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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963231
Clone id TST39A01NGRL0015_P16
Library
Length 658
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_P16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATCATCATCTCCTCTCCCCTCTCAGTCTCCTCTTTCGCCCCTTTGTGTCCCCCTCCTCCA
ATCCTAGCATTTAAGGGTCATTCTGATCGTCACCGCCTTGCAATATTAAGCGTCTTTGCA
GCCGAGTTCTAGATCCGCATCCGTCCTTCTGGAGCTCGCCATAAAAACTCCAGCTTTTGA
TTTGTAATCCTCCTTTTAGGGCCGTGGTTCATGCGCAACAGTAGACCGTCTTAGTGATGT
TGGTGCTCTGTGAATCTTTACCATCTTGCACACGCTGTGCTAAAAAGTTGCTGCACATAC
GCTGCAAGGATCCACTCTGAAGGCTCTCTAAATTATGGTGTAGAATTGCTCGGCAGTTAG
GGACTTGGAGGGCACAGAGATGGTGTGACTCGAAGGATCAAGGTGTAGGGAGAGCGAAAG
CATGGTCTAGGCTGCAAGGAAAGGCAGAATTCTTTAAGAGGCAAAATTCTGCTGCTAGTG
GTGATCTTCTGCGGAATGGAACTCGGTTCATCGGCAGATCAAAGCTCGGAATCTGAATGT
GCTCATCGACAAGAGGTACTGTTTCTAAGTCTGTTCCTTGCACATTCCCATCGTCCACCT
TCGCTCAGCATATATCCGGCTTACCCATGCCCTCCTGACCTCAATGCTTGCCCCCTGC
■■Homology search results ■■ -
sp_hit_id A4IYB1
Definition sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate transferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418)
Align length 100
Score (bit) 32.0
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963231|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_P16, 5'
         (658 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.0  
sp|Q5NH42|MIAA_FRATT tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.0  
sp|Q0BM87|MIAA_FRATO tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.0  
sp|A0Q6S4|MIAA_FRATN tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.0  
sp|Q2A3T6|MIAA_FRATH tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.0  
sp|A7NBS1|MIAA_FRATF tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.0  
sp|Q14IJ4|MIAA_FRAT1 tRNA delta(2)-isopentenylpyrophosphate tran...    32   3.0  
sp|Q4PBF2|NOP58_USTMA Nucleolar protein NOP58 OS=Ustilago maydis...    31   6.6  
sp|Q7TM95|TIGD3_MOUSE Tigger transposable element-derived protei...    30   8.6  
sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3 OS=Sc...    30   8.6  

>sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. tularensis
           (strain WY96-3418) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 391 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 212
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 211 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 110
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q5NH42|MIAA_FRATT tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. tularensis
           GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 391 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 212
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 211 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 110
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q0BM87|MIAA_FRATO tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. holarctica
           (strain OSU18) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 391 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 212
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 211 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 110
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|A0Q6S4|MIAA_FRATN tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. novicida
           (strain U112) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 391 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 212
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EELKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLRKNRMLTK 235

Query: 211 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 110
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q2A3T6|MIAA_FRATH tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. holarctica
           (strain LVS) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 391 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 212
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 211 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 110
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|A7NBS1|MIAA_FRATF tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. holarctica
           (strain FTA) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 391 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 212
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 211 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 110
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q14IJ4|MIAA_FRAT1 tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Francisella tularensis subsp. tularensis
           (strain FSC 198) GN=miaA PE=3 SV=1
          Length = 308

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
 Frame = -1

Query: 391 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 212
           E   LCAL VPN R+ILH N+ES               Q +  G   +  N+ K      
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 211 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 110
            TTA++     ++W +      Y E  K G  +  +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q4PBF2|NOP58_USTMA Nucleolar protein NOP58 OS=Ustilago maydis
           GN=NOP58 PE=3 SV=1
          Length = 582

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 21/87 (24%), Positives = 36/87 (41%)
 Frame = -1

Query: 334 NLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA*TTALKGGLQIKSWSFYGE 155
           ++ ++  G + +    FL   + +GK  +  N+       A   A K G+Q+   ++  E
Sbjct: 60  DISAINEGKMSKSLKKFLTDEIVEGKGKEKENLIVAESKLASNIAKKLGIQV---TYDSE 116

Query: 154 LQKDGCGSRTRLQRRLILQGGDDQNDP 74
           L     G R  L   L    GD+  DP
Sbjct: 117 LLDLYRGIRENLATLLSSSSGDESLDP 143


>sp|Q7TM95|TIGD3_MOUSE Tigger transposable element-derived protein 3
           OS=Mus musculus GN=Tigd3 PE=2 SV=1
          Length = 470

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 21/36 (58%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  PLSVSSFAPLCPPPPILAFKGHSDRHRLAILSVFAA 123
           PLS SS  P  P   ILAFK H  RHRL  LS  AA
Sbjct: 286 PLSASSTTPSLPGSVILAFKAHY-RHRL--LSKLAA 318


>sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3
           OS=Schizosaccharomyces pombe GN=pst3 PE=2 SV=1
          Length = 1154

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 485 SSAEWNSVHRQIKARNLNVLIDKRYC 562
           S  EW+ + RQI+ +N     D RYC
Sbjct: 646 SKREWSKIWRQIEKKNAQAAFDDRYC 671
tr_hit_id B8P7J3
Definition tr|B8P7J3|B8P7J3_9APHY Predicted protein OS=Postia placenta Mad-698-R
Align length 55
Score (bit) 37.4
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963231|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_P16, 5'
         (658 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8P7J3|B8P7J3_9APHY Predicted protein OS=Postia placenta Mad-...    37   0.82 
tr|B8P5Q1|B8P5Q1_9APHY Predicted protein OS=Postia placenta Mad-...    37   1.1  

>tr|B8P7J3|B8P7J3_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_101038 PE=4 SV=1
          Length = 704

 Score = 37.4 bits (85), Expect = 0.82
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = -1

Query: 559 VPLVDEHIQIPSFD--LPMNRVPFRRRSPLAAEFCLLKNSAFPCSLDHAFALPTP 401
           +P  ++H ++PS    LP   +  R  SP++A+F ++ +SA P  L  +F LP+P
Sbjct: 593 LPRFEQHARVPSTPPILPEIHIQQRAFSPVSADFPIVPSSARPSPLSSSFGLPSP 647


>tr|B8P5Q1|B8P5Q1_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_90925 PE=4 SV=1
          Length = 800

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 559 VPLVDEHIQIPSFD--LPMNRVPFRRRSPLAAEFCLLKNSAFPCSLDHAFALPTP 401
           +P  D+H ++PS    LP   +  R  SP++A++ +  +SA P  L  +F LP+P
Sbjct: 689 LPRFDQHARVPSTPPILPEIHIQQRAFSPVSADYPIAPSSARPSPLSSSFGLPSP 743