BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963280|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_B20, 5'
         (273 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5NZH8|GLND_AZOSE [Protein-PII] uridylyltransferase OS=Azoarc...    29   6.4  

>sp|Q5NZH8|GLND_AZOSE [Protein-PII] uridylyltransferase OS=Azoarcus
           sp. (strain EbN1) GN=glnD PE=3 SV=1
          Length = 862

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 89  NCRRS*GQLREMQISGWYGGALHSPQVWQHGSSRR 193
           NC+ S G LR++Q+ GW   A    + W+  + RR
Sbjct: 197 NCKESPGGLRDLQMLGWIARAAGLGRNWRDLARRR 231

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963280|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_B20, 5'
         (273 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2R6H2|Q2R6H2_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|Q9AD31|Q9AD31_STRCO Putative DNA-polymerase III, beta chain O...    33   5.5  
tr|Q9L6H4|Q9L6H4_STRCO Putative DNA-polymerase III, beta chain O...    33   5.5  
tr|A9W6F6|A9W6F6_METEP Carbohydrate-selective porin OprB OS=Meth...    33   9.1  
tr|B7KRA0|B7KRA0_METCH Carbohydrate-selective porin OprB OS=Meth...    33   9.1  
tr|A9V184|A9V184_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.1  

>tr|Q2R6H2|Q2R6H2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os11g20060 PE=4 SV=2
          Length = 165

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +1

Query: 64  AFFALTGKKLQEIVRAAEGDANFRLVWGGLALTSGMATWLLKKVLLQHYKELPHPAVTGV 243
           A   L  + + +I R AE      L    +A TSG+ T L+    L+H++ L +   TGV
Sbjct: 30  AIVMLPSQSVPKITRVAEDRIYLVLHCYDVAKTSGVLTLLVATYALRHHQHLLNLCNTGV 89

Query: 244 PVLGN 258
           P+LG+
Sbjct: 90  PLLGD 94


>tr|Q9AD31|Q9AD31_STRCO Putative DNA-polymerase III, beta chain
           OS=Streptomyces coelicolor GN=dnaN PE=4 SV=1
          Length = 372

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 76  LTGKKLQEIVRAAEGDANFRLVWGGLALTSGMATWLLKKVLLQHYKELPHP-AVTG 240
           ++G+ L +IV    GD +  L    L L +G A ++L  + L  Y  LP P  +TG
Sbjct: 69  VSGRLLSDIVCTVRGDVHLELRGPRLVLKAGSARFILPTLPLDEYPALPEPGTITG 124


>tr|Q9L6H4|Q9L6H4_STRCO Putative DNA-polymerase III, beta chain
           OS=Streptomyces coelicolor A3(2) PE=4 SV=1
          Length = 366

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 76  LTGKKLQEIVRAAEGDANFRLVWGGLALTSGMATWLLKKVLLQHYKELPHP-AVTG 240
           ++G+ L +IV    GD +  L    L L +G A ++L  + L  Y  LP P  +TG
Sbjct: 68  VSGRLLSDIVCTVRGDVHLELRGPRLVLKAGSARFILPTLPLDEYPALPEPGTITG 123


>tr|A9W6F6|A9W6F6_METEP Carbohydrate-selective porin OprB
           OS=Methylobacterium extorquens (strain PA1) GN=Mext_2771
           PE=4 SV=1
          Length = 534

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 125 QISGWYGGALHSP--QVWQHGSSRRFYSNITRSCLIQPL 235
           Q++GW G   H+   Q+  HG SRRF +N+T    I+ L
Sbjct: 169 QLAGWSGARFHTDFFQIHGHGLSRRFVNNLTTVSGIEAL 207


>tr|B7KRA0|B7KRA0_METCH Carbohydrate-selective porin OprB
           OS=Methylobacterium chloromethanicum CM4 GN=Mchl_2998
           PE=4 SV=1
          Length = 534

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 125 QISGWYGGALHSP--QVWQHGSSRRFYSNITRSCLIQPL 235
           Q++GW G   H+   Q+  HG SRRF +N+T    I+ L
Sbjct: 169 QLAGWSGARFHTDFFQIHGHGLSRRFINNLTTVSGIEAL 207


>tr|A9V184|A9V184_MONBE Predicted protein OS=Monosiga brevicollis
            GN=32709 PE=3 SV=1
          Length = 985

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = -2

Query: 254  PSTGTPVTAG*GNSL*CWSRTFLRSHVAIPEVSARPPHTSLKFASPSAALTISCNFLPVR 75
            PST +P TA  G++    S +   S   +P  +A+PP +SL     +AA   +    PVR
Sbjct: 920  PSTSSPTTAAPGDAAPHESTSGGGSSEPVPSSAAQPPPSSLSDTGHTAAAHEAALGSPVR 979

Query: 74   AKKA 63
             KK+
Sbjct: 980  RKKS 983