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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963208
Clone id TST39A01NGRL0015_O16
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_O16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATTTGAACAGACAATGGCGAGAAGGCTATTTCATGCCATATCTCACCAGTCCATCGGTTG
GCTAGCTACTCGCGGGACGCAAGTGCCTTCTCCAGTCTCCCATCTCTGCGATCCTGTAAG
CAAGCACCCATGGATGCTTACGACCGTTCAGCATTATGCGAAACGGCGCAGCAAGTTTGC
CAAAGATCCTTATGCGTGGATTAAAGTGGGAAAAGATGAGGAGTGCCCATCTTCACAGCC
TAACAAAGGCAGTGTGAAGAACAGAAATCAAAAGAAGCGCATGGCTCAGAAAGCTGCTTT
TATCAAGGCAGAGGCTCAGAAACGTATTGCACAATGCAAAGCAGCTGATGCCAAGAGACT
AGAAGCGCGAAAAAAGCGGTGGAAAGAGGGCGCAGCTCGGGCTCGAGCTTGGAAAGAAAA
GAAGCTAGCAGAAGCAAAGGAAGCTTAAGCTCAGCAAGCTCAAGAACTGGCTGCAGCCTG
AAGCCTTTAAGTTGGCTCTCTAAAGGAATGTTTTTCAGAAAATCATACATCTTTGTTGCT
TTGATGATGGGTGCCCGGACACCAAGGAATAGAAGACGTGGTTGATGGTCTGC
■■Homology search results ■■ -
sp_hit_id Q20970
Definition sp|Q20970|SYMC_CAEEL Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans
Align length 92
Score (bit) 33.5
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963208|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O16, 5'
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q20970|SYMC_CAEEL Methionyl-tRNA synthetase, cytoplasmic OS=C...    33   0.82 
sp|Q5R9U7|BAP29_PONAB B-cell receptor-associated protein 29 OS=P...    32   3.1  
sp|Q9UHQ4|BAP29_HUMAN B-cell receptor-associated protein 29 OS=H...    32   3.1  
sp|O58495|IORA_PYRHO Indolepyruvate oxidoreductase subunit iorA ...    31   4.1  
sp|A6S9N4|PAN1_BOTFB Actin cytoskeleton-regulatory complex prote...    30   7.0  
sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associat...    30   7.0  
sp|Q3SVN4|SECA_NITWN Protein translocase subunit secA OS=Nitroba...    30   9.1  
sp|A4YKV0|SECA_BRASO Protein translocase subunit secA OS=Bradyrh...    30   9.1  
sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associat...    30   9.1  

>sp|Q20970|SYMC_CAEEL Methionyl-tRNA synthetase, cytoplasmic
           OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1
          Length = 917

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +2

Query: 86  PSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNR 265
           PSP+    DP              A+ ++KF     A     K  E P  Q  +   K++
Sbjct: 570 PSPLFQKLDPAQ-----------IAEFKAKFGGSQDAQSSAPKTAEKPKQQKKQAPTKDK 618

Query: 266 NQKKRMAQKAAFIKAE-AQKRIAQCKAADAKR 358
              K+MA  AAF++ E   K I+Q  A + K+
Sbjct: 619 KGDKKMASTAAFVELEQGAKVISQLIAQNLKK 650


>sp|Q5R9U7|BAP29_PONAB B-cell receptor-associated protein 29
           OS=Pongo abelii GN=BCAP29 PE=2 SV=1
          Length = 241

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +2

Query: 59  WLATRGTQVPSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKV----GKDEEC 226
           WL  R  ++ + ++ L   +S    + T  ++  K   KF ++     ++    GKDEEC
Sbjct: 114 WLVLR--RLVTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKRILKSHGKDEEC 171

Query: 227 PSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 340
                NK  V+++ + K   +K +   ++AQ  + + K
Sbjct: 172 VLEAENKKLVEDQQKLKTELRKTSDALSKAQNDVMEMK 209


>sp|Q9UHQ4|BAP29_HUMAN B-cell receptor-associated protein 29 OS=Homo
           sapiens GN=BCAP29 PE=1 SV=2
          Length = 241

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +2

Query: 59  WLATRGTQVPSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKV----GKDEEC 226
           WL  R  ++ + ++ L   +S    + T  ++  K   KF ++     ++    GKDEEC
Sbjct: 114 WLVLR--RLVTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKRILKSHGKDEEC 171

Query: 227 PSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 340
                NK  V+++ + K   +K +   ++AQ  + + K
Sbjct: 172 VLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMK 209


>sp|O58495|IORA_PYRHO Indolepyruvate oxidoreductase subunit iorA
           OS=Pyrococcus horikoshii GN=iorA PE=3 SV=1
          Length = 648

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 122 KHPWMLTTVQHYAKRRSKFAKDPYAWIKVGKD 217
           KHPW+L T++   K R +F   P+ WI+  +D
Sbjct: 222 KHPWLLETIE---KFREEFNTSPFNWIEGPED 250


>sp|A6S9N4|PAN1_BOTFB Actin cytoskeleton-regulatory complex protein
            pan1 OS=Botryotinia fuckeliana (strain B05.10) GN=pan1
            PE=3 SV=1
          Length = 1444

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 221  ECPSSQPNKGSVK---NRNQKKRMAQKAAFIKAEAQKRIAQCKAA 346
            E PSSQP+        + +Q K    +AA+IK +A+KR+A+  AA
Sbjct: 925  ETPSSQPSSTPTPAGGSYSQYKTPEDRAAYIKQQAEKRMAERLAA 969


>sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associated
           protein homolog (Fragment) OS=Ovis aries GN=ASPM PE=2
           SV=1
          Length = 3374

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +2

Query: 50  SIGWLATRGTQVPSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKVGKDEECP 229
           SI W   +G +V   V+ L + + KH  +L       K++ +       W  + K +   
Sbjct: 38  SITWTPLKGGRVRETVTFLVNDILKHQAILLGNAEEPKKKKR-----TLWDTINKKKVSA 92

Query: 230 SSQPNK--GSVKNRNQKKRMAQKAAFIKAEAQ 319
           SS+ NK   +++N N+   ++ KA  +++  Q
Sbjct: 93  SSRHNKKVSNIQNVNKTFNVSPKADKVRSPLQ 124


>sp|Q3SVN4|SECA_NITWN Protein translocase subunit secA OS=Nitrobacter
            winogradskyi (strain Nb-255 / ATCC 25391) GN=secA PE=3
            SV=1
          Length = 953

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
 Frame = +2

Query: 83   VPSPVSHLCDPVSKHPWMLTTVQHYAK----------RRSKFAKDPYAWIKVGKDEECPS 232
            +P   +H  DP +    M      +A+          R  +   DP +W KVG++E+CP 
Sbjct: 880  LPEMEAHKLDPNTGEDEMALAQSSFARASLASEGSEGRSRRDPNDPESWGKVGRNEDCPC 939

Query: 233  SQPNK 247
                K
Sbjct: 940  GSGKK 944


>sp|A4YKV0|SECA_BRASO Protein translocase subunit secA
           OS=Bradyrhizobium sp. (strain ORS278) GN=secA PE=3 SV=1
          Length = 950

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 182 KDPYAWIKVGKDEECPSSQPNK 247
           KDP  W KVG++E+CP     K
Sbjct: 920 KDPTTWGKVGRNEDCPCGSGKK 941


>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated
           protein homolog (Fragment) OS=Bos taurus GN=ASPM PE=2
           SV=1
          Length = 3371

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +2

Query: 50  SIGWLATRGTQVPSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKVGKDEECP 229
           SI W   +G ++   ++ L + + KH  +L       K++ +       W  + K +   
Sbjct: 38  SITWTPLKGGRIRETITFLVNDILKHQAILLGNAEEPKKKKR-----TLWDTINKKKASA 92

Query: 230 SSQPNK--GSVKNRNQKKRMAQKAAFIKAEAQ 319
           SS+ NK   +++N N+   ++ KA  +++  Q
Sbjct: 93  SSRHNKKASNIQNVNKTFNVSPKADRVRSPLQ 124
tr_hit_id A9RIG4
Definition tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 77
Score (bit) 68.2
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963208|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O16, 5'
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella paten...    68   3e-10
tr|B6TLW1|B6TLW1_MAIZE Putative uncharacterized protein OS=Zea m...    66   2e-09
tr|Q75IM4|Q75IM4_ORYSJ Os05g0126200 protein OS=Oryza sativa subs...    65   3e-09
tr|A2XZX6|A2XZX6_ORYSI Putative uncharacterized protein OS=Oryza...    65   3e-09
tr|A9NXH5|A9NXH5_PICSI Putative uncharacterized protein OS=Picea...    58   4e-07
tr|A5AL27|A5AL27_VITVI Putative uncharacterized protein (Chromos...    57   1e-06
tr|Q9SD44|Q9SD44_ARATH Putative uncharacterized protein F24M12.5...    55   4e-06
tr|Q8LEP2|Q8LEP2_ARATH Putative uncharacterized protein OS=Arabi...    55   4e-06
tr|B4PLV9|B4PLV9_DROYA GE23392 OS=Drosophila yakuba GN=GE23392 P...    37   0.85 
tr|B3P594|B3P594_DROER GG11940 OS=Drosophila erecta GN=GG11940 P...    35   2.5  
tr|A6G2S7|A6G2S7_9DELT Putative endonuclease OS=Plesiocystis pac...    34   7.2  
tr|Q9VA82|Q9VA82_DROME CG15535 OS=Drosophila melanogaster GN=CG1...    34   7.2  
tr|Q4V6S1|Q4V6S1_DROME IP08115p (Fragment) OS=Drosophila melanog...    34   7.2  
tr|B4R1L5|B4R1L5_DROSI GD17123 OS=Drosophila simulans GN=GD17123...    34   7.2  
tr|B7PKW1|B7PKW1_IXOSC Putative uncharacterized protein (Fragmen...    33   9.4  

>tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159272 PE=4 SV=1
          Length = 219

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
 Frame = +2

Query: 146 VQHYAKRRSKFAKDPYAWIKVGKD-EECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEA-- 316
           V+HYAKR  K+   PYA + V  + EE P S+PN+GSV+NRN +KRMAQ+A F K +A  
Sbjct: 78  VRHYAKRAKKWQGAPYAMLPVPPEGEEIPDSRPNQGSVRNRNHQKRMAQRAEFAKMQAHT 137

Query: 317 ---QKRIAQCKAADAKR 358
              QKRIA      A+R
Sbjct: 138 RREQKRIAITARDTARR 154


>tr|B6TLW1|B6TLW1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 187

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
 Frame = +2

Query: 20  RRLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPY 193
           RR    I  +S    A   +Q P   + L   +  ++ P       +  KR S   K PY
Sbjct: 36  RRFLDPIGLRSFSAAAATASQAPPMGATLFGGLMDTRFPKRRPGFANRRKRASLRPKGPY 95

Query: 194 AWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 346
            W+K   DE  P SQPN+GSV+ R +KKR+ Q+  FI AE +KR AQ  AA
Sbjct: 96  YWVKCKPDEPIPVSQPNQGSVRGRKEKKRIKQRKDFIMAEKKKRRAQYSAA 146


>tr|Q75IM4|Q75IM4_ORYSJ Os05g0126200 protein OS=Oryza sativa subsp.
           japonica GN=P0683F12.6 PE=2 SV=1
          Length = 192

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
 Frame = +2

Query: 23  RLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPYA 196
           RL   I  +     A   +Q PS  + L   +  ++ P      +   KR S   K PY 
Sbjct: 42  RLLDPIGLRPFSAAAATASQAPSMGAGLFSGLMDTRFPKRRPGFKSRRKRASLRPKGPYY 101

Query: 197 WIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 346
           W+K    E  P++QPN+GSV+ R +KKR+ Q+ AFI AE +KR AQ  AA
Sbjct: 102 WVKCKPGEPIPANQPNEGSVQGRKEKKRIKQRKAFIMAEKKKRKAQYSAA 151


>tr|A2XZX6|A2XZX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18285 PE=4 SV=1
          Length = 192

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
 Frame = +2

Query: 23  RLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPYA 196
           RL   I  +     A   +Q PS  + L   +  ++ P      +   KR S   K PY 
Sbjct: 42  RLLDPIGLRPFSAAAATASQAPSMGAGLFSGLMDTRFPKRRPGFKSRRKRASLRPKGPYY 101

Query: 197 WIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 346
           W+K    E  P++QPN+GSV+ R +KKR+ Q+ AFI AE +KR AQ  AA
Sbjct: 102 WVKCKPGEPIPANQPNEGSVQGRKEKKRIKQRKAFIMAEKKKRKAQYSAA 151


>tr|A9NXH5|A9NXH5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 216

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
 Frame = +2

Query: 161 KRRSKFA----KDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 328
           K+R+K A    K P+ WI+    E  P S+PN+GSV+ RN +KRM Q++AF   EAQKR 
Sbjct: 110 KKRNKRAYLRPKGPHYWIQYTPGEPIPHSRPNEGSVRGRNHRKRMEQRSAFRSGEAQKRK 169

Query: 329 AQCKAADAKR 358
            Q   A  ++
Sbjct: 170 DQLAGARRRK 179


>tr|A5AL27|A5AL27_VITVI Putative uncharacterized protein (Chromosome
           chr4 scaffold_83, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00036864001 PE=4 SV=1
          Length = 182

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 29/66 (43%), Positives = 40/66 (60%)
 Frame = +2

Query: 161 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 340
           KR S     PYAW++    E    ++PN+GSVK R +KKRM  + AFI +EA+KR  Q +
Sbjct: 80  KRASLRPPGPYAWVQYVPGERILPNRPNEGSVKGRKEKKRMRLRRAFILSEAKKRKTQLQ 139

Query: 341 AADAKR 358
            A  K+
Sbjct: 140 EAKRKK 145


>tr|Q9SD44|Q9SD44_ARATH Putative uncharacterized protein F24M12.50
           (At3g51010) OS=Arabidopsis thaliana GN=At3g51010 PE=2
           SV=1
          Length = 188

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
 Frame = +2

Query: 152 HYAKRRSKFAKD-PYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 328
           H  ++RSK     PYA+++    +   S+ PN+GSVK RN KKR+ Q+ AFI +E +KR 
Sbjct: 81  HPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQ 140

Query: 329 AQCKAADAKR 358
           A  + A  K+
Sbjct: 141 ALVQEAKRKK 150


>tr|Q8LEP2|Q8LEP2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 188

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
 Frame = +2

Query: 152 HYAKRRSKFAKD-PYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 328
           H  ++RSK     PYA+++    +   S+ PN+GSVK RN KKR+ Q+ AFI +E +KR 
Sbjct: 81  HPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQ 140

Query: 329 AQCKAADAKR 358
           A  + A  K+
Sbjct: 141 ALVQEAKRKK 150


>tr|B4PLV9|B4PLV9_DROYA GE23392 OS=Drosophila yakuba GN=GE23392 PE=4
           SV=1
          Length = 118

 Score = 37.0 bits (84), Expect = 0.85
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +2

Query: 161 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 340
           K   K A +   + K   +++    +PNK  ++N  +K++ AQ+AA  +    +R AQ K
Sbjct: 18  KGPGKVAHNQKPYFKSKNNQKAKGEKPNKPEIRNMKRKEKAAQEAAEREKVRAERDAQVK 77

Query: 341 AADAKRL 361
           A   KRL
Sbjct: 78  AYKKKRL 84


>tr|B3P594|B3P594_DROER GG11940 OS=Drosophila erecta GN=GG11940 PE=4
           SV=1
          Length = 118

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 161 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 340
           K   K A +   + K    ++    +PNK  ++N  +K++ AQ+AA  +    +R AQ K
Sbjct: 18  KGPGKVAHNQKPYFKNKNKQKAKGDKPNKPEIRNLKRKEKAAQEAAQREKVRAERDAQVK 77

Query: 341 AADAKRL 361
           A   KRL
Sbjct: 78  AYKKKRL 84