ3|B5CVZ3_9BACE Putative uncharacterized protein
OS=Bacteroides plebeius DSM 17135 GN=BACPLE_00883 PE=4
SV=1
Length = 441

Score = 33.9 bits (76), Expect = 8.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2

Query: 428 STDYDRFSANLKMHYDEYAGFEPQEGKRYTIKTKAGST 541
++ Y S ++++ Y E +GFEP EG T+K +GST
Sbjct: 28 NSGYQVSSVSIRLVYPEGSGFEPVEGVSVTLKNTSGST 65


>tr|Q8SVU6|Q8SVU6_ENCCU Similarity to PRE-mRNA SPLICING FACTOR PRP8
OS=Encephalitozoon cuniculi GN=ECU04_0760 PE=4 SV=1
Length = 2172

Score = 33.9 bits (76), Expect = 8.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1

Query: 212 LLVDLYPLLYTHVMLHDCS*RPVACHSNFFSLQISGEIAIDNKL--CCPQNHSPH 54
LLV+L P ++ V +H C V CH + I + DN+L CC SPH
Sbjct: 93 LLVNLLPSVWMDVSIHCCD---VPCHRGLVCISIDVHCSGDNQLFCCCGLCSSPH 144