DK963199
Clone id TST39A01NGRL0015_O07
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_O07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATTTCAAGGCTGGCAGTGAGGTTAACAACTTATTGCATTTGGTTTTGGGAGCACAAGATG
AGCTGGATTTGAATGAAGCCCCTGATATCAGGCCTCGAATAGAGAATATGATGCCCTATT
CAACAAGCGGGCATTTGGAAGGGGGAAAAGCATTACCAGATGCTACTTGCATTGAGAAGG
GTGAATACAGAGAGTCCCGTCACTTGGCAGAAGATCAACGTAAAGCGGCCACATTGTGCG
CAGGCTTTGCTTTGGCCTCAAGTAGTCTGGGCATCGAGGAAAATGTTGAATCCACTCTGA
AGGCATGCGTAGTTGTACTTGTTGATGACTTGTGGGATCAGGCAATCACATCAGGGATTG
CTATTCAACTAGATGATGTAGAAATAGACAATGAAATTGTTCTGAGGAAAGCAAGGGAGC
TGGCAGACTCAGTTCCTGCTGGAGAAGTTTACACCAGATAACTAATGAGGACGTTGGAGG
TGAAAACAAAGAAACCTTTCAGTCCAGAAAATGAAATGCACAAGCATTTGAAAAAAATAC
GGAGAGAGCGACTTGAAAAG
■■Homology search results ■■ -
sp_hit_id Q65RF1
Definition sp|Q65RF1|FOLD_MANSM Bifunctional protein folD OS=Mannheimia succiniciproducens (strain MBEL55E)
Align length 76
Score (bit) 33.1
E-value 0.96
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963199|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O07, 5'
(560 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q65RF1|FOLD_MANSM Bifunctional protein folD OS=Mannheimia suc... 33 0.96
sp|A5GQ30|SECA_SYNR3 Protein translocase subunit secA OS=Synecho... 32 2.8
sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625 OS=Methanoc... 30 6.2
sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS... 30 8.1

>sp|Q65RF1|FOLD_MANSM Bifunctional protein folD OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=folD PE=3 SV=2
Length = 283

Score = 33.1 bits (74), Expect = 0.96
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +3

Query: 144 GKALPDATCIEKGEYRESRHLAEDQRKAATLCAGFALASSSLGIEENVESTLKACVVVLV 323
GK P I G S+ +RK+ CA + S S +EE ST +A ++ L+
Sbjct: 30 GKRAPGLAVILVGADPASQVYVGSKRKS---CAEIGINSKSYDLEE---STSEAALLTLI 83

Query: 324 DDLWDQAITSGIAIQL 371
D+L + A GI +QL
Sbjct: 84 DELNNDADIDGILVQL 99


>sp|A5GQ30|SECA_SYNR3 Protein translocase subunit secA
OS=Synechococcus sp. (strain RCC307) GN=secA PE=3 SV=2
Length = 946

Score = 31.6 bits (70), Expect = 2.8
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Frame = +3

Query: 210 EDQRKAATLCAGFALASSSLGIEENVESTLKACVVVLVDDLWDQAITSGIAIQ---LDDV 380
E QR G+A A S LG+E+ + D W +T+ + + + DV
Sbjct: 270 EKQRSVILTDEGYAKAESILGVEDLFNAA----------DPWAHYVTNALKAKELFIKDV 319

Query: 381 EI---DNEIVLRKARELADSVPAGEVYTR*LMRTLEVKTKKPFSPENE 515
DNE+V+ E V G ++ L + +E K P PE +
Sbjct: 320 NYITRDNEVVI--VDEFTGRVMPGRRWSDGLHQAVEAKESMPIQPETQ 365


>sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625
OS=Methanocaldococcus jannaschii GN=MJ1625 PE=4 SV=1
Length = 671

Score = 30.4 bits (67), Expect = 6.2
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +3

Query: 267 LGIEENVESTLKACVVVLVDDLWDQAITSGIAIQLDDVEIDN-EIVLRKARELADSVPAG 443
LG+ EN+ + ++ L ++ D+ I +++ + +N E KA++L + +
Sbjct: 375 LGLIENINENIGEIIIRLKSEVDDKVIEERVSLDIRKNAFENAESYYEKAKKLRNKIEGI 434

Query: 444 EVYTR*LMRTLEVKTKKPFS--PENEMHKHLKKIRRER 551
E + +E KK E E + KKIR+ER
Sbjct: 435 ENAIELTKKKIEELKKKGEEELKEKESMQMKKKIRKER 472


>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic
OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2
SV=1
Length = 607

Score = 30.0 bits (66), Expect = 8.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3

Query: 327 DLWDQAITSGIAIQLDDVEID 389
+LW AI S +A+ LDD E+D
Sbjct: 485 ELWTNAIESSVALMLDDAEVD 505


tr_hit_id Q5WEU3
Definition tr|Q5WEU3|Q5WEU3_BACSK Chemotaxis protein histidine kinase CheA OS=Bacillus clausii (strain KSM-K16)
Align length 139
Score (bit) 37.7
E-value 0.43
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963199|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O07, 5'
(560 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5WEU3|Q5WEU3_BACSK Chemotaxis protein histidine kinase CheA ... 38 0.43
tr|Q3A500|Q3A500_PELCD Flp pilus assembly protein TadD OS=Peloba... 34 6.2
tr|A8QB55|A8QB55_BRUMA Growth-Arrest-Specific Protein 2 Domain c... 33 8.1

>tr|Q5WEU3|Q5WEU3_BACSK Chemotaxis protein histidine kinase CheA
OS=Bacillus clausii (strain KSM-K16) GN=cheA PE=4 SV=1
Length = 648

Score = 37.7 bits (86), Expect = 0.43
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Frame = +3

Query: 15 SEVNNLLHLVLGAQDELDLNEAPDIRPRIENMMPYSTSGHLEGGKALPDATCIEKGEYRE 194
+E+ H + G + N ++ +EN++ G++E G D + EY E
Sbjct: 39 AEIFRSAHTLKGMSATMGFNAMAELTHSLENLLDAMRDGNIEAGAGEIDLL-FDAVEYLE 97

Query: 195 S-----RHLAEDQRKAATLCAGFALASSSLGIEENVESTLKACVVVLVDDLWDQAITSGI 359
+ R+ + +A L FA LG E + + A + + DQA+ G+
Sbjct: 98 ASVSHVRNTGGELEEANGLRDTFA---QLLGQERKSANEVAASLDTDTHAVMDQAVQDGV 154

Query: 360 AIQLDDVEIDNEIVLRKAR 416
+Q+ VEID+ L+ R
Sbjct: 155 PVQVIHVEIDDNAALKGVR 173


>tr|Q3A500|Q3A500_PELCD Flp pilus assembly protein TadD
OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
GN=Pcar_1308 PE=4 SV=1
Length = 272

Score = 33.9 bits (76), Expect = 6.2
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Frame = +3

Query: 138 EGGKALPDATCIEKG--EYRESRHLAEDQRKA----ATLCAGFALASSSLGIEENVESTL 299
E G+AL + G EYRE+ L E RKA + + G A S+LG +E+ + L
Sbjct: 109 EAGEALARMGIVHAGREEYREALDLLEQARKADPDSSFVLNGLAQVYSALGRQEDAQKVL 168

Query: 300 KACVVVLVDDLWDQAITSGIAIQLDDVEID------NEIVLRKARELADSVP 437
+ + + +D S I + L ++E+D E + R+ EL +P
Sbjct: 169 RQALQIDSED-------SQILLALGELELDMGHTDVAERLYRQVLELEADLP 213


>tr|A8QB55|A8QB55_BRUMA Growth-Arrest-Specific Protein 2 Domain
containing protein OS=Brugia malayi GN=Bm1_47925 PE=4
SV=1
Length = 3625

Score = 33.5 bits (75), Expect = 8.1
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +3

Query: 279 ENVESTLKACVVVLVDDLWDQAITSGIAIQLDDVEIDNEIVLRKARELADSVPAGE---- 446
ENV L+A + + + L I+ GI Q + + +IVL A+E A+S+ +
Sbjct: 1177 ENVTGDLRALLKDVNNILQKAQISKGIQKQFSKKKEEAQIVLDAAKETAESLKRADSISS 1236

Query: 447 VYTR*LMRTLEVKTKKPFSPENEMHKHLKKI 539
+ L++T++ K E E+H LK +
Sbjct: 1237 ITKEVLLKTIDDLENKWHKKERELHAALKDV 1267