DK963316 |
Clone id |
TST39A01NGRL0016_D10 |
Library |
TST39 |
Length |
624 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_D10. 5' end sequence. |
Accession |
DK963316 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4015Contig1 |
Sequence |
GGATTCGAGACCAAGGTGCCCACTGCCCCCAATACGAAGCACGTAGTACCTGTTCACAAC CGAGTGTTGGGCCGTCGATTTAGGATTCATCGACCATCCTTAATGAGCTTGTTCGCATGC AGGTCGATCTTCAACCACGGCTACCTCAGGTATTAACCACTCTCCAGCTCTTATGGGACA TGTTGATGAGTGCTCTTCTGGTTCAACAACTCTGGAAAAAGACATTGGCTTTGTTGGAGT CCACCATGTTGGCATCCTTTGCAAGGACCTTGACAAGTCACTTAAATTCTACTGTGGCGT ACTTGGTATGAAAGTGTGTGACCTCCGACCAGATAAAACTCTTCCTTTTCGTGGGGCTTG GCTATGGGTTGGGGATCAGATGATTCATCTCATGGAACTGCCAAATCCGGATCCTGTTCA GGGACGACCTTTACATGGTGGAAGGGATCGACACATGTGCCTTCATGTCAAAAATCTGGA TGGCCTAAAATGCGCACTAAAAAATGCAGGTGCCTTTTTCACAGAAAGTGAGTCCTTAAA GCCACAGGTATTCGCCCGCGATCCTGATGGAAACTGCCTGGAGTTCCAACCTCTTGATGT GGGACCCTCTACAGGCAGCTAGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52096 |
Definition |
sp|P52096|YAER_ECOLI Uncharacterized protein yaeR OS=Escherichia coli (strain K12) |
Align length |
125 |
Score (bit) |
43.1 |
E-value |
0.001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963316|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0016_D10, 5' (624 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P52096|YAER_ECOLI Uncharacterized protein yaeR OS=Escherichia... 43 0.001 sp|Q502D1|GLOD5_DANRE Glyoxalase domain-containing protein 5 OS=... 42 0.002 sp|P45871|YWKD_BACSU Uncharacterized protein ywkD OS=Bacillus su... 42 0.003 sp|Q09751|LGUL_SCHPO Lactoylglutathione lyase OS=Schizosaccharom... 40 0.010 sp|Q9D8I3|GLOD5_MOUSE Glyoxalase domain-containing protein 5 OS=... 39 0.017 sp|Q96PE7|MCEE_HUMAN Methylmalonyl-CoA epimerase, mitochondrial ... 37 0.082 sp|Q9D1I5|MCEE_MOUSE Methylmalonyl-CoA epimerase, mitochondrial ... 37 0.11 sp|P46235|LGUL_VIBPA Probable lactoylglutathione lyase OS=Vibrio... 35 0.24 sp|Q4KLB0|GLOD5_XENLA Glyoxalase domain-containing protein 5 OS=... 35 0.31 sp|Q2KIZ3|MCEE_BOVIN Methylmalonyl-CoA epimerase, mitochondrial ... 35 0.41 sp|A6NK44|GLOD5_HUMAN Glyoxalase domain-containing protein 5 OS=... 35 0.41 sp|P0C5H0|GLOD5_CANFA Glyoxalase domain-containing protein 5 OS=... 34 0.53 sp|O34689|MHQA_BACSU Putative ring-cleaving dioxygenase mhqA OS=... 33 1.2 sp|Q55595|LGUL_SYNY3 Probable lactoylglutathione lyase OS=Synech... 33 1.2 sp|A4IS40|FOSB_GEOTN Metallothiol transferase fosB OS=Geobacillu... 33 1.2 sp|Q83D67|AROC_COXBU Chorismate synthase OS=Coxiella burnetii GN... 33 1.2 sp|A1A4L4|U526_BOVIN UPF0526 protein OS=Bos taurus PE=2 SV=1 33 1.6 sp|Q9KT93|LGUL_VIBCH Probable lactoylglutathione lyase OS=Vibrio... 32 2.0 sp|P39586|YWBC_BACSU Uncharacterized protein ywbC OS=Bacillus su... 32 2.6 sp|P44638|LGUL_HAEIN Lactoylglutathione lyase OS=Haemophilus inf... 32 2.6 sp|P16635|LGUL_PSEPU Lactoylglutathione lyase OS=Pseudomonas put... 32 3.4 sp|Q57130|Y1471_HAEIN Probable ABC transporter permease protein ... 31 4.5 sp|P0A1Q2|LGUL_SALTY Lactoylglutathione lyase OS=Salmonella typh... 31 4.5 sp|P0A1Q3|LGUL_SALTI Lactoylglutathione lyase OS=Salmonella typh... 31 4.5 sp|Q28CR0|GLOD5_XENTR Glyoxalase domain-containing protein 5 OS=... 31 5.9 sp|Q8ZM36|VIR17_SALTY Virulence protein STM3117 OS=Salmonella ty... 30 7.7 sp|P0A0T3|LGUL_NEIMB Lactoylglutathione lyase OS=Neisseria menin... 30 7.7 sp|P0A0T2|LGUL_NEIMA Lactoylglutathione lyase OS=Neisseria menin... 30 7.7 sp|P08695|BPHC_PSEPS Biphenyl-2,3-diol 1,2-dioxygenase OS=Pseudo... 30 7.7
>sp|P52096|YAER_ECOLI Uncharacterized protein yaeR OS=Escherichia coli (strain K12) GN=yaeR PE=4 SV=1 Length = 129
Score = 43.1 bits (100), Expect = 0.001 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Frame = +2
Query: 224 IGFVGVHHVGILCKDLDKSLKFYCGVLGMKV-CDLRPDKTLPFRGAWLWVGDQMIHLMEL 400 +G VHH+ I+ D S FYC +LG + ++ + ++G G +I L Sbjct: 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSF 61
Query: 401 PNPDPVQGRPLHGGRDRHMCLHVKNLDGLKCALKN----AGAFFTESESLKPQVFARDPD 568 P P RP G RH+ V ++D L++ + + K F DPD Sbjct: 62 PFPPERPSRPEACGL-RHLAFSVDDIDAAVAHLESHNVKCETIRVDPYTQKRFTFFNDPD 120
Query: 569 GNCLE 583 G LE Sbjct: 121 GLPLE 125
>sp|Q502D1|GLOD5_DANRE Glyoxalase domain-containing protein 5 OS=Danio rerio GN=glod5 PE=2 SV=1 Length = 163
Score = 42.4 bits (98), Expect = 0.002 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 13/172 (7%) Frame = +2
Query: 107 ACSHAGRSSTTATSGI---NHSPALMGHVDECSSGSTTLEKDIGFVGVHHVGILCKDLDK 277 +CS +S + S + + P L+ H+D H+ + +DL+K Sbjct: 14 SCSSNSKSVLSGLSSVRFRSSCPVLISHLD-------------------HLVLTVRDLNK 54
Query: 278 SLKFYCGVLGMKVCDLRPD-KTLPFRGAWLWVGDQMIHLMELPNP-DPVQGRPLHGGRDR 451 + KFY VLGM+V + D K L F G+Q I+L ++ +P P G D Sbjct: 55 TTKFYSEVLGMEVVTFKGDRKALSF-------GEQKINLHQVGKEFEPKAQTPTPGSAD- 106
Query: 452 HMCLHVKN-LDGLKCALKNAGAFFTE-----SESLKP--QVFARDPDGNCLE 583 +CL K L + LK G E + ++ P ++ RDPD N +E Sbjct: 107 -LCLITKTPLKAVADHLKACGVTIEEGPVDRTGAVGPISSLYFRDPDDNLIE 157
>sp|P45871|YWKD_BACSU Uncharacterized protein ywkD OS=Bacillus subtilis GN=ywkD PE=4 SV=1 Length = 128
Score = 42.0 bits (97), Expect = 0.003 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 5/120 (4%) Frame = +2
Query: 239 VHHVGILCKDLDKSLKFYCGVLGMKVC-DLRPDKTLPFRGAWLWVGDQMIHLMELPNPDP 415 +HH+ I+C D +KS FY LG +V + ++ ++ G +I L P+P Sbjct: 6 IHHIAIICSDYEKSKAFYVHKLGFQVIQETYREERGSYKLDLSLNGSYVIELFSFPDPPE 65
Query: 416 VQGRPLHGGRDRHMCLHVKNLDGLKCALKNAG----AFFTESESLKPQVFARDPDGNCLE 583 Q RP G RH+ V +LD L G T+ + K F DPD LE Sbjct: 66 RQTRPEAAGL-RHLAFTVGSLDKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQLPLE 124
>sp|Q09751|LGUL_SCHPO Lactoylglutathione lyase OS=Schizosaccharomyces pombe GN=glo1 PE=1 SV=1 Length = 302
Score = 40.0 bits (92), Expect = 0.010 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 23/144 (15%) Frame = +2
Query: 221 DIGFVGVHHVGILCKDLDKSLKFYCGVLGMKVCDLRPDKTLPFRGAWLWVG--DQMIHLM 394 D+ ++H I KDLDKSLKFY V GMK+ D + F ++L + H + Sbjct: 6 DMSTYKLNHTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEENEFSLSFLAFDGPGALNHGV 65
Query: 395 ELPNPDPVQGRPLHGGRDR------------------HMCLHVKNLDGLKCALKNAGAFF 520 E + + + G ++ H+C V N++ L++ G F Sbjct: 66 ERSKREGILELTYNFGTEKKEGPVYINGNTEPKRGFGHICFTVDNIESACAYLESKGVSF 125
Query: 521 TESES---LKPQVFARDPDGNCLE 583 + S +K FA DPD +E Sbjct: 126 KKKLSDGKMKHIAFALDPDNYWIE 149
>sp|Q9D8I3|GLOD5_MOUSE Glyoxalase domain-containing protein 5 OS=Mus musculus GN=Glod5 PE=2 SV=1 Length = 148
Score = 39.3 bits (90), Expect = 0.017 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Frame = +2
Query: 245 HVGILCKDLDKSLKFYCGVLGMKVCDLRPDKTLPFRGAWLWVGDQMIHLMELPNP-DPVQ 421 H+ + K+++ + FY +LGM+V + ++ L GDQ +L E+ DP Sbjct: 28 HIVMTVKNIEDTTMFYSKILGMEVTTFKGNRKA------LCFGDQKFNLHEVGKEFDPKA 81
Query: 422 GRPLHGGRDRHMCL--------HVKNLDGLKCALKNAGAFFTESESLKPQVFARDPDGNC 577 P+ G D +CL ++ L ++ F T ++ ++ RDPD N Sbjct: 82 AHPVPGSLD--VCLITEAPLEEVIERLKAFDVPIEEGPVFRTGAKGPILSIYFRDPDRNL 139
Query: 578 LE 583 LE Sbjct: 140 LE 141
>sp|Q96PE7|MCEE_HUMAN Methylmalonyl-CoA epimerase, mitochondrial OS=Homo sapiens GN=MCEE PE=2 SV=1 Length = 176
Score = 37.0 bits (84), Expect = 0.082 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 10/113 (8%) Frame = +2
Query: 194 SSGSTTLEKDIGFVG----VHHVGILCKDLDKSLKFYCGVLGMKVCDLRPDKTLPFRG-- 355 SS S L++ G V ++HV I DL+K+ FY +LG +V + P LP G Sbjct: 29 SSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEKAAAFYKNILGAQVSEAVP---LPEHGVS 85
Query: 356 -AWLWVGDQMIHLME-LPNPDPVQG--RPLHGGRDRHMCLHVKNLDGLKCALK 502 ++ +G+ + L+ L P+ G + G H+C+ V N++ LK Sbjct: 86 VVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLK 138
>sp|Q9D1I5|MCEE_MOUSE Methylmalonyl-CoA epimerase, mitochondrial OS=Mus musculus GN=Mcee PE=2 SV=1 Length = 178
Score = 36.6 bits (83), Expect = 0.11 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Frame = +2
Query: 239 VHHVGILCKDLDKSLKFYCGVLGMKVCDLRPDKTLPFRG---AWLWVGDQMIHLME-LPN 406 ++HV + DL+K+ FY VLG +V ++ P LP G ++ +G+ + L+ L + Sbjct: 50 LNHVAVAVPDLEKASSFYRDVLGAQVSEVVP---LPEHGVSVVFVNLGNTKMELLHPLGS 106
Query: 407 PDPVQG--RPLHGGRDRHMCLHVKNLDGLKCALK 502 P+ G + G H+C+ V N+ LK Sbjct: 107 DSPITGFLQKNKAGGMHHVCIEVDNISAAVMDLK 140
>sp|P46235|LGUL_VIBPA Probable lactoylglutathione lyase OS=Vibrio parahaemolyticus GN=gloA PE=3 SV=2 Length = 138
Score = 35.4 bits (80), Expect = 0.24 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Frame = +2
Query: 245 HVGILCKDLDKSLKFYCGVLGMKVCDLRPDKTLPFRGAWLWVGDQ-MIHLMELPNPDPVQ 421 H + DLDKS+KFY V+GM++ +K + A++ GD+ ++EL Sbjct: 8 HTMLRVGDLDKSIKFYTEVMGMQLLRTNENKEYEYTLAFVGYGDESQGAVIELTYNWGKT 67
Query: 422 GRPLHGGRDRHMCLHVKNLDGLKCALKNAGAFFT-ESESLKPQ----VFARDPDGNCLE 583 L G H+ + V ++ A+K AG T E+ +K F +DPDG +E Sbjct: 68 EYDL-GTAFGHIAIGVDDIYATCDAIKAAGGNVTREAGPVKGGTTHIAFVKDPDGYMIE 125
>sp|Q4KLB0|GLOD5_XENLA Glyoxalase domain-containing protein 5 OS=Xenopus laevis GN=glod5 PE=2 SV=2 Length = 160
Score = 35.0 bits (79), Expect = 0.31 Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 10/145 (6%) Frame = +2
Query: 179 HVDECSSGSTTLEKDIGFVGVHHVGILCKDLDKSLKFYCGVLGMKVCDLRPD-KTLPFRG 355 H+ C S S + H+ + ++LDK++KFY VLGM+ + K L F Sbjct: 17 HLSRCLSDS---RPPFRIQRLDHLVLTVRNLDKTIKFYTKVLGMEATTFKGGRKALSF-- 71
Query: 356 AWLWVGDQMIHLMELPNP-DPVQGRPLHGGRDRHMCLHVKN-LDGLKCALKNAGAFFTES 529 G Q I+L E +P P G D +CL + L + LK G E Sbjct: 72 -----GIQKINLHETGKEFEPKASLPTPGSAD--LCLITETPLTTVVQHLKVCGVPIEEG 124
Query: 530 ESLK-------PQVFARDPDGNCLE 583 + V+ RDPD N +E Sbjct: 125 PVSRTGAVGEITSVYLRDPDHNLIE 149
>sp|Q2KIZ3|MCEE_BOVIN Methylmalonyl-CoA epimerase, mitochondrial OS=Bos taurus GN=MCEE PE=2 SV=1 Length = 175
Score = 34.7 bits (78), Expect = 0.41 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Frame = +2
Query: 239 VHHVGILCKDLDKSLKFYCGVLGMKVCDLRPDKTLPFRG---AWLWVGDQMIHLME-LPN 406 ++HV + DL+K+ FY VLG +V + P LP G ++ +G+ + L+ L + Sbjct: 47 LNHVAVAVPDLEKARAFYKNVLGAEVGEPVP---LPEHGVSVVFVNLGNTKMELLHPLGS 103
Query: 407 PDPVQG--RPLHGGRDRHMCLHVKNLDGLKCALKNAGAFFTESESL-----KPQVFARDP 565 P+ G + G H+C+ V N++ LK E+ KP +F Sbjct: 104 DSPIAGFLKKNKAGGMHHVCIEVDNINVAVMDLKEKKIRILSEEAKIGAHGKPVIFLHPS 163
Query: 566 D 568 D Sbjct: 164 D 164
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK13 |
Definition |
tr|A9NK13|A9NK13_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
139 |
Score (bit) |
166.0 |
E-value |
8.0e-40 |
Report |
|