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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963190
Clone id TST39A01NGRL0015_N22
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_N22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTTGCTTGAACAGTGGGTAATGTGTAAGTTTTGTGTATTGACCTGGTGATTCCCTTTTG
GGGGGAAAATGTCGGCATGGATTGTTGCTCTTGTGAGTTGTAATATTACTACCTTCGAAT
ATGGACATTGGAGCAAAAGGGTTGTAGATATTGATCAAAGATTTACAATCCGTGAGCCCT
TTACTAGGCTTTGGTAATTTCGGAGTAGACATTACAGAGCATAGCTTCTCTCTTGAATAA
TAGGTCTTGAGTTCAACTCCTCGTCGGTTAGATTTTTAAGGTCTCTTGGGATAGTTTCTT
AAGACGCTAAAACTCTTCTCTCTCTCTCTCTCTCAGATGGCCGCACTATGTACGAGAGAC
CCACAAGCTCCTCTCTCTCTCTCCCTCCCCCCTCCCCCCTCCCCCCCAACACAAGAGCCG
AATTTAGAAGGGCTTGTTTCCTAATATAGGTATCGGTATCTCCCATTGGGAGGGGAGTAC
CTTGAGATGGCATCTGTGTTATATCTAATTCATATAACACCGATACCTTAATAGGCTATA
ACAATGAAACTACCAAATTAGGAGTC
■■Homology search results ■■ -
sp_hit_id Q55CT1
Definition sp|Q55CT1|REDB_DICDI NADPH oxidoreductase B OS=Dictyostelium discoideum
Align length 69
Score (bit) 33.1
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963190|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_N22, 5'
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55CT1|REDB_DICDI NADPH oxidoreductase B OS=Dictyostelium dis...    33   0.98 
sp|Q5IS48|DVL1_PANTR Segment polarity protein dishevelled homolo...    33   0.98 
sp|O14640|DVL1_HUMAN Segment polarity protein dishevelled homolo...    33   0.98 
sp|P54792|DVL1L_HUMAN Segment polarity protein dishevelled homol...    33   0.98 
sp|Q6QIY3|SCNAA_MOUSE Sodium channel protein type 10 subunit alp...    30   8.3  
sp|Q2NEL1|EF1A_METST Elongation factor 1-alpha OS=Methanosphaera...    30   8.3  
sp|Q9WVB9|DVL1_RAT Segment polarity protein dishevelled homolog ...    30   8.3  
sp|P51141|DVL1_MOUSE Segment polarity protein dishevelled homolo...    30   8.3  

>sp|Q55CT1|REDB_DICDI NADPH oxidoreductase B OS=Dictyostelium
           discoideum GN=redB PE=2 SV=1
          Length = 667

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = -1

Query: 215 VMSTPKLPKPSKGLTDCKSLINIYNPFAPMSIFEGSNITTHKSNNPCRHFPPKRESPGQY 36
           ++STP  PK S   TD K + ++ NP+    + E   + +++S+  CRH   K      Y
Sbjct: 257 IVSTPLKPKLS---TDNKVIYDMKNPYYA-EVLENRELHSNESDRSCRHIEFKLGDEVSY 312

Query: 35  TKLTHYPLF 9
           T   H  +F
Sbjct: 313 TTGDHLGVF 321


>sp|Q5IS48|DVL1_PANTR Segment polarity protein dishevelled homolog
           DVL-1 OS=Pan troglodytes GN=DVL1 PE=2 SV=1
          Length = 670

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 242 YYSREKLCSVMSTPKLPKPSKGLTDCKSLINIYNPFAPMSIFEGSNITTHKSNNPCRHFP 63
           YY    LCS ++T  L   S G +D  +L  + +P AP  + +G     +    PC  FP
Sbjct: 469 YYVFGDLCSNLATLNLNSGSSGASDQDTLAPLPHPAAPWPLGQGYPY-QYPGPPPC--FP 525

Query: 62  PKRESPG 42
           P  + PG
Sbjct: 526 PAYQDPG 532


>sp|O14640|DVL1_HUMAN Segment polarity protein dishevelled homolog
           DVL-1 OS=Homo sapiens GN=DVL1 PE=1 SV=2
          Length = 695

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 242 YYSREKLCSVMSTPKLPKPSKGLTDCKSLINIYNPFAPMSIFEGSNITTHKSNNPCRHFP 63
           YY    LCS ++T  L   S G +D  +L  + +P AP  + +G     +    PC  FP
Sbjct: 494 YYVFGDLCSNLATLNLNSGSSGTSDQDTLAPLPHPAAPWPLGQGYPY-QYPGPPPC--FP 550

Query: 62  PKRESPG 42
           P  + PG
Sbjct: 551 PAYQDPG 557


>sp|P54792|DVL1L_HUMAN Segment polarity protein dishevelled homolog
           DVL-1-like OS=Homo sapiens GN=DVL1L1 PE=2 SV=1
          Length = 670

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 242 YYSREKLCSVMSTPKLPKPSKGLTDCKSLINIYNPFAPMSIFEGSNITTHKSNNPCRHFP 63
           YY    LCS ++T  L   S G +D  +L  + +P AP  + +G     +    PC  FP
Sbjct: 469 YYVFGDLCSNLATLNLNSGSSGTSDQDTLAPLPHPAAPWPLGQGYPY-QYPGPPPC--FP 525

Query: 62  PKRESPG 42
           P  + PG
Sbjct: 526 PAYQDPG 532


>sp|Q6QIY3|SCNAA_MOUSE Sodium channel protein type 10 subunit alpha
           OS=Mus musculus GN=Scn10a PE=1 SV=2
          Length = 1958

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 455 GISHWEGSTLRWHLC 499
           GIS W G  LRWH+C
Sbjct: 818 GISVWNGERLRWHMC 832


>sp|Q2NEL1|EF1A_METST Elongation factor 1-alpha OS=Methanosphaera
           stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1
          Length = 413

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 140 PFAPMSIFEGSNITTHKSNNP 78
           PF P+S FEG NI+   SN P
Sbjct: 170 PFIPVSAFEGDNISEKSSNTP 190


>sp|Q9WVB9|DVL1_RAT Segment polarity protein dishevelled homolog
           DVL-1 OS=Rattus norvegicus GN=Dvl1 PE=1 SV=3
          Length = 695

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 242 YYSREKLCSVMSTPKLPKPSKGLTDCKSLINIYNPFAPMSIFEGSNITTHKSNNPCRHFP 63
           YY    LCS +++  L   S G +D  +L  + +P  P  + +G     +    PC  FP
Sbjct: 494 YYVFGDLCSNLASLNLNSGSSGASDQDTLAPLPHPSVPWPLGQGYPY-QYPGPPPC--FP 550

Query: 62  PKRESPG 42
           P  + PG
Sbjct: 551 PAYQDPG 557


>sp|P51141|DVL1_MOUSE Segment polarity protein dishevelled homolog
           DVL-1 OS=Mus musculus GN=Dvl1 PE=1 SV=1
          Length = 695

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 242 YYSREKLCSVMSTPKLPKPSKGLTDCKSLINIYNPFAPMSIFEGSNITTHKSNNPCRHFP 63
           YY    LCS +++  L   S G +D  +L  + +P  P  + +G     +    PC  FP
Sbjct: 494 YYVFGDLCSNLASLNLNSGSSGASDQDTLAPLPHPSVPWPLGQGYPY-QYPGPPPC--FP 550

Query: 62  PKRESPG 42
           P  + PG
Sbjct: 551 PAYQDPG 557
tr_hit_id B6W7K3
Definition tr|B6W7K3|B6W7K3_9FIRM Putative uncharacterized protein OS=Anaerococcus hydrogenalis DSM 7454
Align length 63
Score (bit) 36.2
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963190|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_N22, 5'
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6W7K3|B6W7K3_9FIRM Putative uncharacterized protein OS=Anaer...    36   1.3  
tr|B4U7B8|B4U7B8_HYDS0 Hydroxylamine reductase OS=Hydrogenobacul...    34   6.4  
tr|Q5ISL1|Q5ISL1_MACFA Dishevelled 1 (Fragment) OS=Macaca fascic...    34   6.4  

>tr|B6W7K3|B6W7K3_9FIRM Putative uncharacterized protein
           OS=Anaerococcus hydrogenalis DSM 7454 GN=ANHYDRO_00552
           PE=4 SV=1
          Length = 538

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -1

Query: 221 CSVMSTPKLPKPSKGLTDCKSLINIYNPFAPMS--IFEGSNITTHKSNNPCRHFPPKRES 48
           C +      PKP+   T    LINI+N   P    IFE S    ++ N P + +   + S
Sbjct: 136 CKIAEKNNYPKPNISFTVLDKLINIWNSIFPQRTLIFEDSKFFAYERNKPTKKYSANQMS 195

Query: 47  PGQ 39
            G+
Sbjct: 196 DGE 198


>tr|B4U7B8|B4U7B8_HYDS0 Hydroxylamine reductase OS=Hydrogenobaculum
           sp. (strain Y04AAS1) GN=HY04AAS1_0339 PE=3 SV=1
          Length = 548

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 233 REKLCSVMSTPKLPKPSKGLTDCKSLINIYNP-FAPM--SIFEGSNITTHKSNNPCRH 69
           ++KL  ++ TPKLP P +G        NIYNP + P+  S F G  +      +P  H
Sbjct: 367 KDKLAKLIDTPKLPHPGRG-------ANIYNPKYGPLYCSSFIGQGVVACIGTDPKHH 417


>tr|Q5ISL1|Q5ISL1_MACFA Dishevelled 1 (Fragment) OS=Macaca
           fascicularis PE=2 SV=1
          Length = 662

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -1

Query: 242 YYSREKLCSVMSTPKLPKPSKGLTDCKSLINIYNPFAPMSIFEGSNITTHKSNNPCRHFP 63
           YY    LCS ++T  L   S G +D  +L  + +P AP  + +G     ++ + P   FP
Sbjct: 477 YYVFGDLCSNLATLNLNSGSSGASDQDTLAPLPHPAAPWPLGQG---YPYQYSGPPPCFP 533

Query: 62  PKRESPG 42
           P  + PG
Sbjct: 534 PAYQDPG 540