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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963017
Clone id TST39A01NGRL0015_G13
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_G13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCAGTTAGCAAGCTCGTGAAAGAATCGGGCGAATTTGTATATCCAAGTTTGGCCAATGTG
CTCATGGATTTGGGAAAGCTTGTGGGAGGTCTCATGAGCTTTAGCACGAAATGGCATGAT
GGAAAAGCTTGTCTTGTTGCCAAAAGCCATCCTGATTATGCGGAGAGTGATTTTGTGGAC
AACAAAGCTTATTATCAATTGCAATTTCGCCCGAAATTTGCAGGGAAAAAAATTACTATG
GCATGCCACAGGTCTTCATGAACAATCGTGCAGCATTACATGTGTATACAGAAGTGGATA
AAGATCTACAAGTAGCGGCCTTTGTGGTGGAGAAAACCATGCATATTAAGTTGAGGGTCT
ACTACTTGATCGACTATGATGACTATGATTCAAGTGATGTCGAAGTTACCATAAGCACTT
CCAATGATCCGAAGGTTCATCAATTCCACCTTAACAAAAGAGAGCAATCAATTGTGTCGT
TCCCATGGGTGCGAATGTACTATGCCAGCTATTCAGAGGGTGGAGCATGGAGTACAGATT
ATGATAGGTTTAGTGCAAACTTAAAAATGCATTATG
■■Homology search results ■■ -
sp_hit_id Q23541
Definition sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis elegans
Align length 42
Score (bit) 30.8
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963017|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_G13, 5'
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis...    31   5.1  
sp|O01999|PYHD_CPVCS Polyhedrin OS=Choristoneura fumiferana cypo...    30   6.7  
sp|P31625|VPRT_JSRV Bifunctional protease/dUTPase OS=Sheep pulmo...    30   8.6  

>sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis
            elegans GN=rbr-2 PE=1 SV=2
          Length = 1477

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 546  YHNLYSMLHPLNSWHSTFAPMGTTQLIALFC*GGIDEPSDHW 421
            YHNL+ +L    S      P+   Q I L+  GG   PSD W
Sbjct: 1127 YHNLFEIL----SERDDLTPLAEGQTIPLYFQGGAVHPSDEW 1164


>sp|O01999|PYHD_CPVCS Polyhedrin OS=Choristoneura fumiferana
           cypovirus PE=4 SV=1
          Length = 258

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 273 LHDCS*RPVACHSNFFPCKFRAK 205
           +H+C   P+ C+SNFF  KF  +
Sbjct: 152 IHNCQWTPIGCYSNFFVMKFNQR 174


>sp|P31625|VPRT_JSRV Bifunctional protease/dUTPase OS=Sheep
           pulmonary adenomatosis virus GN=pro PE=3 SV=1
          Length = 326

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -2

Query: 86  PTSFPKSM--STLAKLGYTNSPDSFTSLLT 3
           PT++PK M  STL  +G T +P+  +SLLT
Sbjct: 213 PTTWPKQMAISTLQGIGQTTNPEQSSSLLT 242
tr_hit_id Q8IKQ1
Definition tr|Q8IKQ1|Q8IKQ1_PLAF7 Putative uncharacterized protein OS=Plasmodium falciparum (isolate 3D7)
Align length 97
Score (bit) 35.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963017|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_G13, 5'
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8IKQ1|Q8IKQ1_PLAF7 Putative uncharacterized protein OS=Plasm...    35   2.9  
tr|A1S981|A1S981_SHEAM Putative uncharacterized protein OS=Shewa...    33   8.6  

>tr|Q8IKQ1|Q8IKQ1_PLAF7 Putative uncharacterized protein OS=Plasmodium
            falciparum (isolate 3D7) GN=PF14_0552 PE=4 SV=1
          Length = 3455

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = +3

Query: 243  MPQVFMNNRAALHVYTEV----DKDLQVAAFVVEKTMHIKLRVYYLIXXXXXXXXXVEVT 410
            M +++ NNR    +Y       +K ++V + +     H K + YY           ++ T
Sbjct: 3323 MTKIYYNNRKVQILYARYYFLKEKYIKVISILSLLNDHYKKKTYYFKRDEKGYLTNLQKT 3382

Query: 411  ISTSNDPKVHQ---FHLNKREQSIVSFPWVRMYYASY 512
             + SN+  ++    FHLN +   +  +  + MYY SY
Sbjct: 3383 SNKSNNKYLNNILFFHLNNQSDFLYEYLNIYMYYQSY 3419


>tr|A1S981|A1S981_SHEAM Putative uncharacterized protein
           OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
           GN=Sama_2735 PE=4 SV=1
          Length = 309

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 98  ALARNGMMEKLVLLPKAILIMRRVILWTTKLIINCNFARNLQGKKLLWHATGLH 259
           A+A+   + KL+L+P A+LI   V    T L++        +G + LWHA   H
Sbjct: 60  AVAKGSFLNKLILVPLALLISAFVPWLVTPLLMFGGLFLCFEGFEKLWHARAKH 113