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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963198
Clone id TST39A01NGRL0015_O06
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_O06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGGGCATCATCATGAACCCCTCTCTACAAAAGGGCAGCCTTTCCATCATCTCTTTCTCCG
AGGCTCGAGCTAGCTGTTTTTGCCGAAAAAGAACTTGCACAGACACCCACACCACGCGCC
TTACTTCCCCAGGTCCCCTCCCTCCTACCGCCCTCCCACCTCAACAGTCACAGACACTGT
CGCAACACGCGCATATATACATGATACATACACACATAAACCTCTTTTGTCCCCTTCAGT
CCTGCTTTACCATCATCATCTCCTCTCCCCTCTCAGTCTCCTCTTTCGCCCCTTTGTGTC
CCCCTCCTCCAATCCTAGCATTTAAGGGTCATTCTGATCGTCACCGCCTTGCAATATTAA
GCGTCTTTGCAGCCGAGTTCTAGATCCGCATCCGTCCTTCTGGAGCTCGCCATAAAAACT
CCAGCTTTTGATTTGTAATCCTCCTTTTAGGGCCGTGGTTCATGCGCAACAGTAGACCGT
CTTAGTGATGTTGGTGCTCTGTGAATCTTTACCATCTTGCACACGCTGTGCTAAAAAGTT
GCTGCACATACGCTGCAAGGATCCACTCTGAAGGCTCTCTAAATTATGGTGTAGAATTGC
TCGGCAGTTAGGGACTTGGAGGGCACAGAGATGGTGTGACTCGAAGGATCAAGGTGTAGG
GAGAGCGAAAGCATGGTCTAGGCT
■■Homology search results ■■ -
sp_hit_id A4IYB1
Definition sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate transferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418)
Align length 100
Score (bit) 32.0
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963198|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O06, 5'
         (684 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.2  
sp|Q5NH42|MIAA_FRATT tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.2  
sp|Q0BM87|MIAA_FRATO tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.2  
sp|A0Q6S4|MIAA_FRATN tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.2  
sp|Q2A3T6|MIAA_FRATH tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.2  
sp|A7NBS1|MIAA_FRATF tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.2  
sp|Q14IJ4|MIAA_FRAT1 tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.2  
sp|Q4PBF2|NOP58_USTMA Nucleolar protein NOP58 OS=Ustilago maydis...    31   7.1  
sp|Q7TM95|TIGD3_MOUSE Tigger transposable element-derived protei...    30   9.1  

>sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. tularensis
           (strain WY96-3418) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q5NH42|MIAA_FRATT tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. tularensis
           GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q0BM87|MIAA_FRATO tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. holarctica
           (strain OSU18) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|A0Q6S4|MIAA_FRATN tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. novicida
           (strain U112) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EELKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLRKNRMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q2A3T6|MIAA_FRATH tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. holarctica
           (strain LVS) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|A7NBS1|MIAA_FRATF tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. holarctica
           (strain FTA) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q14IJ4|MIAA_FRAT1 tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. tularensis
           (strain FSC 198) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q4PBF2|NOP58_USTMA Nucleolar protein NOP58 OS=Ustilago maydis
           GN=NOP58 PE=3 SV=1
          Length = 582

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 21/87 (24%), Positives = 36/87 (41%)
 Frame = -1

Query: 585 NLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA*TTALKGGLQIKSWSFYGE 406
           ++ ++  G + +    FL   + +GK  +  N+       A   A K G+Q+   ++  E
Sbjct: 60  DISAINEGKMSKSLKKFLTDEIVEGKGKEKENLIVAESKLASNIAKKLGIQV---TYDSE 116

Query: 405 LQKDGCGSRTRLQRRLILQGGDDQNDP 325
           L     G R  L   L    GD+  DP
Sbjct: 117 LLDLYRGIRENLATLLSSSSGDESLDP 143


>sp|Q7TM95|TIGD3_MOUSE Tigger transposable element-derived protein 3
           OS=Mus musculus GN=Tigd3 PE=2 SV=1
          Length = 470

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 21/36 (58%), Positives = 21/36 (58%)
 Frame = +3

Query: 267 PLSVSSFAPLCPPPPILAFKGHSDRHRLAILSVFAA 374
           PLS SS  P  P   ILAFK H  RHRL  LS  AA
Sbjct: 286 PLSASSTTPSLPGSVILAFKAHY-RHRL--LSKLAA 318
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963198|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O06, 5'
         (684 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******