DK963042 |
Clone id |
TST39A01NGRL0015_H15 |
Library |
TST39 |
Length |
647 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_H15. 5' end sequence. |
Accession |
DK963042 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL71Contig1 |
Sequence |
CCAGGGGTCATGGGTATGAGGGTGTTGTAACCAGGTGGGGCGTGACAAGGCTACCCCGCA AGACTCATCGTGGTCTCCGTAAGGTTGCTTGTATTGGAGCTTGGCACCCTGCTCGCGTGT CCTTCACATTTGCAAGAGCTGGGCAAAGAGGTTATCACCATAGGACTGAAATGAACAAGA AGGTCTATAAGATTGGGAAGGCTGGGGATGAGTCTCACAAAGCCTCTACTGAGTTTGACA CTACTGACAAGGACATAACTCCCATGGGTGGCTTTGCTCACTATGGTATCGTGAAGGAAG ATTTTGTCATGATCAAAGGTTGCTGCATGGGCCCCAAGAAGAGAGTCATCACTCTTCGGA AGTCCCTTTACAAGCAGACTTCTCGCAGTGCCTTGGAGGAGATCAAGTTGAAGTTTATTG ACACGTCATCTAAATTTGGGCATGGTCGCTTCCAGACTTCCCAGGAGAAGGCAAAAACTT TTGGCAGGGTGAAGTGAGTACTTTTTAGGGAGGGGAGAAGCTAGTTGTTTTGGAAGAGTA TTAATGAGACTTCAAAGCGGCTTTGGAACTGCTATTTTGTCTGAATTTCTCATTCTAATT CTCACTTAAATGTTTTATTGTCGAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P35684 |
Definition |
sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica |
Align length |
164 |
Score (bit) |
293.0 |
E-value |
6.0e-79 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QC77 |
Definition |
tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
164 |
Score (bit) |
299.0 |
E-value |
1.0e-79 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963042|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0015_H15, 5' (623 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whol... 299 1e-79 tr|A5BAZ0|A5BAZ0_VITVI Putative uncharacterized protein OS=Vitis... 299 1e-79 tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea... 298 2e-79 tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2... 295 1e-78 tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea m... 295 1e-78 tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella paten... 295 1e-78 tr|Q6TKQ9|Q6TKQ9_TOBAC Ribosomal protein L3B OS=Nicotiana tabacu... 295 2e-78 tr|Q9SXL7|Q9SXL7_CUCSA Csf-3 protein OS=Cucumis sativus GN=Csf-3... 294 3e-78 tr|A9NRB1|A9NRB1_PICSI Putative uncharacterized protein OS=Picea... 294 3e-78 tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromos... 294 3e-78 tr|A9T2B3|A9T2B3_PHYPA Predicted protein OS=Physcomitrella paten... 293 4e-78 tr|Q7X744|Q7X744_WHEAT Ribosomal protein L3 (Ribosomal protein L... 293 6e-78 tr|Q6TKR0|Q6TKR0_TOBAC Ribosomal protein L3A OS=Nicotiana tabacu... 293 6e-78 tr|A1YE31|A1YE31_WHEAT Ribosomal protein L3-A3 OS=Triticum aesti... 293 6e-78 tr|Q53JG0|Q53JG0_ORYSJ 60S ribosomal protein L3, putative, expre... 293 7e-78 tr|Q2VCJ2|Q2VCJ2_SOLTU Ribosomal protein L3-like OS=Solanum tube... 293 7e-78 tr|Q0IPU6|Q0IPU6_ORYSJ Os12g0167900 protein OS=Oryza sativa subs... 293 7e-78 tr|A5D934|A5D934_ORYSA Ribosomal protein L3B OS=Oryza sativa GN=... 293 7e-78 tr|A2ZIF8|A2ZIF8_ORYSI Putative uncharacterized protein OS=Oryza... 293 7e-78 tr|A2ZBV5|A2ZBV5_ORYSI Putative uncharacterized protein OS=Oryza... 293 7e-78 tr|A9SGV3|A9SGV3_PHYPA Predicted protein OS=Physcomitrella paten... 292 1e-77 tr|Q7X748|Q7X748_WHEAT Ribosomal protein L3 (Ribosomal protein L... 292 1e-77 tr|Q6V959|Q6V959_WHEAT Ribosomal protein L3 (Ribosomal protein L... 292 1e-77 tr|Q08G39|Q08G39_WHEAT Ribosomal protein L3 OS=Triticum aestivum... 292 1e-77 tr|A9P806|A9P806_POPTR Putative uncharacterized protein OS=Popul... 292 1e-77 tr|A1YE34|A1YE34_WHEAT Ribosomal protein L3-B2 OS=Triticum aesti... 292 1e-77 tr|A9PCQ3|A9PCQ3_POPTR Putative uncharacterized protein OS=Popul... 291 2e-77 tr|Q6SKP4|Q6SKP4_SOLLC Ribosomal protein L3 OS=Solanum lycopersi... 290 4e-77 tr|Q9AT58|Q9AT58_LOLPR L3 ribosomal protein (Fragment) OS=Lolium... 288 2e-76 tr|A9PB80|A9PB80_POPTR Putative uncharacterized protein OS=Popul... 286 5e-76
>tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035280001 PE=3 SV=1 Length = 219
Score = 299 bits (765), Expect = 1e-79 Identities = 137/164 (83%), Positives = 152/164 (92%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT ARAGQ GYHHRTEMNKK Sbjct: 55 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 114
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 +YK+GK G ESH A TEFD T+KDITPMGGF HYG+VK+D+++IKGCC+GPKKRV+TLR+ Sbjct: 115 IYKVGKTGQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQ 174
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR A+EEIKLKFIDTSSKFGHGRFQT+QEKAK FGR+K Sbjct: 175 SLLKQTSRVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFFGRLK 218
>tr|A5BAZ0|A5BAZ0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042376 PE=3 SV=1 Length = 389
Score = 299 bits (765), Expect = 1e-79 Identities = 137/164 (83%), Positives = 152/164 (92%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT ARAGQ GYHHRTEMNKK Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 284
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 +YK+GK G ESH A TEFD T+KDITPMGGF HYG+VK+D+++IKGCC+GPKKRV+TLR+ Sbjct: 285 IYKVGKTGQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQ 344
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR A+EEIKLKFIDTSSKFGHGRFQT+QEKAK FGR+K Sbjct: 345 SLLKQTSRVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFFGRLK 388
>tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 389
Score = 298 bits (762), Expect = 2e-79 Identities = 137/164 (83%), Positives = 153/164 (93%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT ARAGQ GYHHRTEMNKK Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 284
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 +YKIGKA ESHKA TEFD T+KDITPMGGF HYG++K+D++MI+GCC+G KKRV+TLR+ Sbjct: 285 IYKIGKADQESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQ 344
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR+ALEEIKLKFIDTSSKFGHGRFQT+QEKAK FG++K Sbjct: 345 SLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLK 388
>tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2 SV=1 Length = 389
Score = 295 bits (755), Expect = 1e-78 Identities = 138/164 (84%), Positives = 151/164 (92%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+T ARAGQ GYHHRTEMNKK Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 VYKIGKAG E+H ASTEFD T+KDITPMGGF HYGIVK D++MIKGCC+GPKKRV+TLR+ Sbjct: 285 VYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQ 344
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR ALEEIKLKFIDTSSKFGHGRFQT+ EK + FG++K Sbjct: 345 SLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 389
Score = 295 bits (755), Expect = 1e-78 Identities = 138/164 (84%), Positives = 151/164 (92%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+T ARAGQ GYHHRTEMNKK Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 VYKIGKAG E+H ASTEFD T+KDITPMGGF HYGIVK D++MIKGCC+GPKKRV+TLR+ Sbjct: 285 VYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQ 344
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR ALEEIKLKFIDTSSKFGHGRFQT+ EK + FG++K Sbjct: 345 SLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_225706 PE=3 SV=1 Length = 392
Score = 295 bits (755), Expect = 1e-78 Identities = 142/165 (86%), Positives = 153/165 (92%), Gaps = 1/165 (0%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT ARAGQ GYHHRTEMNKK Sbjct: 225 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 284
Query: 183 VYKIGKAGD-ESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLR 359 VYK+GK+ D ES ASTEFD T+K+ITPMGGFAHYGIV+ED++MIKG MGPKKRVITLR Sbjct: 285 VYKVGKSADKESFSASTEFDVTEKEITPMGGFAHYGIVREDYLMIKGGVMGPKKRVITLR 344
Query: 360 KSLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 +SLYKQ SRSALE+IKLKFIDTSSKFGHGRFQTS EKAK +G+VK Sbjct: 345 QSLYKQVSRSALEDIKLKFIDTSSKFGHGRFQTSLEKAKVYGKVK 389
>tr|Q6TKQ9|Q6TKQ9_TOBAC Ribosomal protein L3B OS=Nicotiana tabacum GN=RPL3B PE=2 SV=1 Length = 409
Score = 295 bits (754), Expect = 2e-78 Identities = 137/164 (83%), Positives = 151/164 (92%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+T ARAGQ GYHHRTE+NKK Sbjct: 245 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 304
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 VY++GKAG ESH A TEFD T+KDITPMGGF HYGIVKEDF++IKGCC+GPKKRV+TLR+ Sbjct: 305 VYRLGKAGQESHSAITEFDRTEKDITPMGGFPHYGIVKEDFLLIKGCCVGPKKRVVTLRQ 364
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL QTSR ALEEIKLKFIDTSSKFGHGRFQT+QEK K +GR+K Sbjct: 365 SLLNQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKDKFYGRLK 408
>tr|Q9SXL7|Q9SXL7_CUCSA Csf-3 protein OS=Cucumis sativus GN=Csf-3 PE=2 SV=1 Length = 219
Score = 294 bits (753), Expect = 3e-78 Identities = 141/164 (85%), Positives = 149/164 (90%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT ARAGQ GYHHRTEMNKK Sbjct: 55 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 114
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 VYKIGK G ESH A TEFD T+KDITPMGGF HYGIVK D++MIKG C+GPKKRVITLR+ Sbjct: 115 VYKIGKTGQESHTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIKGGCVGPKKRVITLRQ 174
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR ALEEIKLKFIDTSSKFGHGRFQT+QEK K FGR+K Sbjct: 175 SLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLK 218
>tr|A9NRB1|A9NRB1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 389
Score = 294 bits (753), Expect = 3e-78 Identities = 136/164 (82%), Positives = 150/164 (91%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT ARAGQ GYHHRTEMNKK Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 284
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 +YKIGK ESH A TEFD T+KDITPMGGF HYG+VK+D++MI+GCCMG KKRV+TLR+ Sbjct: 285 IYKIGKKDQESHNAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQ 344
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR+ALEEIKLKFIDTSSKFGHGRFQT QEKAK +G++K Sbjct: 345 SLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTIQEKAKIYGKLK 388
>tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromosome chr18 scaffold_59, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00031743001 PE=3 SV=1 Length = 389
Score = 294 bits (753), Expect = 3e-78 Identities = 137/164 (83%), Positives = 150/164 (91%) Frame = +3
Query: 3 RGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTFARAGQRGYHHRTEMNKK 182 +G GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT ARAGQ GYHHRTEMNKK Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 284
Query: 183 VYKIGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRK 362 +YK+GK ESH A TEFD T+KDITPMGGF HYG+VK+D+VMIKGCC+GPKKRV+TLR+ Sbjct: 285 IYKLGKIEQESHTALTEFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRVVTLRQ 344
Query: 363 SLYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 494 SL KQTSR ALEEIKLKFIDTSSKFGHGRFQT+QEK K +GR+K Sbjct: 345 SLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRMK 388
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