| DK963117 |
| Clone id |
TST39A01NGRL0015_K19 |
| Library |
TST39 |
| Length |
584 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_K19. 5' end sequence. |
| Accession |
DK963117 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL1500Contig1 |
| Sequence |
GGGCTCTTCTGCTTCGTATTGCAAATCGGGCACTTCGACGTCGTCTTTTCTAACAGTATA TCGTGTTACATGATCCTCCAATGTCTACAAATCGAAACTATCAGTATGTCCGCAGGCAGC CAACAGTGGGTGCACCCACAAATGGGCAAAGTAGCTCCAGGATCAATACTCCAGTAAGTT CCTCACTGGCAACTTTTGGTAACTCTTATGATTGGAAGTCGCAAATCAAGAGGCCCCCTG CGGATACTCGTTATAAAACTGAGGATGTGACAGCAACAAAAGGTAATGAATTCGAGGACT ATTTTTTGAAAAGGGAGCTGCTCATGGGAATATTCGAGAAAGGCTTCGAGAAGCCATCAC CAATTCAAGAGGAAAGCATACCGATAGCATTGACGGGAAGTGATATTTTAGCAAGGGCAA AGAATGGGACTGGGAAGACAGCAGCCTTTTGTATTCCCGTAATTGAAAAGACTGATCCTA GCAAAAATTTTATTCAAGCTCTAATACTGGTTCCCACAAGGGAATTGGCTTTTCAAACAT CACAAGTTTGCAAGGAGCTGGCTAAGTATCTGAACATTGAGGTA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q109G2 |
| Definition |
sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica |
| Align length |
172 |
| Score (bit) |
230.0 |
| E-value |
3.0e-60 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A7QIS9 |
| Definition |
tr|A7QIS9|A7QIS9_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera |
| Align length |
171 |
| Score (bit) |
231.0 |
| E-value |
3.0e-59 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963117|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0015_K19, 5' (584 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QIS9|A7QIS9_VITVI Chromosome chr2 scaffold_105, whole genom... 231 3e-59 tr|B8BHR5|B8BHR5_ORYSI Putative uncharacterized protein OS=Oryza... 230 4e-59 tr|B7ELN4|B7ELN4_ORYSJ cDNA clone:J033023C03, full insert sequen... 230 4e-59 tr|A3C696|A3C696_ORYSJ Putative uncharacterized protein OS=Oryza... 230 4e-59 tr|B7EJQ0|B7EJQ0_ORYSJ cDNA clone:J023100C24, full insert sequen... 226 6e-58 tr|A2XVU7|A2XVU7_ORYSI Putative uncharacterized protein OS=Oryza... 226 6e-58 tr|B6TLY3|B6TLY3_MAIZE ATP-dependent RNA helicase dhh1 OS=Zea ma... 226 9e-58 tr|B4FR21|B4FR21_MAIZE ATP-dependent RNA helicase dhh1 OS=Zea ma... 224 3e-57 tr|A9SKD4|A9SKD4_PHYPA Predicted protein OS=Physcomitrella paten... 223 8e-57 tr|A9SHW4|A9SHW4_PHYPA Predicted protein OS=Physcomitrella paten... 223 8e-57 tr|B8LKI3|B8LKI3_PICSI Putative uncharacterized protein OS=Picea... 222 1e-56 tr|B8A2Z7|B8A2Z7_MAIZE Putative uncharacterized protein OS=Zea m... 221 2e-56 tr|B8AFZ8|B8AFZ8_ORYSI Putative uncharacterized protein OS=Oryza... 221 3e-56 tr|B7EKD5|B7EKD5_ORYSJ cDNA clone:J013124F19, full insert sequen... 221 3e-56 tr|A3A9H3|A3A9H3_ORYSJ Putative uncharacterized protein OS=Oryza... 221 3e-56 tr|B6T965|B6T965_MAIZE ATP-dependent RNA helicase dhh1 OS=Zea ma... 220 4e-56 tr|B6SWB3|B6SWB3_MAIZE ATP-dependent RNA helicase dhh1 OS=Zea ma... 220 4e-56 tr|A5C9D5|A5C9D5_VITVI Putative uncharacterized protein (Chromos... 216 7e-55 tr|A8IT25|A8IT25_CHLRE Cytoplasmic DExD/H-box RNA helicase OS=Ch... 210 5e-53 tr|Q017E1|Q017E1_OSTTA Putative RNA helicase (ISS) OS=Ostreococc... 206 8e-52 tr|A4RYS0|A4RYS0_OSTLU Predicted protein OS=Ostreococcus lucimar... 204 4e-51 tr|A7S8H2|A7S8H2_NEMVE Predicted protein OS=Nematostella vectens... 201 3e-50 tr|B4G7J5|B4G7J5_DROPE GL19172 OS=Drosophila persimilis GN=GL191... 195 1e-48 tr|B3MPN5|B3MPN5_DROAN GF15754 OS=Drosophila ananassae GN=GF1575... 195 1e-48 tr|B4KJI4|B4KJI4_DROMO GI18279 OS=Drosophila mojavensis GN=GI182... 195 2e-48 tr|B4NZ69|B4NZ69_DROYA Me31B OS=Drosophila yakuba GN=Dyak\me31B ... 194 2e-48 tr|B3N945|B3N945_DROER GG10095 OS=Drosophila erecta GN=GG10095 P... 194 2e-48 tr|B4JPM1|B4JPM1_DROGR GH13374 OS=Drosophila grimshawi GN=GH1337... 193 7e-48 tr|B4NQ96|B4NQ96_DROWI GK21209 OS=Drosophila willistoni GN=GK212... 192 9e-48 tr|B4LR21|B4LR21_DROVI GJ17531 OS=Drosophila virilis GN=GJ17531 ... 192 9e-48
>tr|A7QIS9|A7QIS9_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000382001 PE=3 SV=1 Length = 480
Score = 231 bits (588), Expect = 3e-59 Identities = 119/171 (69%), Positives = 133/171 (77%), Gaps = 1/171 (0%) Frame = +3
Query: 75 PPMSTNRNYQYVRRQP-TVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQIKRPPADTR 251 PPM + Q++RR P +P N + + V SS S DWK+Q++ PP DTR Sbjct: 41 PPMQNQQQQQWLRRIPIATDSPANEVEKTVQSEVVDSS------SQDWKAQLRVPPPDTR 94
Query: 252 YKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDILARAKNGT 431 YKTEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDILARAKNGT Sbjct: 95 YKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGT 154
Query: 432 GKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 GKTAAFCIP +EK DP N IQ +ILVPTRELA QTSQVCKEL K+L IEV Sbjct: 155 GKTAAFCIPALEKIDPDNNVIQVVILVPTRELALQTSQVCKELGKHLKIEV 205
>tr|B8BHR5|B8BHR5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_34232 PE=4 SV=1 Length = 524
Score = 230 bits (587), Expect = 4e-59 Identities = 116/172 (67%), Positives = 135/172 (78%) Frame = +3
Query: 69 HDPPMSTNRNYQYVRRQPTVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQIKRPPADT 248 H S+++ Q++RR A +G+ ++R + A +S DWK+Q+ P DT Sbjct: 81 HAQRNSSSQQQQWLRRDQATAAAASGEVAARTAAQLE---AVDSSSEDWKAQLNLPAPDT 137
Query: 249 RYKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDILARAKNG 428 RY+TEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDILARAKNG Sbjct: 138 RYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNG 197
Query: 429 TGKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 TGKTAAFCIP +EK DP KN IQ +ILVPTRELA QTSQVCKEL KYLNI+V Sbjct: 198 TGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQV 249
>tr|B7ELN4|B7ELN4_ORYSJ cDNA clone:J033023C03, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 521
Score = 230 bits (587), Expect = 4e-59 Identities = 116/172 (67%), Positives = 135/172 (78%) Frame = +3
Query: 69 HDPPMSTNRNYQYVRRQPTVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQIKRPPADT 248 H S+++ Q++RR A +G+ ++R + A +S DWK+Q+ P DT Sbjct: 78 HAQRNSSSQQQQWLRRDQATAAAASGEVAARTAAQLE---AVDSSSEDWKAQLNLPAPDT 134
Query: 249 RYKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDILARAKNG 428 RY+TEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDILARAKNG Sbjct: 135 RYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNG 194
Query: 429 TGKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 TGKTAAFCIP +EK DP KN IQ +ILVPTRELA QTSQVCKEL KYLNI+V Sbjct: 195 TGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQV 246
>tr|A3C696|A3C696_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_030818 PE=4 SV=1 Length = 821
Score = 230 bits (587), Expect = 4e-59 Identities = 116/172 (67%), Positives = 135/172 (78%) Frame = +3
Query: 69 HDPPMSTNRNYQYVRRQPTVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQIKRPPADT 248 H S+++ Q++RR A +G+ ++R + A +S DWK+Q+ P DT Sbjct: 78 HAQRNSSSQQQQWLRRDQATAAAASGEVAARTAAQLE---AVDSSSEDWKAQLNLPAPDT 134
Query: 249 RYKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDILARAKNG 428 RY+TEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDILARAKNG Sbjct: 135 RYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNG 194
Query: 429 TGKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 TGKTAAFCIP +EK DP KN IQ +ILVPTRELA QTSQVCKEL KYLNI+V Sbjct: 195 TGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQV 246
>tr|B7EJQ0|B7EJQ0_ORYSJ cDNA clone:J023100C24, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 498
Score = 226 bits (577), Expect = 6e-58 Identities = 118/179 (65%), Positives = 137/179 (76%), Gaps = 2/179 (1%) Frame = +3
Query: 54 QYIVLHDPPMSTNRNYQYVR--RQPTVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQI 227 QY+ P T N Q+ + R+ + A G S + PV+ + + +S DWK+Q+ Sbjct: 48 QYVQRQPQPQQTPHNSQHQQWLRRNQIAAEAAGASEQKA-PPVADGIDS--SSQDWKAQL 104
Query: 228 KRPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDI 407 K PP DTRY+TEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDI Sbjct: 105 KLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI 164
Query: 408 LARAKNGTGKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 LARAKNGTGKTAAFCIP +EK D KN IQ +ILVPTRELA QTSQVCKEL K+L I+V Sbjct: 165 LARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQV 223
>tr|A2XVU7|A2XVU7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_16765 PE=3 SV=1 Length = 484
Score = 226 bits (577), Expect = 6e-58 Identities = 118/179 (65%), Positives = 137/179 (76%), Gaps = 2/179 (1%) Frame = +3
Query: 54 QYIVLHDPPMSTNRNYQYVR--RQPTVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQI 227 QY+ P T N Q+ + R+ + A G S + PV+ + + +S DWK+Q+ Sbjct: 34 QYVQRQPQPQQTPHNSQHQQWLRRNQIAAEAAGASEQKA-PPVADGIDS--SSQDWKAQL 90
Query: 228 KRPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDI 407 K PP DTRY+TEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDI Sbjct: 91 KLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI 150
Query: 408 LARAKNGTGKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 LARAKNGTGKTAAFCIP +EK D KN IQ +ILVPTRELA QTSQVCKEL K+L I+V Sbjct: 151 LARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQV 209
>tr|B6TLY3|B6TLY3_MAIZE ATP-dependent RNA helicase dhh1 OS=Zea mays PE=2 SV=1 Length = 503
Score = 226 bits (575), Expect = 9e-58 Identities = 115/169 (68%), Positives = 132/169 (78%), Gaps = 2/169 (1%) Frame = +3
Query: 84 STNRNYQYVRRQ--PTVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQIKRPPADTRYK 257 +++ Q++RR P V P +G + + + A +S DWK+Q+ P DTRY+ Sbjct: 63 NSSHQQQWLRRDQGPAVAGPVSGNAVPKTAPQLD---AVDSSSQDWKAQLNIPAPDTRYR 119
Query: 258 TEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 437 TEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDILARAKNGTGK Sbjct: 120 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGK 179
Query: 438 TAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 TAAFCIP +EK DP N IQ +ILVPTRELA QTSQVCKEL KYLNIEV Sbjct: 180 TAAFCIPALEKIDPENNAIQVVILVPTRELALQTSQVCKELGKYLNIEV 228
>tr|B4FR21|B4FR21_MAIZE ATP-dependent RNA helicase dhh1 OS=Zea mays PE=2 SV=1 Length = 499
Score = 224 bits (571), Expect = 3e-57 Identities = 114/163 (69%), Positives = 131/163 (80%), Gaps = 2/163 (1%) Frame = +3
Query: 102 QYVRRQ--PTVGAPTNGQSSSRINTPVSSSLATFGNSYDWKSQIKRPPADTRYKTEDVTA 275 Q++RR P V +G + ++ + + A +S DWK+Q+ P DTRY+TEDVTA Sbjct: 65 QWLRRDQAPAVAGAASGNAVAKTASQLD---AVGSSSQDWKAQLNIPAPDTRYRTEDVTA 121
Query: 276 TKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCI 455 TKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESIPIALTGSDILARAKNGTGKTAAFCI Sbjct: 122 TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCI 181
Query: 456 PVIEKTDPSKNFIQALILVPTRELAFQTSQVCKELAKYLNIEV 584 P +EK DP KN IQ +ILVPTRELA QTSQVCKEL KYLNI+V Sbjct: 182 PALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQV 224
>tr|A9SKD4|A9SKD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_131244 PE=3 SV=1 Length = 406
Score = 223 bits (567), Expect = 8e-57 Identities = 107/128 (83%), Positives = 118/128 (92%) Frame = +3
Query: 201 NSYDWKSQIKRPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESI 380 +S DWK+Q+K PP D RYKTEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESI Sbjct: 4 SSQDWKAQLKLPPPDARYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI 63
Query: 381 PIALTGSDILARAKNGTGKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKEL 560 PIALTGSDILARAKNGTGKTAAFCIP IEK D +KN +Q L+LVPTRELA QTSQVCKEL Sbjct: 64 PIALTGSDILARAKNGTGKTAAFCIPAIEKIDQNKNAVQVLLLVPTRELALQTSQVCKEL 123
Query: 561 AKYLNIEV 584 AK+LNI++ Sbjct: 124 AKHLNIQI 131
>tr|A9SHW4|A9SHW4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_79636 PE=3 SV=1 Length = 406
Score = 223 bits (567), Expect = 8e-57 Identities = 107/128 (83%), Positives = 118/128 (92%) Frame = +3
Query: 201 NSYDWKSQIKRPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEESI 380 +S DWK+Q+K PP D RYKTEDVTATKGNEFEDYFLKRELLMGI+EKGFE+PSPIQEESI Sbjct: 4 SSQDWKAQLKLPPPDARYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI 63
Query: 381 PIALTGSDILARAKNGTGKTAAFCIPVIEKTDPSKNFIQALILVPTRELAFQTSQVCKEL 560 PIALTGSDILARAKNGTGKTAAFCIP IEK D +KN +Q L+LVPTRELA QTSQVCKEL Sbjct: 64 PIALTGSDILARAKNGTGKTAAFCIPAIEKIDQNKNAVQVLLLVPTRELALQTSQVCKEL 123
Query: 561 AKYLNIEV 584 AK+LNI++ Sbjct: 124 AKHLNIQI 131
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