DK963121
Clone id TST39A01NGRL0015_K23
Library
Length 648
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_K23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
TACATTTTGGTTTGTTTCCTTCTGAAACTTCACTCAGCATGCCTTGCTACTGAAATGTCT
GTTTGAACCTACCATTGCTTCTTGACTTTCATGGTGGTTTGATGTGCTGAGGATCAAGCT
CTGTGTTGCCGCATCGTTCCACTTTACAATGTTATTACCAAGCTCTAAGAAATGGATCCA
TCGATTTGCAACATGTGCTTCCATCTTCGCCCATATCCTCTCCCTAGCTAGTCTTGCGTC
TTGCGCTTCACAGTTCATGCCATCAAACTCAGAAGCTTTCAGCGCATGGGATGGCTCTTC
CACACGTGAGATGGGAGGAGCAGGGGGAGGTAGCTTCGTATACAGGTCTTCGTACTTGCG
AAGCGATGAGGTCGAGCAACATTGCAAGTCTCATCTTACCGGTGTGTCCCATGACGCATC
TTTCCTGAAAGAAATGGAGAACAAGAAGTGGGCCATCACAAATGAGCTTTCCTTCCTCAA
TGGTGAATGGCAGGGGGTTTCTGGCAAGAAACCTTTGATGCCTTTCAGATTTAATTTCAA
TGCATCAGGAGGAGGCTTTCAGCTGGTCTCCTTTTGGGTTACTGATGTAGATGTTCCAAG
AGGGAACTCTGGGGAAGGCAACATTGTCAATGTGAGTGCTGTTTTGCA
■■Homology search results ■■ -
sp_hit_id Q9P6K5
Definition sp|Q9P6K5|DML1_SCHPO Protein dml1 OS=Schizosaccharomyces pombe
Align length 49
Score (bit) 33.5
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963121|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_K23, 5'
(648 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9P6K5|DML1_SCHPO Protein dml1 OS=Schizosaccharomyces pombe G... 33 0.98
sp|Q8FTA6|ACNR_COREF HTH-type transcriptional repressor acnR OS=... 31 4.9
sp|Q8U352|Y620_PYRFU UPF0251 protein PF0620 OS=Pyrococcus furios... 31 4.9
sp|P38861|NMD3_YEAST 60S ribosomal export protein NMD3 OS=Saccha... 30 8.3
sp|P00722|BGAL_ECOLI Beta-galactosidase OS=Escherichia coli (str... 30 8.3

>sp|Q9P6K5|DML1_SCHPO Protein dml1 OS=Schizosaccharomyces pombe
GN=dml1 PE=1 SV=1
Length = 465

Score = 33.5 bits (75), Expect = 0.98
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2

Query: 338 VYRSSYLRSDEVEQHCKSHLTGVSHDASF-LKEMENKKWAITNELSFLN 481
VY SS R ++E +S G H+ +F K +K+WA+ + SF+N
Sbjct: 308 VYGSSCYRMKDIESKLQSEGRGFIHNLNFKAKNYSSKEWALVSSASFVN 356


>sp|Q8FTA6|ACNR_COREF HTH-type transcriptional repressor acnR
OS=Corynebacterium efficiens GN=acnR PE=3 SV=1
Length = 188

Score = 31.2 bits (69), Expect = 4.9
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = -3

Query: 508 LARNPLPFTIEEGKLICDGPLLVLHFFQERCVMGHTGKMR-------LAMLLDLIASQVR 350
LARN ++G++ D P+ VLH + E + G ++ L+ +LDL+ + VR
Sbjct: 131 LARNA-----DKGRMRTDVPIEVLHLYLETVMDGFISRLATGASTEGLSEVLDLVETSVR 185

Query: 349 RP 344
RP
Sbjct: 186 RP 187


>sp|Q8U352|Y620_PYRFU UPF0251 protein PF0620 OS=Pyrococcus furiosus
GN=PF0620 PE=3 SV=1
Length = 108

Score = 31.2 bits (69), Expect = 4.9
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Frame = -1

Query: 342 YTKLP---PPAPPISRVEEPSHALKASEFDGMNCEAQDARL--ARERIWAKM-------- 202
Y LP PP PPI E AL+ +++G+ E R+ +R IW +
Sbjct: 25 YPALPRFGPPKPPIIMTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTIWRALTSARKKVA 84

Query: 201 EAHVANRWIHFLELGNNIVK 142
+ V R + L GN ++K
Sbjct: 85 QMLVEGRELIILPQGNEVIK 104


>sp|P38861|NMD3_YEAST 60S ribosomal export protein NMD3
OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2
Length = 518

Score = 30.4 bits (67), Expect = 8.3
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +2

Query: 329 GSFVYRSSYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKW-----AITNELSFLNGEWQ 493
G+ Y+ SY S E+ CK L V K M N I+N + F++
Sbjct: 236 GASTYKFSY--SVEIVPICKDDL--VVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTL 291

Query: 494 GVSGKKPLMPFRFNFNASGGGFQLVSFWVTDVD---VPRGN 607
+ P + +R FNA QLV F V DVD + RGN
Sbjct: 292 QTADLSPSVYWRAPFNALADVTQLVEFIVLDVDSTGISRGN 332


>sp|P00722|BGAL_ECOLI Beta-galactosidase OS=Escherichia coli (strain
K12) GN=lacZ PE=1 SV=2
Length = 1024

Score = 30.4 bits (67), Expect = 8.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2

Query: 380 HCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPFRFNF 538
H HLT + + F E+ NK+W + FL+ W G K+ L P R F
Sbjct: 736 HAIPHLT--TSEMDFCIELGNKRWQFNRQSGFLSQMWIG-DKKQLLTPLRDQF 785


tr_hit_id A7P7M8
Definition tr|A7P7M8|A7P7M8_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 88
Score (bit) 59.3
E-value 2.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963121|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_K23, 5'
(648 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7P7M8|A7P7M8_VITVI Chromosome chr9 scaffold_7, whole genome ... 59 2e-07
tr|A7P7M9|A7P7M9_VITVI Chromosome chr9 scaffold_7, whole genome ... 59 3e-07
tr|A5CAV7|A5CAV7_VITVI Putative uncharacterized protein OS=Vitis... 57 7e-07
tr|Q7XI95|Q7XI95_ORYSJ Putative uncharacterized protein P0453G03... 46 0.002
tr|Q0D558|Q0D558_ORYSJ Os07g0580700 protein OS=Oryza sativa subs... 46 0.002
tr|A3BLJ1|A3BLJ1_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.002
tr|A2YN09|A2YN09_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.002
tr|Q9C940|Q9C940_ARATH Putative uncharacterized protein F14G24.5... 45 0.004
tr|Q0WPB8|Q0WPB8_ARATH Putative uncharacterized protein At1g5278... 45 0.004
tr|Q5VRW0|Q5VRW0_ORYSJ Putative uncharacterized protein P0013F10... 43 0.019
tr|A2WLA9|A2WLA9_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.019
tr|B8B7S6|B8B7S6_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.16
tr|A2ZPV6|A2ZPV6_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.21
tr|A9REX3|A9REX3_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.4
tr|Q170R9|Q170R9_AEDAE Putative uncharacterized protein OS=Aedes... 36 2.3
tr|B2HTW4|B2HTW4_ACIBC Histidinol dehydrogenase OS=Acinetobacter... 35 3.0
tr|B0V7Q3|B0V7Q3_ACIBY Histidinol dehydrogenase OS=Acinetobacter... 35 3.0
tr|Q016C0|Q016C0_OSTTA Dynein 1-alpha heavy chain, flagellar inn... 35 3.0
tr|B0VV22|B0VV22_ACIBS Histidinol dehydrogenase OS=Acinetobacter... 35 4.0
tr|A3M2I7|A3M2I7_ACIBT Histidinol dehydrogenase OS=Acinetobacter... 35 4.0
tr|B7GZI4|B7GZI4_ACIBA Histidinol dehydrogenase(HDH) OS=Acinetob... 35 4.0
tr|B8LV51|B8LV51_9EURO Cytomegalovirus gH-receptor family protei... 35 5.2
tr|Q4RV69|Q4RV69_TETNG Chromosome 15 SCAF14992, whole genome sho... 34 6.7
tr|Q6ZYN0|Q6ZYN0_HYDEC Chitinase 1 OS=Hydractinia echinata GN=ch... 34 8.7
tr|B4I6L6|B4I6L6_DROSE GM22867 OS=Drosophila sechellia GN=GM2286... 34 8.8

>tr|A7P7M8|A7P7M8_VITVI Chromosome chr9 scaffold_7, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00034525001
PE=4 SV=1
Length = 2052

Score = 59.3 bits (142), Expect = 2e-07
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +2

Query: 353 YLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPF-- 526
Y R EV++ C S L+ AS LK + K + I ELSF+NG+W +G PLMPF
Sbjct: 42 YERFSEVKRECSSFLSS----ASELKLEKEKAYEIATELSFVNGDWVQEAGGAPLMPFDD 97

Query: 527 ---RFNFNASGGGFQLVSFWVTDVDVPR 601
NF++ G +L SFW+ +D R
Sbjct: 98 SDMPRNFSSPGSLLKLASFWMMGIDFSR 125



Score = 57.4 bits (137), Expect = 7e-07
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = +2

Query: 353 YLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPF-- 526
Y R DEV++ C L+ AS LK +N+ ++I EL F+NG+W +G PLMP+
Sbjct: 1045 YDRIDEVKKACGFVLSS----ASELKPDDNRVYSIKKELPFVNGDWVQDAGGLPLMPYVV 1100

Query: 527 RFNFNASGG---GFQLVSFWVTDVDVPRGNSGEGNIVNVSAVL 646
R +++ S LVSFWVTDVD R N V+VS +L
Sbjct: 1101 RKSWDNSSDFHTPMNLVSFWVTDVDTTRRLK---NSVSVSGLL 1140


>tr|A7P7M9|A7P7M9_VITVI Chromosome chr9 scaffold_7, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00034526001
PE=4 SV=1
Length = 1009

Score = 58.5 bits (140), Expect = 3e-07
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Frame = +2

Query: 350 SYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPF- 526
S+ R EV + C S L+ AS LK K + + NELSFL G+W +G PLMPF
Sbjct: 41 SFERLSEVRRECNSFLSS----ASKLKLEGGKAYRMPNELSFLYGDWMQETGTSPLMPFD 96

Query: 527 ----RFNFNASGGGFQLVSFWVTDVDV 595
NF+ SG +LVSF + D+D+
Sbjct: 97 DGDMGKNFSDSGSLLKLVSFSIMDIDI 123


>tr|A5CAV7|A5CAV7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_036654 PE=4 SV=1
Length = 1037

Score = 57.4 bits (137), Expect = 7e-07
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = +2

Query: 353 YLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPF-- 526
Y R DEV++ C L+ AS LK +N+ ++I EL F+NG+W +G PLMP+
Sbjct: 46 YDRIDEVKKACGFVLSS----ASELKPDDNRVYSIKKELPFVNGDWVQDAGGLPLMPYVV 101

Query: 527 RFNFNASGG---GFQLVSFWVTDVDVPRGNSGEGNIVNVSAVL 646
R +++ S LVSFWVTDVD R N V+VS +L
Sbjct: 102 RKSWDNSSDFHTPMNLVSFWVTDVDTTRRLK---NSVSVSGLL 141


>tr|Q7XI95|Q7XI95_ORYSJ Putative uncharacterized protein P0453G03.24
OS=Oryza sativa subsp. japonica GN=P0453G03.24 PE=4 SV=1
Length = 2033

Score = 46.2 bits (108), Expect = 0.002
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +2

Query: 350 SYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPFR 529
SYLR +V++ C+S LT S A ++ K ELSF G+W+ +G PL+PF
Sbjct: 1039 SYLRFADVKRQCRSVLTSASELADNAYRVKRVK----RELSFEKGDWRQDAGTDPLVPFD 1094

Query: 530 FNFNASGG------GFQLVSFWVTDVDVPRGNSGEGNIVNVSAVL 646
A G +L +F VT VD N VNVS +L
Sbjct: 1095 GGDAAEDGRRPPLDPLRLATFVVTHVDDDDERRAR-NAVNVSGLL 1138



Score = 36.6 bits (83), Expect = 1.3
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2

Query: 455 ITNELSFLNGEWQGVSGKKPLMPFRFNFNASGGG----FQLVSFWVT--DVDVPRGNSGE 616
+ +LSF NG+W +G+ PLMP S GG +L +F VT D D R
Sbjct: 62 LARDLSFANGDWGQDAGRAPLMP-------SQGGDSPFLRLATFAVTHIDTDALRRRRPA 114

Query: 617 GNIVNVSAVL 646
+ VNVS VL
Sbjct: 115 MSAVNVSGVL 124


>tr|Q0D558|Q0D558_ORYSJ Os07g0580700 protein OS=Oryza sativa subsp.
japonica GN=Os07g0580700 PE=4 SV=1
Length = 1030

Score = 46.2 bits (108), Expect = 0.002
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +2

Query: 350 SYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPFR 529
SYLR +V++ C+S LT S A ++ K ELSF G+W+ +G PL+PF
Sbjct: 36 SYLRFADVKRQCRSVLTSASELADNAYRVKRVK----RELSFEKGDWRQDAGTDPLVPFD 91

Query: 530 FNFNASGG------GFQLVSFWVTDVDVPRGNSGEGNIVNVSAVL 646
A G +L +F VT VD N VNVS +L
Sbjct: 92 GGDAAEDGRRPPLDPLRLATFVVTHVDDDDERRAR-NAVNVSGLL 135


>tr|A3BLJ1|A3BLJ1_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_023913 PE=4 SV=1
Length = 2010

Score = 46.2 bits (108), Expect = 0.002
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +2

Query: 350 SYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPFR 529
SYLR +V++ C+S LT S A ++ K ELSF G+W+ +G PL+PF
Sbjct: 1016 SYLRFADVKRQCRSVLTSASELADNAYRVKRVK----RELSFEKGDWRQDAGTDPLVPFD 1071

Query: 530 FNFNASGG------GFQLVSFWVTDVDVPRGNSGEGNIVNVSAVL 646
A G +L +F VT VD N VNVS +L
Sbjct: 1072 GGDAAEDGRRPPLDPLRLATFVVTHVDDDDERRAR-NAVNVSGLL 1115



Score = 36.6 bits (83), Expect = 1.3
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2

Query: 455 ITNELSFLNGEWQGVSGKKPLMPFRFNFNASGGG----FQLVSFWVT--DVDVPRGNSGE 616
+ +LSF NG+W +G+ PLMP S GG +L +F VT D D R
Sbjct: 62 LARDLSFANGDWGQDAGRAPLMP-------SQGGDSPFLRLATFAVTHIDTDALRRRRPA 114

Query: 617 GNIVNVSAVL 646
+ VNVS VL
Sbjct: 115 MSAVNVSGVL 124


>tr|A2YN09|A2YN09_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26619 PE=4 SV=1
Length = 1020

Score = 46.2 bits (108), Expect = 0.002
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +2

Query: 350 SYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPFR 529
SYLR +V++ C+S LT S A ++ K ELSF G+W+ +G PL+PF
Sbjct: 19 SYLRFADVKRQCRSVLTSASELADNAYRVKRVK----RELSFEKGDWRQDAGTDPLVPFD 74

Query: 530 FNFNASGG------GFQLVSFWVTDVDVPRGNSGEGNIVNVSAVL 646
A G +L +F VT VD N VNVS +L
Sbjct: 75 GGDAAEDGRRPPLDPLRLATFVVTHVDDDDERRAR-NAVNVSGLL 118


>tr|Q9C940|Q9C940_ARATH Putative uncharacterized protein F14G24.5
OS=Arabidopsis thaliana GN=F14G24.5 PE=4 SV=1
Length = 1030

Score = 45.1 bits (105), Expect = 0.004
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +2

Query: 350 SYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPFR 529
SY R ++V++ CKS L+ S L+++ L F G+W SG P++PF
Sbjct: 22 SYDRINDVKKKCKSVLSSASELK--LEDISRTPRKSKRNLGFRYGDWNQDSGDSPILPFD 79

Query: 530 FN---FNASGGGFQLVSFWVTDVDVP 598
N+S LVSF VTD+D+P
Sbjct: 80 STNTLRNSSTKPMNLVSFSVTDLDLP 105


>tr|Q0WPB8|Q0WPB8_ARATH Putative uncharacterized protein At1g52780
OS=Arabidopsis thaliana GN=At1g52780 PE=2 SV=1
Length = 1059

Score = 45.1 bits (105), Expect = 0.004
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +2

Query: 350 SYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQGVSGKKPLMPFR 529
SY R ++V++ CKS L+ S L+++ L F G+W SG P++PF
Sbjct: 51 SYDRINDVKKKCKSVLSSASELK--LEDISRTPRKSKRNLGFRYGDWNQDSGDSPILPFD 108

Query: 530 FN---FNASGGGFQLVSFWVTDVDVP 598
N+S LVSF VTD+D+P
Sbjct: 109 STNTLRNSSTKPMNLVSFSVTDLDLP 134


>tr|Q5VRW0|Q5VRW0_ORYSJ Putative uncharacterized protein P0013F10.19
OS=Oryza sativa subsp. japonica GN=P0013F10.19 PE=4 SV=1
Length = 1093

Score = 42.7 bits (99), Expect = 0.019
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Frame = +2

Query: 314 GGAGGGSFVYRSSYLRSDEVEQHCKSHLTGVSHDASFLKEMENKKWAITNELSFLNGEWQ 493
GGAG G F+ Y+R +V++ CKS L+ A+ L N+ + ELSF+ G+W+
Sbjct: 35 GGAGQGPFIPHE-YVRFADVKRQCKSVLS----SAAELTFDANRANGLMPELSFVKGDWK 89

Query: 494 -----GVSGKKPLMPFRFN-------FNASGGGFQLVSFWVTDVDVPRGNSGEGNIVNVS 637
G PL+PF A+ L SF +T VD R +NVS
Sbjct: 90 HDGDGDGGGGAPLLPFDGTDVAEDAAAGAARDPLPLASFSLTHVDAARRGR---TALNVS 146

Query: 638 AVL 646
VL
Sbjct: 147 GVL 149