DK963328 |
Clone id |
TST39A01NGRL0016_D22 |
Library |
TST39 |
Length |
603 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_D22. 5' end sequence. |
Accession |
DK963328 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2041Contig1 |
Sequence |
TAGAGGAAGAGTTTCTTGGAGCTGTAGCTATGGCAGCTGCTCTTGCAGGAGGCTTGTCCG CTGTGGCCAAGCCAAGCTTTAACAACGACAAGGTCTCTTCCCACAGCGGCTTGCGTAGCC TTTCTTCCTCTGCTTCTTATGCTTCCCTTTCCCAAAGAGACTTCTTTTCAACCAATTGCT CCAGTTTGCGAAGGACGCCCATTGTCCAGACCAGGTCTATGGCGAAGGAGCTGTATTTCA ACAAGGATGGATCAACCATGAAGAAACTGCAGGCAGGTGTAAACAAACTGTCAGATTTAG TAGGTGTAACTTTAGGTCCCAAAGGTAGGAACGTTGTGCTGGAGAGCAAGTACGGTGCTC CCAAAATTGTCAACGATGGCGTCACTGTTGCCAAAGAGGTTGAGCTCGAAGATCCAGTTG AAAACATTGGCGCGAAGCTTGTTAGACAAGCTGCTGCTAAAACAAACGATCTGGCTGGTG ATGGAACAACAACTTCGCTTGTTCTTGCACAAGGTCTCATTGCAGAGGGTGTAAAGGTGG TTGCTGCTGGAGCTAACCCAATCCAGATAACTAGGGGTATTGACAAGACTGTGAAGTTTC TAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P08927 |
Definition |
sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum |
Align length |
138 |
Score (bit) |
228.0 |
E-value |
2.0e-59 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NV22 |
Definition |
tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
137 |
Score (bit) |
241.0 |
E-value |
3.0e-62 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963328|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0016_D22, 5' (603 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea... 241 3e-62 tr|A7P0B1|A7P0B1_VITVI Chromosome chr6 scaffold_3, whole genome ... 233 6e-60 tr|Q9LWT6|Q9LWT6_ORYSJ Os06g0114000 protein OS=Oryza sativa subs... 227 4e-58 tr|A7P765|A7P765_VITVI Chromosome chr9 scaffold_7, whole genome ... 227 4e-58 tr|A3B7Q6|A3B7Q6_ORYSJ Putative uncharacterized protein OS=Oryza... 227 4e-58 tr|A7Y7L7|A7Y7L7_PRUDU Putative GloEL protein:chaperonin, 60kDa ... 226 8e-58 tr|P93570|P93570_SOLTU Chaperonin-60 beta subunit OS=Solanum tub... 226 1e-57 tr|Q0W9E2|Q0W9E2_SOLCO Beta chaperonin 60 OS=Solanum commersonii... 225 2e-57 tr|A9RLL2|A9RLL2_PHYPA Predicted protein OS=Physcomitrella paten... 225 2e-57 tr|A9RKJ5|A9RKJ5_PHYPA Predicted protein OS=Physcomitrella paten... 225 2e-57 tr|A9TNZ2|A9TNZ2_PHYPA Predicted protein OS=Physcomitrella paten... 224 2e-57 tr|Q6ZFJ9|Q6ZFJ9_ORYSJ Os02g0102900 protein OS=Oryza sativa subs... 224 3e-57 tr|B8AGV6|B8AGV6_ORYSI Putative uncharacterized protein OS=Oryza... 224 3e-57 tr|A3A263|A3A263_ORYSJ Putative uncharacterized protein OS=Oryza... 224 3e-57 tr|Q9FHA9|Q9FHA9_ARATH RuBisCO subunit binding-protein beta subu... 224 4e-57 tr|Q0WRG9|Q0WRG9_ARATH RuBisCO subunit binding-protein beta subu... 224 4e-57 tr|B6THN2|B6THN2_MAIZE RuBisCO large subunit-binding protein sub... 223 9e-57 tr|B6SH83|B6SH83_MAIZE RuBisCO large subunit-binding protein sub... 223 9e-57 tr|A9PF58|A9PF58_POPTR Putative uncharacterized protein OS=Popul... 223 9e-57 tr|Q9LJE4|Q9LJE4_ARATH GloEL protein; chaperonin, 60 kDa OS=Arab... 221 3e-56 tr|P93571|P93571_SOLTU Chaperonin-60 beta subunit (Fragment) OS=... 204 2e-51 tr|A7PNB9|A7PNB9_VITVI Chromosome chr1 scaffold_22, whole genome... 201 3e-50 tr|Q9C667|Q9C667_ARATH Chaperonin, putative OS=Arabidopsis thali... 196 9e-49 tr|Q56XN6|Q56XN6_ARATH Chaperonin OS=Arabidopsis thaliana GN=At1... 196 9e-49 tr|A8ITH8|A8ITH8_CHLRE Chaperonin 60B2 OS=Chlamydomonas reinhard... 196 9e-49 tr|A4S076|A4S076_OSTLU Chaperonin 60 beta chain, chloroplast OS=... 196 9e-49 tr|Q015D7|Q015D7_OSTTA RUBISCO SUBUNIT BINDING-PROTEIN BETA-2 SU... 196 1e-48 tr|A8JE91|A8JE91_CHLRE Chaperonin 60B1 OS=Chlamydomonas reinhard... 191 4e-47 tr|B8BJN0|B8BJN0_ORYSI Putative uncharacterized protein OS=Oryza... 186 1e-45 tr|B8HWB3|B8HWB3_9CHRO Chaperonin GroEL OS=Cyanothece sp. PCC 74... 167 6e-40
>tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 617
Score = 241 bits (614), Expect = 3e-62 Identities = 124/137 (90%), Positives = 130/137 (94%) Frame = +3
Query: 192 RTPIVQTRSMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPKIV 371 R +V TR+MAKELYFNKDGS KKLQAGVNKL+DLVGVTLGPKGRNVVLESKYG+PKIV Sbjct: 63 REQVVNTRAMAKELYFNKDGSATKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIV 122
Query: 372 NDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVAAG 551 NDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTS+VLAQGLI EGVKVVAAG Sbjct: 123 NDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIGEGVKVVAAG 182
Query: 552 ANPIQITRGIDKTVKFL 602 ANPIQITRGI+KTVK L Sbjct: 183 ANPIQITRGIEKTVKAL 199
>tr|A7P0B1|A7P0B1_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024837001 PE=3 SV=1 Length = 606
Score = 233 bits (594), Expect = 6e-60 Identities = 120/139 (86%), Positives = 129/139 (92%) Frame = +3
Query: 186 LRRTPIVQTRSMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPK 365 LRRT + +MAK+LYFNKDGS +KKLQ GVNKL+DLVGVTLGPKGRNVVLESKYG+PK Sbjct: 52 LRRTRSPRINAMAKDLYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPK 111
Query: 366 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVA 545 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTS+VLAQGLIAEGVKVVA Sbjct: 112 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVA 171
Query: 546 AGANPIQITRGIDKTVKFL 602 AGANP+ ITRGI+KT K L Sbjct: 172 AGANPVLITRGIEKTTKSL 190
>tr|Q9LWT6|Q9LWT6_ORYSJ Os06g0114000 protein OS=Oryza sativa subsp. japonica GN=P0541H01.20 PE=2 SV=1 Length = 601
Score = 227 bits (579), Expect = 4e-58 Identities = 115/127 (90%), Positives = 123/127 (96%) Frame = +3
Query: 222 AKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 401 AKELYFNKDGS +KKLQ GVNKL+DLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EV Sbjct: 57 AKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREV 116
Query: 402 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVAAGANPIQITRGI 581 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTS+VLAQGLIAEGVKVVAAGANP+QITRGI Sbjct: 117 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGI 176
Query: 582 DKTVKFL 602 +KT K L Sbjct: 177 EKTAKAL 183
>tr|A7P765|A7P765_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034341001 PE=3 SV=1 Length = 634
Score = 227 bits (579), Expect = 4e-58 Identities = 114/132 (86%), Positives = 125/132 (94%) Frame = +3
Query: 207 QTRSMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPKIVNDGVT 386 + R+MAKELYFNKDGS +KKLQ GVNKL+DLVGVTLGPKGRNVVLESKYG+PKIVNDGVT Sbjct: 60 KVRAMAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVT 119
Query: 387 VAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVAAGANPIQ 566 VA+EVELEDPVENIGA+LVRQAA+KTNDLAGDGTTTS+VLAQGLI EGVKVVAAGANP+Q Sbjct: 120 VAREVELEDPVENIGARLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVQ 179
Query: 567 ITRGIDKTVKFL 602 ITRGI+ T K L Sbjct: 180 ITRGIENTTKAL 191
>tr|A3B7Q6|A3B7Q6_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_019078 PE=3 SV=1 Length = 609
Score = 227 bits (579), Expect = 4e-58 Identities = 115/127 (90%), Positives = 123/127 (96%) Frame = +3
Query: 222 AKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 401 AKELYFNKDGS +KKLQ GVNKL+DLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EV Sbjct: 57 AKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREV 116
Query: 402 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVAAGANPIQITRGI 581 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTS+VLAQGLIAEGVKVVAAGANP+QITRGI Sbjct: 117 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGI 176
Query: 582 DKTVKFL 602 +KT K L Sbjct: 177 EKTAKAL 183
>tr|A7Y7L7|A7Y7L7_PRUDU Putative GloEL protein:chaperonin, 60kDa (Fragment) OS=Prunus dulcis PE=2 SV=1 Length = 166
Score = 226 bits (576), Expect = 8e-58 Identities = 118/139 (84%), Positives = 128/139 (92%) Frame = +3
Query: 186 LRRTPIVQTRSMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPK 365 LRRT + +MAKEL+FNKDGS +KKLQ GVNKL+DLVGVTLGPKGRNVVLESKYG+PK Sbjct: 27 LRRTRSPRICAMAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPK 86
Query: 366 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVA 545 IVNDGVTVAKEVELEDPVENIGAKLVR+AAAKTNDLAGDGTTTS+VLAQGLIAEGVKVVA Sbjct: 87 IVNDGVTVAKEVELEDPVENIGAKLVRRAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVA 146
Query: 546 AGANPIQITRGIDKTVKFL 602 AGA P+ ITRGI+KT K L Sbjct: 147 AGAIPVLITRGIEKTAKAL 165
>tr|P93570|P93570_SOLTU Chaperonin-60 beta subunit OS=Solanum tuberosum PE=2 SV=1 Length = 599
Score = 226 bits (575), Expect = 1e-57 Identities = 120/150 (80%), Positives = 132/150 (88%), Gaps = 5/150 (3%) Frame = +3
Query: 168 STNCSSLRRTPIVQTR-----SMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRN 332 ST+ S R + ++R + AKEL+FNKDGS +KKLQ GVNKL+DLVGVTLGPKGRN Sbjct: 32 STSFGSKRNVALRKSRRPTILAAAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRN 91
Query: 333 VVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQ 512 VVLESKYGAPKIVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTS+VLAQ Sbjct: 92 VVLESKYGAPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQ 151
Query: 513 GLIAEGVKVVAAGANPIQITRGIDKTVKFL 602 GLIAEGVKVVAAGANP+ ITRGI+KT K L Sbjct: 152 GLIAEGVKVVAAGANPVLITRGIEKTAKAL 181
>tr|Q0W9E2|Q0W9E2_SOLCO Beta chaperonin 60 OS=Solanum commersonii GN=cbn60 PE=2 SV=1 Length = 600
Score = 225 bits (573), Expect = 2e-57 Identities = 118/147 (80%), Positives = 131/147 (89%) Frame = +3
Query: 162 FFSTNCSSLRRTPIVQTRSMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVL 341 F S +LR++ + + AKEL+FNKDGS +KKLQ GVNKL+DLVGVTLGPKGRNVVL Sbjct: 35 FGSKRNVALRKSRRLTILAAAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVL 94
Query: 342 ESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLI 521 ESKYGAPKIVNDGVTVA+EVELEDPV+NIGAKLVRQAAAKTNDLAGDGTTTS+VLAQGLI Sbjct: 95 ESKYGAPKIVNDGVTVAREVELEDPVKNIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLI 154
Query: 522 AEGVKVVAAGANPIQITRGIDKTVKFL 602 AEGVKVVAAGANP+ ITRGI+KT K L Sbjct: 155 AEGVKVVAAGANPVLITRGIEKTAKAL 181
>tr|A9RLL2|A9RLL2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_176210 PE=3 SV=1 Length = 604
Score = 225 bits (573), Expect = 2e-57 Identities = 114/128 (89%), Positives = 124/128 (96%) Frame = +3
Query: 210 TRSMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 389 T AKEL+FNKDGS +KK+QAGV+KL+DLVGVTLGPKGRNVVLESKYG+PKIVNDGVTV Sbjct: 56 TVKAAKELHFNKDGSAIKKMQAGVDKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV 115
Query: 390 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVAAGANPIQI 569 AKEVELEDPVENIGAKLVRQA+AKTNDLAGDGTTTS+VLAQGLIAEGVKVVAAGANP+QI Sbjct: 116 AKEVELEDPVENIGAKLVRQASAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQI 175
Query: 570 TRGIDKTV 593 TRGID+TV Sbjct: 176 TRGIDRTV 183
>tr|A9RKJ5|A9RKJ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115702 PE=3 SV=1 Length = 548
Score = 225 bits (573), Expect = 2e-57 Identities = 115/131 (87%), Positives = 125/131 (95%) Frame = +3
Query: 210 TRSMAKELYFNKDGSTMKKLQAGVNKLSDLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 389 T AK+L+FNKDGS +KK+QAGV+KL+DLVGVTLGPKGRNVVLESKYG+PKIVNDGVTV Sbjct: 2 TVKAAKQLHFNKDGSAIKKMQAGVDKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV 61
Query: 390 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSLVLAQGLIAEGVKVVAAGANPIQI 569 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTS+VLAQGLIAEGVKVVAAGANP+QI Sbjct: 62 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQI 121
Query: 570 TRGIDKTVKFL 602 TRGI+KTV L Sbjct: 122 TRGIEKTVAAL 132
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