DK963145 |
Clone id |
TST39A01NGRL0015_L23 |
Library |
TST39 |
Length |
582 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_L23. 5' end sequence. |
Accession |
DK963145 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL85Contig1 |
Sequence |
GATATCCCAACATATGTCGTCGGGGTGAATGAAGGTGATTACGGTCACTAGGTTGCCAAC ATCATCAGTAATGCTTCATGCACGACTAACTGCCTTGCCCCCTTTGTGAAAGTTTTGGAT GAGGAGTTCGGCATTGTGAAGGGTACCATGACCACCACCCACTCCTACACTGGCGACCAG AGGCTATTAGATGCATCTCACCGAGACTTGAGGAGAGCTAGGGCAGCGGCTCTTAACATT GTTCCAACTAGCACAGGAGCTGCAAAAGCTGTTTCACTTGTGCTACCTCAGCTGAAGGGC AAGCTCAATGGCATTGCACTTCGCGTCCCAACCCCTAATGTGTCGGTGGTGGATCTTGTT GTCAATGTGAGCAAGAAAGGCCTGACAGCGGAGGACGTAAACTCTGCATTCCGAAAGGCT GCTGACGGTCCCCTCAAGGGAATCCTAGCTGTCTGTGATGTGCCTCTGGTGTCAGTCGAT TTCCGATGCTCCGACGTTTCTTCTACCGTGGACTCCTCCTTGACGATGGTTATGGGCGAT GATATGGTGAAAGTGGTTGCGTGGTATGATAATGAGTGGGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P25857 |
Definition |
sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana |
Align length |
194 |
Score (bit) |
261.0 |
E-value |
2.0e-69 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963145|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0015_L23, 5' (582 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,... 261 2e-69 sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, c... 260 3e-69 sp|P09044|G3PB_TOBAC Glyceraldehyde-3-phosphate dehydrogenase B,... 259 5e-69 sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,... 255 1e-67 sp|P19866|G3PA_SPIOL Glyceraldehyde-3-phosphate dehydrogenase A,... 224 2e-58 sp|P50362|G3PA_CHLRE Glyceraldehyde-3-phosphate dehydrogenase A,... 223 5e-58 sp|P09672|G3PA_SINAL Glyceraldehyde-3-phosphate dehydrogenase A,... 218 2e-56 sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A,... 217 3e-56 sp|P09315|G3PA_MAIZE Glyceraldehyde-3-phosphate dehydrogenase A,... 216 7e-56 sp|Q8VXQ9|G3PA_SCEVA Glyceraldehyde-3-phosphate dehydrogenase A,... 214 2e-55 sp|P12858|G3PA_PEA Glyceraldehyde-3-phosphate dehydrogenase A, c... 214 2e-55 sp|P09043|G3PA_TOBAC Glyceraldehyde-3-phosphate dehydrogenase A,... 194 2e-49 sp|P34919|G3PA_CHOCR Glyceraldehyde-3-phosphate dehydrogenase, c... 194 2e-49 sp|P34917|G3P2_ANAVT Glyceraldehyde-3-phosphate dehydrogenase 2 ... 190 5e-48 sp|P58554|G3P2_ANASP Glyceraldehyde-3-phosphate dehydrogenase 2 ... 190 5e-48 sp|P30724|G3PA_GRAVE Glyceraldehyde-3-phosphate dehydrogenase, c... 188 2e-47 sp|P80505|G3P2_SYNY3 Glyceraldehyde-3-phosphate dehydrogenase 2 ... 185 1e-46 sp|P00362|G3P_BACST Glyceraldehyde-3-phosphate dehydrogenase OS=... 165 1e-40 sp|P23722|G3P_BACME Glyceraldehyde-3-phosphate dehydrogenase OS=... 164 3e-40 sp|Q4MQ58|G3P1_BACCE Glyceraldehyde-3-phosphate dehydrogenase 1 ... 164 3e-40 sp|P09124|G3P1_BACSU Glyceraldehyde-3-phosphate dehydrogenase 1 ... 163 7e-40 sp|P94915|G3P_MYCAV Glyceraldehyde-3-phosphate dehydrogenase OS=... 162 1e-39 sp|P64178|G3P_MYCTU Glyceraldehyde-3-phosphate dehydrogenase OS=... 162 1e-39 sp|P64179|G3P_MYCBO Glyceraldehyde-3-phosphate dehydrogenase OS=... 162 1e-39 sp|O34425|G3P2_BACSU Glyceraldehyde-3-phosphate dehydrogenase 2 ... 161 2e-39 sp|Q9Z518|G3P_STRCO Glyceraldehyde-3-phosphate dehydrogenase OS=... 155 2e-37 sp|P19089|G3P_CRYPA Glyceraldehyde-3-phosphate dehydrogenase OS=... 150 3e-36 sp|P46713|G3P_MYCLE Glyceraldehyde-3-phosphate dehydrogenase OS=... 150 4e-36 sp|P46795|G3P_BORBU Glyceraldehyde-3-phosphate dehydrogenase OS=... 149 8e-36 sp|P00361|G3P_THEAQ Glyceraldehyde-3-phosphate dehydrogenase OS=... 149 1e-35
>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2 Length = 447
Score = 261 bits (666), Expect = 2e-69 Identities = 136/194 (70%), Positives = 139/194 (71%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYV+GVNE DYGH VANIISNASCTTNCLAPF KVLDEEFGIVKGTMTTTHSYTGDQ Sbjct: 209 DIPTYVMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQ 268
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAVSLVLPQLKGKLNGIALR Sbjct: 269 RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLV 328
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KKGLTAEDVN AFRKAA+GP+KGIL VCD PLVSVDFRC GD Sbjct: 329 INVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGD 388
Query: 541 DMVKVVAWYDNEWG 582 DMVKVVAWYDNEWG Sbjct: 389 DMVKVVAWYDNEWG 402
>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2 Length = 451
Score = 260 bits (665), Expect = 3e-69 Identities = 135/194 (69%), Positives = 141/194 (72%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYV+GVNE DYGH VA+IISNASCTTNCLAPF KVLDEEFGIVKGTMTTTHSYTGDQ Sbjct: 213 DIPTYVIGVNEQDYGHEVADIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQ 272
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAVSLVLPQLKGKLNGIALR Sbjct: 273 RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLV 332
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KKG++AEDVN+AFRKAA+GPLKGIL VCDVPLVSVDFRC GD Sbjct: 333 VNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGD 392
Query: 541 DMVKVVAWYDNEWG 582 DMVKVVAWYDNEWG Sbjct: 393 DMVKVVAWYDNEWG 406
>sp|P09044|G3PB_TOBAC Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1 Length = 438
Score = 259 bits (663), Expect = 5e-69 Identities = 135/194 (69%), Positives = 140/194 (72%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYVVGVNE DY H VA+IISNASCTTNCLAPFVKV+DEE GIVKGTMTTTHSYTGDQ Sbjct: 182 DIPTYVVGVNEQDYSHEVADIISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQ 241
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAVSLVLPQLKGKLNGIALR Sbjct: 242 RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLV 301
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KKG+TAEDVN+AFRKAADGPLKG+LAVCD PLVSVDFRC GD Sbjct: 302 VNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGD 361
Query: 541 DMVKVVAWYDNEWG 582 DMVKVVAWYDNEWG Sbjct: 362 DMVKVVAWYDNEWG 375
>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1 Length = 451
Score = 255 bits (652), Expect = 1e-67 Identities = 134/194 (69%), Positives = 138/194 (71%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYVVGVNE DYGH VANIISNASCTTNCLAPFVKVLDEE GIVKGTMTTTHSYTGDQ Sbjct: 212 DIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQ 271
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAVSLVLPQLKGKLNGIALR Sbjct: 272 RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLV 331
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 K G+TAEDVN+AFRKAA GPLKG+L VCD+PLVSVDFRC G Sbjct: 332 VNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGG 391
Query: 541 DMVKVVAWYDNEWG 582 DMVKVVAWYDNEWG Sbjct: 392 DMVKVVAWYDNEWG 405
>sp|P19866|G3PA_SPIOL Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2 Length = 401
Score = 224 bits (571), Expect = 2e-58 Identities = 120/194 (61%), Positives = 131/194 (67%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYVVGVNE Y H IISNASCTTNCLAPFVKVLD++FGI+KGTMTTTHSYTGDQ Sbjct: 193 DIPTYVVGVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 251
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAV+LVLP LKGKLNGIALR Sbjct: 252 RLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLV 311
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KK AE+VN+AFR++AD LKGIL+VCD PLVS+DFRC GD Sbjct: 312 VQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGD 370
Query: 541 DMVKVVAWYDNEWG 582 DMVKV+AWYDNEWG Sbjct: 371 DMVKVIAWYDNEWG 384
>sp|P50362|G3PA_CHLRE Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1 Length = 374
Score = 223 bits (568), Expect = 5e-58 Identities = 120/194 (61%), Positives = 133/194 (68%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPT+VVGVNEGDY H IISNASCTTNCLAPFVKVL+++FGIVKGTMTTTHSYTGDQ Sbjct: 165 DIPTFVVGVNEGDYKHEYP-IISNASCTTNCLAPFVKVLEQKFGIVKGTMTTTHSYTGDQ 223
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPT+TGAAKAVSLVLP LKGKLNGIALR Sbjct: 224 RLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLV 283
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KK AE+VN+AFR+AA+GP+KG+L V D PLVS+DF+C GD Sbjct: 284 VQVEKKTF-AEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGD 342
Query: 541 DMVKVVAWYDNEWG 582 DMVKVVAWYDNEWG Sbjct: 343 DMVKVVAWYDNEWG 356
>sp|P09672|G3PA_SINAL Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1 Length = 233
Score = 218 bits (555), Expect = 2e-56 Identities = 120/194 (61%), Positives = 128/194 (65%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYVVGVN Y H IISNASCTTNCLAPFVKVLD++FGI+KGTMTTTHSYTGDQ Sbjct: 25 DIPTYVVGVNAELYSH-EDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 83
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAV+LVLP LKGKLNGIALR Sbjct: 84 RLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLV 143
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KK AE+VN+AFR AA+ LKGIL VCD PLVSVDFRC GD Sbjct: 144 VQVSKKTF-AEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGD 202
Query: 541 DMVKVVAWYDNEWG 582 DMVKV+AWYDNEWG Sbjct: 203 DMVKVIAWYDNEWG 216
>sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3 Length = 396
Score = 217 bits (553), Expect = 3e-56 Identities = 119/194 (61%), Positives = 128/194 (65%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYVVGVN Y H IISNASCTTNCLAPFVKVLD++FGI+KGTMTTTHSYTGDQ Sbjct: 188 DIPTYVVGVNADAYSH-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 246
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAV+LVLP LKGKLNGIALR Sbjct: 247 RLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLV 306
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KK AE+VN+AFR +A+ LKGIL VCD PLVSVDFRC GD Sbjct: 307 VQVSKKTF-AEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGD 365
Query: 541 DMVKVVAWYDNEWG 582 DMVKV+AWYDNEWG Sbjct: 366 DMVKVIAWYDNEWG 379
>sp|P09315|G3PA_MAIZE Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1 Length = 403
Score = 216 bits (550), Expect = 7e-56 Identities = 120/194 (61%), Positives = 126/194 (64%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYVVGVN Y IISNASCTTNCLAPFVKVLD++FGI+KGTMTTTHSYTGDQ Sbjct: 195 DIPTYVVGVNADQYNP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 253
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPTSTGAAKAVSLVLP LKGKLNGIALR Sbjct: 254 RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLV 313
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KK L AE+VN AFR AA L GIL VCDVPLVSVDFRC GD Sbjct: 314 VQVSKKTL-AEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGD 372
Query: 541 DMVKVVAWYDNEWG 582 DMVKV++WYDNEWG Sbjct: 373 DMVKVISWYDNEWG 386
>sp|Q8VXQ9|G3PA_SCEVA Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1 Length = 314
Score = 214 bits (546), Expect = 2e-55 Identities = 119/194 (61%), Positives = 129/194 (66%) Frame = +1
Query: 1 DIPTYVVGVNEGDYGH*VANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 180 DIPTYVVGVN DY H A IISNASCTTNCLAPFVKVLDE+FGIVKGTMT THSYTGDQ Sbjct: 123 DIPTYVVGVNAHDYKHSDA-IISNASCTTNCLAPFVKVLDEKFGIVKGTMTNTHSYTGDQ 181
Query: 181 XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXX 360 NIVPT+TGAAKAV+LVLP+LKGKLNGIALR Sbjct: 182 RLLDASHRDLRRARAAALNIVPTTTGAAKAVALVLPKLKGKLNGIALRVPTPNVSVVDLV 241
Query: 361 XXXXKKGLTAEDVNSAFRKAADGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGD 540 KK AE++N+AF++AA G L G+LAV D PLVSVDFRC G Sbjct: 242 VQVEKKTF-AEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGA 300
Query: 541 DMVKVVAWYDNEWG 582 DMVKVVAWYDNEWG Sbjct: 301 DMVKVVAWYDNEWG 314
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QPE5 |
Definition |
tr|A7QPE5|A7QPE5_VITVI Chromosome chr18 scaffold_137, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
194 |
Score (bit) |
265.0 |
E-value |
1.0e-69 |
Report |
|