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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963137
Clone id TST39A01NGRL0015_L15
Library
Length 597
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_L15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAGTGCAAACGCGTCATTACGAGAGAGATTAGAGCGCCCATCTGCGAATAATGGGCTCT
TGATATCACTATTGTGTCTTGTGCATCTGTTGGAGAAAGAAAGAGAGATGCAAGGATGCC
CAACGTGCACAAGGAGGCATTGCTGTTGTATGCAGAGGTGAAGGCGATGAAGATGACCTT
GATGCTTGTCCGTGGCTTCCACGTTACATCCATCTGAAGCTAGCTGCTGAGTAGAGAGCT
CTTATGCGGGCCTCTCAAATCGACACGCTTTCTGTGATTTCCAAGTGAAGGGGCTTTCTG
TCGGAGTTCTGAAGAAGCAAGGATGAGTATCAAAGGGGCCTTTGCTTTGAAGGGCCAATG
GACTGCAAATGCAGCGAAAACAGCCAATGCAGAAGAGGGCGCCTCTAAGGAGTGGGAGCT
CCGTCCTTGTGGAATGCTCGTCCAGAAGAGGGATCCAGAGGCAGAGGCTGTCCATGCCGG
ACCTGTAATCAGGATCAAGGTCTCTTTTGGTCGTTCCTCTCATCGCGTTTCTGTCAACGC
CCACTCCACCTTTGGTGACTTAAAAAAGCTTTTGGTTCAGCTCACTGGCCTGCAACC
■■Homology search results ■■ -
sp_hit_id Q7ULT3
Definition sp|Q7ULT3|RF1_RHOBA Peptide chain release factor 1 OS=Rhodopirellula baltica
Align length 58
Score (bit) 31.6
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963137|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_L15, 5'
         (597 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ULT3|RF1_RHOBA Peptide chain release factor 1 OS=Rhodopirel...    32   3.2  
sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thali...    31   5.4  

>sp|Q7ULT3|RF1_RHOBA Peptide chain release factor 1
           OS=Rhodopirellula baltica GN=prfA PE=3 SV=1
          Length = 360

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 274 QKACRFERPA*ELSTQQLASDGCNVEATDKHQGHLHRLHLCIQQQCLLVHVGHPCISL 101
           +K  RFE+   ++S  ++ SDG  + AT +  G L+RL    +    L    H C+++
Sbjct: 11  EKLARFEKLENDMSDPEVLSDGARMSATAREHGGLNRLANQYRTFKRLTDEIHQCVAM 68


>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana
           GN=FH11 PE=2 SV=1
          Length = 884

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -2

Query: 467 PLPLDPSSGRAFHKDGAPTP*RRPLLHW 384
           PL LD S  R   KDGAP P  +P LHW
Sbjct: 450 PLSLDFSERRPLGKDGAPLPKLKP-LHW 476
tr_hit_id A9SAE3
Definition tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 62
Score (bit) 84.7
E-value 4.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963137|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_L15, 5'
         (597 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella paten...    85   4e-15
tr|B7ZZK8|B7ZZK8_MAIZE Putative uncharacterized protein OS=Zea m...    73   1e-11
tr|B4FV61|B4FV61_MAIZE BCL-2 binding anthanogene-1 OS=Zea mays P...    73   1e-11
tr|A9NZJ4|A9NZJ4_PICSI Putative uncharacterized protein OS=Picea...    70   1e-10
tr|A6MD01|A6MD01_9ORYZ BAG domain-containing protein OS=Oryza br...    69   3e-10
tr|B6SGR1|B6SGR1_MAIZE Protein binding protein OS=Zea mays PE=2 ...    68   3e-10
tr|B6TJD1|B6TJD1_MAIZE Protein binding protein OS=Zea mays PE=2 ...    68   5e-10
tr|B6TFJ9|B6TFJ9_MAIZE Protein binding protein OS=Zea mays PE=2 ...    68   5e-10
tr|Q8RX71|Q8RX71_ARATH At3g51780/ORF3 OS=Arabidopsis thaliana PE...    67   8e-10
tr|Q8LDA0|Q8LDA0_ARATH Putative uncharacterized protein OS=Arabi...    67   8e-10
tr|O65021|O65021_ARATH Putative uncharacterized protein OS=Arabi...    67   8e-10
tr|Q5N9K2|Q5N9K2_ORYSJ cDNA clone:J023047C12, full insert sequen...    67   1e-09
tr|B8ABN1|B8ABN1_ORYSI Putative uncharacterized protein OS=Oryza...    67   1e-09
tr|A7QVK4|A7QVK4_VITVI Chromosome chr16 scaffold_189, whole geno...    67   1e-09
tr|A5BKZ8|A5BKZ8_VITVI Putative uncharacterized protein OS=Vitis...    67   1e-09
tr|Q6ZFW2|Q6ZFW2_ORYSJ Putative BAG domain containing protein OS...    66   1e-09
tr|Q0J3Y2|Q0J3Y2_ORYSJ Os08g0546100 protein OS=Oryza sativa subs...    66   1e-09
tr|A3BVF7|A3BVF7_ORYSJ Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|A2YXR5|A2YXR5_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|A7NYB8|A7NYB8_VITVI Chromosome chr6 scaffold_3, whole genome ...    65   4e-09
tr|A7Q1A1|A7Q1A1_VITVI Chromosome chr10 scaffold_43, whole genom...    64   5e-09
tr|A5AT76|A5AT76_VITVI Putative uncharacterized protein OS=Vitis...    64   5e-09
tr|Q651M9|Q651M9_ORYSJ Os09g0524800 protein OS=Oryza sativa subs...    64   7e-09
tr|B8BDL2|B8BDL2_ORYSI Putative uncharacterized protein OS=Oryza...    64   7e-09
tr|A9RFF9|A9RFF9_PHYPA Predicted protein OS=Physcomitrella paten...    64   7e-09
tr|A3C0R9|A3C0R9_ORYSJ Putative uncharacterized protein OS=Oryza...    64   7e-09
tr|B6TTR9|B6TTR9_MAIZE Protein binding protein OS=Zea mays PE=2 ...    64   9e-09
tr|A7QKX5|A7QKX5_VITVI Chromosome chr8 scaffold_115, whole genom...    62   2e-08
tr|Q8LEP8|Q8LEP8_ARATH Putative uncharacterized protein OS=Arabi...    60   7e-08
tr|Q3E872|Q3E872_ARATH Uncharacterized protein At5g62100.2 (Puta...    60   7e-08

>tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_126710 PE=4 SV=1
          Length = 259

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 44/62 (70%), Positives = 50/62 (80%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHAGPVIRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQLTG 589
           EWE+RP GMLVQKRDP+A AV  GP+++IKVS G   H VSV AHSTFGDLK+LLV  TG
Sbjct: 13  EWEMRPGGMLVQKRDPDA-AVATGPLVKIKVSHGLFGHDVSVPAHSTFGDLKRLLVGDTG 71

Query: 590 LQ 595
           LQ
Sbjct: 72  LQ 73


>tr|B7ZZK8|B7ZZK8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 259

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 38/62 (61%), Positives = 47/62 (75%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHAGPVIRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQLTG 589
           EWE+RP GMLVQ+RD EA    AGPVIRI+VS G +   V V A +TFG+LK++LVQ TG
Sbjct: 14  EWEVRPGGMLVQRRDGEA----AGPVIRIRVSHGANFREVVVPAQATFGELKRILVQTTG 69

Query: 590 LQ 595
           L+
Sbjct: 70  LE 71


>tr|B4FV61|B4FV61_MAIZE BCL-2 binding anthanogene-1 OS=Zea mays PE=2
           SV=1
          Length = 259

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 38/62 (61%), Positives = 47/62 (75%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHAGPVIRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQLTG 589
           EWE+RP GMLVQ+RD EA    AGPVIRI+VS G +   V V A +TFG+LK++LVQ TG
Sbjct: 14  EWEVRPGGMLVQRRDGEA----AGPVIRIRVSHGANFREVVVPAQATFGELKRILVQTTG 69

Query: 590 LQ 595
           L+
Sbjct: 70  LE 71


>tr|A9NZJ4|A9NZJ4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 254

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
 Frame = +2

Query: 404 SKEWELRPCGMLVQKRDPEAEAVHAG-PVIRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQ 580
           S +WE+RP GMLVQ+RDP+A+   A  P I+++V+ G S H VSV+  +TFG+LKKLL  
Sbjct: 29  SIDWEVRPGGMLVQRRDPDADQESAPCPKIKVRVTHGSSLHEVSVSMQATFGELKKLLAP 88

Query: 581 LTGLQ 595
            TGL+
Sbjct: 89  ETGLE 93


>tr|A6MD01|A6MD01_9ORYZ BAG domain-containing protein OS=Oryza
           brachyantha PE=4 SV=1
          Length = 332

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHAG-PVIRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQLT 586
           EWE+RP GMLVQKR PE++A  A  P IR+KV F    H + VN+ ++FG+LKKLL   T
Sbjct: 34  EWEVRPGGMLVQKRSPESDAPAAPVPTIRVKVKFNGVYHEIYVNSQASFGELKKLLSAQT 93

Query: 587 GL 592
           GL
Sbjct: 94  GL 95


>tr|B6SGR1|B6SGR1_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 334

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHAGPV--IRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQL 583
           EWE+RP GMLVQKR P+A+A    PV  IR+KV F    H + +N+ ++FG+LKK+L   
Sbjct: 36  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGMYHEIYINSQASFGELKKMLSAR 95

Query: 584 TGL 592
           TGL
Sbjct: 96  TGL 98


>tr|B6TJD1|B6TJD1_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 334

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHAGPV--IRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQL 583
           EWE+RP GMLVQKR P+A+A    PV  IR+KV F    H + +N+ ++FG+LKK+L   
Sbjct: 36  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGVYHEIYINSQASFGELKKMLSAR 95

Query: 584 TGL 592
           TGL
Sbjct: 96  TGL 98


>tr|B6TFJ9|B6TFJ9_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 336

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHAGPV--IRIKVSFGRSSHRVSVNAHSTFGDLKKLLVQL 583
           EWE+RP GMLVQKR P+A+A    PV  IR+KV F    H + +N+ ++FG+LKK+L   
Sbjct: 38  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGVYHEIYINSQASFGELKKMLSAR 97

Query: 584 TGL 592
           TGL
Sbjct: 98  TGL 100


>tr|Q8RX71|Q8RX71_ARATH At3g51780/ORF3 OS=Arabidopsis thaliana PE=2
           SV=1
          Length = 269

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHA------------GPVIRIKVSFGRSSHRVSVNAHSTF 553
           EWE+RP GMLVQ+RD  A + H                IRI VS G S H + ++AH+TF
Sbjct: 10  EWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAHATF 69

Query: 554 GDLKKLLVQLTGLQ 595
           GD+KK LVQ TGL+
Sbjct: 70  GDVKKALVQKTGLE 83


>tr|Q8LDA0|Q8LDA0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 268

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
 Frame = +2

Query: 410 EWELRPCGMLVQKRDPEAEAVHA------------GPVIRIKVSFGRSSHRVSVNAHSTF 553
           EWE+RP GMLVQ+RD  A + H                IRI VS G S H + ++AH+TF
Sbjct: 9   EWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAHATF 68

Query: 554 GDLKKLLVQLTGLQ 595
           GD+KK LVQ TGL+
Sbjct: 69  GDVKKALVQKTGLE 82