DK963230 |
Clone id |
TST39A01NGRL0015_P15 |
Library |
TST39 |
Length |
410 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_P15. 5' end sequence. |
Accession |
DK963230 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL244Contig1 |
Sequence |
GAAATCAAGGATTTTTTGCTTACGGCGCGGAGGAAGGATGCGCGCTCCATCAAAATCAAG CGCAGCAAGGATGTCGTGAAGTTCAAGGTTCGTTGCAAGAAGTACCTGTATACGCTTTGC GTGTTCGACTCTGAGAAGGCGGACAAGCTCAAGCAGTCCCTTCCACCAGGTTTGAGTGTC CAAGATGTTTAGGTTTGCTCGAGCAGCATGCATGTAAGGATGCATCTGGCAGCAGTTTTG TAGCATTTTGACAATCGTTGTTGTAATGCCGGATTGGCCACAAGCTGGATGACACAGAAC ATATGCTGATCTTATTCATTCCATTCGGCCATTCATGTTTTTGGTTTAAAGATCTCTAAT AGTGAAGAGCTAGTTTGCAGTTATATACAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22860 |
Definition |
sp|O22860|RL38_ARATH 60S ribosomal protein L38 OS=Arabidopsis thaliana |
Align length |
63 |
Score (bit) |
120.0 |
E-value |
3.0e-27 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NLH6 |
Definition |
tr|A9NLH6|A9NLH6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
63 |
Score (bit) |
122.0 |
E-value |
9.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963230|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0015_P15, 5' (388 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NLH6|A9NLH6_PICSI Putative uncharacterized protein OS=Picea... 122 9e-27 tr|A7QYS2|A7QYS2_VITVI Chromosome chr5 scaffold_253, whole genom... 122 1e-26 tr|A9TGW1|A9TGW1_PHYPA Predicted protein OS=Physcomitrella paten... 121 2e-26 tr|A9PDL5|A9PDL5_POPTR Putative uncharacterized protein OS=Popul... 120 3e-26 tr|A9P978|A9P978_POPTR Putative uncharacterized protein OS=Popul... 120 4e-26 tr|B4FHI7|B4FHI7_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 119 6e-26 tr|A9S3Z6|A9S3Z6_PHYPA Predicted protein OS=Physcomitrella paten... 119 1e-25 tr|A9SDA4|A9SDA4_PHYPA Predicted protein OS=Physcomitrella paten... 118 2e-25 tr|A9NLM2|A9NLM2_PICSI Putative uncharacterized protein OS=Picea... 118 2e-25 tr|B6SPK5|B6SPK5_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 117 3e-25 tr|B6SNL8|B6SNL8_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 117 3e-25 tr|A9PH37|A9PH37_POPTR Putative uncharacterized protein OS=Popul... 116 5e-25 tr|B6UE19|B6UE19_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 115 1e-24 tr|B6T9V8|B6T9V8_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 115 1e-24 tr|Q8GVY2|Q8GVY2_ORYSJ 60S ribosomal protein L38, putative, expr... 113 4e-24 tr|B8BKA7|B8BKA7_ORYSI Putative uncharacterized protein OS=Oryza... 113 4e-24 tr|B8B772|B8B772_ORYSI Putative uncharacterized protein OS=Oryza... 113 4e-24 tr|A3BKW3|A3BKW3_ORYSJ Putative uncharacterized protein OS=Oryza... 113 4e-24 tr|Q38JI0|Q38JI0_SOLTU Ribosomal protein L38-like OS=Solanum tub... 113 5e-24 tr|B8BKA6|B8BKA6_ORYSI Putative uncharacterized protein OS=Oryza... 112 7e-24 tr|Q75IN7|Q75IN7_ORYSJ Os05g0507200 protein OS=Oryza sativa subs... 110 3e-23 tr|A9TQF6|A9TQF6_PHYPA Predicted protein OS=Physcomitrella paten... 110 4e-23 tr|B6SPI9|B6SPI9_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 110 5e-23 tr|B8AZS4|B8AZS4_ORYSI Putative uncharacterized protein OS=Oryza... 109 8e-23 tr|B6SIV4|B6SIV4_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 109 8e-23 tr|A3B5N9|A3B5N9_ORYSJ Putative uncharacterized protein OS=Oryza... 109 8e-23 tr|Q6DER9|Q6DER9_XENTR MGC89823 protein OS=Xenopus tropicalis GN... 103 4e-21 tr|Q66KV2|Q66KV2_XENLA MGC85404 protein OS=Xenopus laevis GN=MGC... 103 4e-21 tr|Q8GUQ9|Q8GUQ9_CHLRE 60S ribosomal protein L38 (Ribosomal prot... 103 4e-21 tr|Q52KP0|Q52KP0_MOUSE Putative uncharacterized protein OS=Mus m... 102 7e-21
>tr|A9NLH6|A9NLH6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=3 SV=1 Length = 69
Score = 122 bits (306), Expect = 9e-27 Identities = 59/63 (93%), Positives = 62/63 (98%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS++IKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGL V Sbjct: 7 EIKDFLLTARRKDARSVRIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLQV 66
Query: 181 QDV 189 QD+ Sbjct: 67 QDL 69
>tr|A7QYS2|A7QYS2_VITVI Chromosome chr5 scaffold_253, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010306001 PE=3 SV=1 Length = 125
Score = 122 bits (305), Expect = 1e-26 Identities = 59/63 (93%), Positives = 62/63 (98%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRSKDVVKFKVRC KYLYTLCVFD+EKADKLKQSLPPGLSV Sbjct: 63 EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKADKLKQSLPPGLSV 122
Query: 181 QDV 189 QD+ Sbjct: 123 QDL 125
>tr|A9TGW1|A9TGW1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108135 PE=3 SV=1 Length = 69
Score = 121 bits (303), Expect = 2e-26 Identities = 58/63 (92%), Positives = 63/63 (100%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRSKDVVKFKVRCKKYLYTLCVFD+EKADKLKQSLPPGL+V Sbjct: 7 EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCKKYLYTLCVFDTEKADKLKQSLPPGLTV 66
Query: 181 QDV 189 Q++ Sbjct: 67 QEL 69
>tr|A9PDL5|A9PDL5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=3 SV=1 Length = 69
Score = 120 bits (301), Expect = 3e-26 Identities = 58/63 (92%), Positives = 61/63 (96%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRSKD VKFKVRC KYLYTLCVFD+EKADKLKQSLPPGLSV Sbjct: 7 EIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLSV 66
Query: 181 QDV 189 QD+ Sbjct: 67 QDL 69
>tr|A9P978|A9P978_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=3 SV=1 Length = 69
Score = 120 bits (300), Expect = 4e-26 Identities = 58/63 (92%), Positives = 61/63 (96%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRS+DVVKFKVRC KYLYTLCVFD EKADKLKQSLPPGLSV Sbjct: 7 EIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSV 66
Query: 181 QDV 189 QD+ Sbjct: 67 QDL 69
>tr|B4FHI7|B4FHI7_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=4 SV=1 Length = 69
Score = 119 bits (299), Expect = 6e-26 Identities = 58/63 (92%), Positives = 62/63 (98%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRSKDVVKFKVRC KYLYTLCVFD+EKA+KLKQSLPPGLSV Sbjct: 7 EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLPPGLSV 66
Query: 181 QDV 189 Q+V Sbjct: 67 QEV 69
>tr|A9S3Z6|A9S3Z6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_208463 PE=3 SV=1 Length = 69
Score = 119 bits (297), Expect = 1e-25 Identities = 57/63 (90%), Positives = 61/63 (96%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRSKDVVKFKVRC KYLYTLCVFDS+KADKLKQSLPPGL+V Sbjct: 7 EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSDKADKLKQSLPPGLTV 66
Query: 181 QDV 189 D+ Sbjct: 67 HDL 69
>tr|A9SDA4|A9SDA4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_211044 PE=3 SV=1 Length = 69
Score = 118 bits (295), Expect = 2e-25 Identities = 57/63 (90%), Positives = 61/63 (96%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRSKDVVKFKVRC KYLYTLCVFDS+KADKLKQSLPPGL+V Sbjct: 7 EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSDKADKLKQSLPPGLTV 66
Query: 181 QDV 189 D+ Sbjct: 67 LDL 69
>tr|A9NLM2|A9NLM2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=3 SV=1 Length = 69
Score = 118 bits (295), Expect = 2e-25 Identities = 57/63 (90%), Positives = 61/63 (96%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+ IKRSK+VVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGL+V Sbjct: 7 EIKDFLLTARRKDARSVNIKRSKNVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLTV 66
Query: 181 QDV 189 D+ Sbjct: 67 HDL 69
>tr|B6SPK5|B6SPK5_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=4 SV=1 Length = 69
Score = 117 bits (293), Expect = 3e-25 Identities = 56/63 (88%), Positives = 62/63 (98%) Frame = +1
Query: 1 EIKDFLLTARRKDARSIKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPPGLSV 180 EIKDFLLTARRKDARS+KIKRSKDVVKFKVRC KYLYTLCVFD+EKA+KLKQSLPPGL+V Sbjct: 7 EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLPPGLTV 66
Query: 181 QDV 189 ++V Sbjct: 67 EEV 69
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