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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963068
Clone id TST39A01NGRL0015_I17
Library
Length 787
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_I17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTCACTAGCCATCTTCTGTGGAGAGGTCGACACTGAAGAGCTATGGCGACCATGTCTGCG
TCTCTGGCCGTGAGCGCGCCGAGCTGCCCACCCGCAGAGCAGAGCCTCTCACAGAAGAGC
TTCTCGGGCCTCAAGGCGACCACTCTATTCGCCCTCAAGTGCGGCAATCCCCTCGCCCTC
TCCAATGGCAGCCGCATCAGCGCCATGCTGGTGTGGAAGCCGTACGACAACAAGAAGTTT
GAGACTCTGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAAAGCAGGTGGACTAC
ATGGTGCGACAGAACTTTACCCCCTGCATCGAGTTCGACAACATTGGGAGCGTGTACCGG
GAGCACTTCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGATGTGGAAGCTGCCC
ATGTTTGGCTGCACCGACTCTGCCGCCGTTCTGCGAGAGATTACTGAGTGCGCCAAGGAG
TATCCCAAGGCCTTCATCCGGGTGCTTGGCTTCGATGCCAAGCGCCAGGTCCAGGTTGCT
GGCTTCCTCGTCCAGAAGCCTGGCCAGTAACCTCATCTGAGTTACTCCTTGGGAGACATT
GATCACAATAATTTGGGAGGGCAATCGCCCTTTCAAAGCTTGATACGCTGTCGTTGTGGC
TGCTGTTGGCTTCCTGTTTTTGTCCCTAAGGGATTTAAAAGTATATGGGACACACCTTTT
TTGAAAAAAAATGTCCCCGCCAAAACCCCTGGGGTTGGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 176
Score (bit) 190.0
E-value 6.0e-48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963068|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_I17, 5'
         (758 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   190   6e-48
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   187   7e-47
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   186   9e-47
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   184   3e-46
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   184   5e-46
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   183   8e-46
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   183   1e-45
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   183   1e-45
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   182   2e-45
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   181   3e-45
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   181   4e-45
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   181   5e-45
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   180   9e-45
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   180   9e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   179   1e-44
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   178   3e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   177   4e-44
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   176   2e-43
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   176   2e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   175   2e-43
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   175   3e-43
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   175   3e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   175   3e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   174   4e-43

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  190 bits (483), Expect = 6e-48
 Identities = 96/176 (54%), Positives = 119/176 (67%), Gaps = 5/176 (2%)
 Frame = +1

Query: 49  TMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVW 216
           +M +S  V+A S     QS     F+ LK+T+ F +  K  N +    SNG R+  M VW
Sbjct: 4   SMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVW 63

Query: 217 KPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDG 393
            P   KKFETLSYLP LSSEQ+AK+VDY++R+N  PC+EF+   G VYREH    GYYDG
Sbjct: 64  PPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDG 123

Query: 394 RYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           RYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 124 RYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  187 bits (474), Expect = 7e-47
 Identities = 93/178 (52%), Positives = 119/178 (66%), Gaps = 5/178 (2%)
 Frame = +1

Query: 43  MATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLAL--SNGSRISAML 210
           MA++S+S   +       + SL+   F+GLK+   F +  K  N  +   SNG R+  M 
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 211 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 387
           VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYREH H  GYY
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 388 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  186 bits (473), Expect = 9e-47
 Identities = 90/175 (51%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +1

Query: 52  MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 219
           M++S+  SA       Q+     F+GLK++  F    K  N +    SNG R++ M VW 
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 220 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 396
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 397 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  184 bits (468), Expect = 3e-46
 Identities = 91/175 (52%), Positives = 117/175 (66%), Gaps = 5/175 (2%)
 Frame = +1

Query: 52  MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 219
           M++S+  SA       Q+     F+GLK++  F +  K  N +    SNG R+S M VW 
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 220 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 396
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 397 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  184 bits (467), Expect = 5e-46
 Identities = 92/179 (51%), Positives = 120/179 (67%), Gaps = 5/179 (2%)
 Frame = +1

Query: 40  AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAM 207
           A +  S++  V++P+     Q+     F+GLK++  F +  K  N +    SNG R+S M
Sbjct: 2   ASSMFSSTAVVTSPA-----QATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 56

Query: 208 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 384
            VW P   KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 385 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           YDGRYW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
           3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
           PE=1 SV=2
          Length = 181

 Score =  183 bits (465), Expect = 8e-46
 Identities = 91/175 (52%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +1

Query: 52  MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 219
           M++S+  SA       Q+     F+GLK++  F +  K    +    SNG R+S M VW 
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWP 60

Query: 220 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 396
           P   KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 397 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  183 bits (464), Expect = 1e-45
 Identities = 86/156 (55%), Positives = 110/156 (70%), Gaps = 8/156 (5%)
 Frame = +1

Query: 118 SFSGLKATTLF--ALKCGNPLA------LSNGSRISAMLVWKPYDNKKFETLSYLPQLSS 273
           +F+GLK+T  F  + K  N  A       SNG R+  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 274 EQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKLPMFGCTDSAAVL 453
           EQ+ K+V+Y++R  + PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFGCT+++ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 454 REITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
            E+ ECAK YPKAFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  183 bits (464), Expect = 1e-45
 Identities = 92/182 (50%), Positives = 123/182 (67%), Gaps = 8/182 (4%)
 Frame = +1

Query: 40  AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLF--ALKCGNPLA------LSNGSR 195
           A+++ +A  AV+APS       +S  +F+GLK+   F  +    N  A       SNGSR
Sbjct: 7   ALSSTAAVAAVAAPSKTGNSNVVS--AFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSR 64

Query: 196 ISAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG 375
           +  M VW PY NKKFETLSYLP+L+ EQ+ K+V+Y+++  + PC+EF+  G + R + + 
Sbjct: 65  VRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNS 124

Query: 376 SGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQ 555
            GYYDGRYWVMWKLPMFGCT+++ VL E+ ECAK YP AFIRV+GFD  RQVQ   F+V 
Sbjct: 125 PGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVH 184

Query: 556 KP 561
           KP
Sbjct: 185 KP 186


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score =  182 bits (463), Expect = 1e-45
 Identities = 89/175 (50%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +1

Query: 52  MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 219
           M++S+  SA       Q+     F+GLK+++ F +  K  N +   +SNG R+S M VW 
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWP 60

Query: 220 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 396
           P   KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGR
Sbjct: 61  PVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGR 120

Query: 397 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           YW MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score =  182 bits (461), Expect = 2e-45
 Identities = 90/176 (51%), Positives = 122/176 (69%), Gaps = 4/176 (2%)
 Frame = +1

Query: 46  ATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLF-ALKCGNPLA--LSNGSRISAMLVW 216
           +++ +S AV+  S  PA+ S+    F+GLK+T  F A K  + +    SNG R+  M VW
Sbjct: 3   SSVLSSAAVATVSRTPAQASMVAP-FTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVW 61

Query: 217 KPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDG 393
              + K++ETLSYLP L+++Q+A+QVDY++   + PC+EF+ + G VYREH +  GYYDG
Sbjct: 62  PTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDG 121

Query: 394 RYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           RYW MWKLPMFGCTD A VL E+ EC KEYP AFIR++GFD+ RQVQ   F+  KP
Sbjct: 122 RYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP 177
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 175
Score (bit) 305.0
E-value 3.0e-81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963068|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_I17, 5'
         (758 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   305   3e-81
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   215   2e-54
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   212   2e-53
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   211   4e-53
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   210   9e-53
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   210   9e-53
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   207   6e-52
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   197   6e-49
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   195   2e-48
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   195   3e-48
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   194   4e-48
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   194   5e-48
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   193   1e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   192   2e-47
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   192   2e-47
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   191   5e-47
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   191   5e-47
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   190   1e-46
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   189   2e-46
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   189   2e-46
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   187   9e-46
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   186   2e-45
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   186   2e-45
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...   186   2e-45
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c...   186   2e-45

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  305 bits (780), Expect = 3e-81
 Identities = 147/175 (84%), Positives = 160/175 (91%)
 Frame = +1

Query: 43  MATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKP 222
           MATM A++AVSAPSC  A +SLS KSFSGLKA TLFA KC NPLA+SNGSRISAMLVWKP
Sbjct: 1   MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 223 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 402
           YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW
Sbjct: 60  YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 403 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKPGQ 567
           +MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGFLV+KP Q
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPSQ 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  215 bits (548), Expect = 2e-54
 Identities = 103/177 (58%), Positives = 126/177 (71%), Gaps = 3/177 (1%)
 Frame = +1

Query: 40  AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWK 219
           A A +S S+  +A       +S S K FSGLK+TTLFA K     ++ NGSR+  M VW 
Sbjct: 2   ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 220 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 390
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 391 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  212 bits (540), Expect = 2e-53
 Identities = 102/177 (57%), Positives = 125/177 (70%), Gaps = 3/177 (1%)
 Frame = +1

Query: 40  AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWK 219
           A A +S S+  +A       +S S K FSGLK+TTL A K     ++ NGSR+  M VW 
Sbjct: 2   ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 220 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 390
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 391 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  211 bits (537), Expect = 4e-53
 Identities = 100/170 (58%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
 Frame = +1

Query: 61  SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 240
           SL  +A S   + +S + K+FSGLK  TLF+ K     A+ NGSR+  M VW P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 241 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 411
           ET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 412 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  210 bits (534), Expect = 9e-53
 Identities = 103/176 (58%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
 Frame = +1

Query: 43  MATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKP 222
           +A   AS  V APS     +S S K+FSGLK+ TLF+ K     ++ NGSR+  M VW P
Sbjct: 43  VALGGASSCVGAPS-----ESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNP 97

Query: 223 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDG 393
               KFET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDG
Sbjct: 98  IGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDG 157

Query: 394 RYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           RYW MWKLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 158 RYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 213


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  210 bits (534), Expect = 9e-53
 Identities = 99/170 (58%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
 Frame = +1

Query: 61  SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 240
           S+ V++ S   + +S S K+FSGLK+ TLF  K     ++ NGSR+  M VW P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 241 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 411
           ET SYLP LS +QIA+QVDYM++QN  PCIEFD +G+V R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 412 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           KLPMFGCTDS+ VLREI EC   YP  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARP 183


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  207 bits (527), Expect = 6e-52
 Identities = 98/170 (57%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
 Frame = +1

Query: 61  SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 240
           SLA ++P+   +  S S K+FSGLK+ TLF+ +     ++ NGSR+  M VW P    KF
Sbjct: 14  SLAAASPAAV-SRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 241 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 411
           ET SYLP L+ ++IAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 73  ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 412 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRP 182


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  197 bits (501), Expect = 6e-49
 Identities = 98/181 (54%), Positives = 119/181 (65%), Gaps = 7/181 (3%)
 Frame = +1

Query: 40  AMATMSASLAVSAP-------SCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRI 198
           AMA++ A+  V AP       S     +S S K+FSGLK+ TLF+ K     ++ NGSR+
Sbjct: 2   AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 199 SAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGS 378
             M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    
Sbjct: 62  QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 379 GYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQK 558
           GYYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVAR 181

Query: 559 P 561
           P
Sbjct: 182 P 182


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  195 bits (496), Expect = 2e-48
 Identities = 97/180 (53%), Positives = 119/180 (66%), Gaps = 7/180 (3%)
 Frame = +1

Query: 43  MATMSASLAVSAP-------SCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRIS 201
           MA++ A+  V AP       S     +S S K+FSGLK++TLF+ K  +  ++ NGSR+ 
Sbjct: 1   MASVVATSTVVAPAAFAASSSAVSTSESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQ 60

Query: 202 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 381
            M VW P    KFET SYLP LS + IAKQVDYM++Q   PC+EFDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPG 120

Query: 382 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           YYDGRYW MWKLPMFGC D A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  195 bits (495), Expect = 3e-48
 Identities = 99/180 (55%), Positives = 120/180 (66%), Gaps = 7/180 (3%)
 Frame = +1

Query: 43  MATMSASLAVSAPSC-----PPAEQSLSQ--KSFSGLKATTLFALKCGNPLALSNGSRIS 201
           MA+  A+ AV AP+      P A  S S   K+FSGLK+ T+F+ K  N  ++ NGSR+ 
Sbjct: 1   MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 202 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 381
            M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 382 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 561
           YYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180