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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963199
Clone id TST39A01NGRL0015_O07
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_O07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATTTCAAGGCTGGCAGTGAGGTTAACAACTTATTGCATTTGGTTTTGGGAGCACAAGATG
AGCTGGATTTGAATGAAGCCCCTGATATCAGGCCTCGAATAGAGAATATGATGCCCTATT
CAACAAGCGGGCATTTGGAAGGGGGAAAAGCATTACCAGATGCTACTTGCATTGAGAAGG
GTGAATACAGAGAGTCCCGTCACTTGGCAGAAGATCAACGTAAAGCGGCCACATTGTGCG
CAGGCTTTGCTTTGGCCTCAAGTAGTCTGGGCATCGAGGAAAATGTTGAATCCACTCTGA
AGGCATGCGTAGTTGTACTTGTTGATGACTTGTGGGATCAGGCAATCACATCAGGGATTG
CTATTCAACTAGATGATGTAGAAATAGACAATGAAATTGTTCTGAGGAAAGCAAGGGAGC
TGGCAGACTCAGTTCCTGCTGGAGAAGTTTACACCAGATAACTAATGAGGACGTTGGAGG
TGAAAACAAAGAAACCTTTCAGTCCAGAAAATGAAATGCACAAGCATTTGAAAAAAATAC
GGAGAGAGCGACTTGAAAAG
■■Homology search results ■■ -
sp_hit_id Q65RF1
Definition sp|Q65RF1|FOLD_MANSM Bifunctional protein folD OS=Mannheimia succiniciproducens (strain MBEL55E)
Align length 76
Score (bit) 33.1
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963199|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O07, 5'
         (560 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q65RF1|FOLD_MANSM Bifunctional protein folD OS=Mannheimia suc...    33   0.96 
sp|A5GQ30|SECA_SYNR3 Protein translocase subunit secA OS=Synecho...    32   2.8  
sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625 OS=Methanoc...    30   6.2  
sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS...    30   8.1  

>sp|Q65RF1|FOLD_MANSM Bifunctional protein folD OS=Mannheimia
           succiniciproducens (strain MBEL55E) GN=folD PE=3 SV=2
          Length = 283

 Score = 33.1 bits (74), Expect = 0.96
 Identities = 25/76 (32%), Positives = 37/76 (48%)
 Frame = +3

Query: 144 GKALPDATCIEKGEYRESRHLAEDQRKAATLCAGFALASSSLGIEENVESTLKACVVVLV 323
           GK  P    I  G    S+     +RK+   CA   + S S  +EE   ST +A ++ L+
Sbjct: 30  GKRAPGLAVILVGADPASQVYVGSKRKS---CAEIGINSKSYDLEE---STSEAALLTLI 83

Query: 324 DDLWDQAITSGIAIQL 371
           D+L + A   GI +QL
Sbjct: 84  DELNNDADIDGILVQL 99


>sp|A5GQ30|SECA_SYNR3 Protein translocase subunit secA
           OS=Synechococcus sp. (strain RCC307) GN=secA PE=3 SV=2
          Length = 946

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +3

Query: 210 EDQRKAATLCAGFALASSSLGIEENVESTLKACVVVLVDDLWDQAITSGIAIQ---LDDV 380
           E QR       G+A A S LG+E+   +           D W   +T+ +  +   + DV
Sbjct: 270 EKQRSVILTDEGYAKAESILGVEDLFNAA----------DPWAHYVTNALKAKELFIKDV 319

Query: 381 EI---DNEIVLRKARELADSVPAGEVYTR*LMRTLEVKTKKPFSPENE 515
                DNE+V+    E    V  G  ++  L + +E K   P  PE +
Sbjct: 320 NYITRDNEVVI--VDEFTGRVMPGRRWSDGLHQAVEAKESMPIQPETQ 365


>sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625
           OS=Methanocaldococcus jannaschii GN=MJ1625 PE=4 SV=1
          Length = 671

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = +3

Query: 267 LGIEENVESTLKACVVVLVDDLWDQAITSGIAIQLDDVEIDN-EIVLRKARELADSVPAG 443
           LG+ EN+   +   ++ L  ++ D+ I   +++ +     +N E    KA++L + +   
Sbjct: 375 LGLIENINENIGEIIIRLKSEVDDKVIEERVSLDIRKNAFENAESYYEKAKKLRNKIEGI 434

Query: 444 EVYTR*LMRTLEVKTKKPFS--PENEMHKHLKKIRRER 551
           E       + +E   KK      E E  +  KKIR+ER
Sbjct: 435 ENAIELTKKKIEELKKKGEEELKEKESMQMKKKIRKER 472


>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic
           OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2
           SV=1
          Length = 607

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 327 DLWDQAITSGIAIQLDDVEID 389
           +LW  AI S +A+ LDD E+D
Sbjct: 485 ELWTNAIESSVALMLDDAEVD 505
tr_hit_id Q5WEU3
Definition tr|Q5WEU3|Q5WEU3_BACSK Chemotaxis protein histidine kinase CheA OS=Bacillus clausii (strain KSM-K16)
Align length 139
Score (bit) 37.7
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963199|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O07, 5'
         (560 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5WEU3|Q5WEU3_BACSK Chemotaxis protein histidine kinase CheA ...    38   0.43 
tr|Q3A500|Q3A500_PELCD Flp pilus assembly protein TadD OS=Peloba...    34   6.2  
tr|A8QB55|A8QB55_BRUMA Growth-Arrest-Specific Protein 2 Domain c...    33   8.1  

>tr|Q5WEU3|Q5WEU3_BACSK Chemotaxis protein histidine kinase CheA
           OS=Bacillus clausii (strain KSM-K16) GN=cheA PE=4 SV=1
          Length = 648

 Score = 37.7 bits (86), Expect = 0.43
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
 Frame = +3

Query: 15  SEVNNLLHLVLGAQDELDLNEAPDIRPRIENMMPYSTSGHLEGGKALPDATCIEKGEYRE 194
           +E+    H + G    +  N   ++   +EN++     G++E G    D    +  EY E
Sbjct: 39  AEIFRSAHTLKGMSATMGFNAMAELTHSLENLLDAMRDGNIEAGAGEIDLL-FDAVEYLE 97

Query: 195 S-----RHLAEDQRKAATLCAGFALASSSLGIEENVESTLKACVVVLVDDLWDQAITSGI 359
           +     R+   +  +A  L   FA     LG E    + + A +      + DQA+  G+
Sbjct: 98  ASVSHVRNTGGELEEANGLRDTFA---QLLGQERKSANEVAASLDTDTHAVMDQAVQDGV 154

Query: 360 AIQLDDVEIDNEIVLRKAR 416
            +Q+  VEID+   L+  R
Sbjct: 155 PVQVIHVEIDDNAALKGVR 173


>tr|Q3A500|Q3A500_PELCD Flp pilus assembly protein TadD
           OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
           GN=Pcar_1308 PE=4 SV=1
          Length = 272

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
 Frame = +3

Query: 138 EGGKALPDATCIEKG--EYRESRHLAEDQRKA----ATLCAGFALASSSLGIEENVESTL 299
           E G+AL     +  G  EYRE+  L E  RKA    + +  G A   S+LG +E+ +  L
Sbjct: 109 EAGEALARMGIVHAGREEYREALDLLEQARKADPDSSFVLNGLAQVYSALGRQEDAQKVL 168

Query: 300 KACVVVLVDDLWDQAITSGIAIQLDDVEID------NEIVLRKARELADSVP 437
           +  + +  +D       S I + L ++E+D       E + R+  EL   +P
Sbjct: 169 RQALQIDSED-------SQILLALGELELDMGHTDVAERLYRQVLELEADLP 213


>tr|A8QB55|A8QB55_BRUMA Growth-Arrest-Specific Protein 2 Domain
            containing protein OS=Brugia malayi GN=Bm1_47925 PE=4
            SV=1
          Length = 3625

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 279  ENVESTLKACVVVLVDDLWDQAITSGIAIQLDDVEIDNEIVLRKARELADSVPAGE---- 446
            ENV   L+A +  + + L    I+ GI  Q    + + +IVL  A+E A+S+   +    
Sbjct: 1177 ENVTGDLRALLKDVNNILQKAQISKGIQKQFSKKKEEAQIVLDAAKETAESLKRADSISS 1236

Query: 447  VYTR*LMRTLEVKTKKPFSPENEMHKHLKKI 539
            +    L++T++    K    E E+H  LK +
Sbjct: 1237 ITKEVLLKTIDDLENKWHKKERELHAALKDV 1267