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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963360
Clone id TST39A01NGRL0016_F08
Library
Length 636
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_F08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCGACGTTGATATCACCTCCGACCACAGCAGTATTCTCAACCTCCTCAATCACCTTGTAT
CATTCTAGAGACTTGGATATTGATCATCGCTTCCGTAACAAGCGATGGCGAGATTGGCCT
ACTTCCTCTCTTCAACAGCAAGGCCTTGTAATTCCCATCCTCTCAGTACCGATGGCGAGA
GCGGCCTATTTCCTCTCTTCCACAGCAAGGCCTTGATCCGACGTTGATATCACCTCCGAC
CACAGCCAGTATTTTCAACCTCCTCAATCACCTTGTATCATTCTAGAGACTTGGATATCG
ATCATCGCTTCGTAACAAGCGATGGCGAGAGCGGCCTACTTCCTCTCTTCAACAGCAAGG
CAAGAGAAGCTGTCGAAATGAAACCCTTTCTTTACAGGATCTTTTGCACTTATGCTTCTT
CTGCAAGTCCTTTCAGAAGTACTCACCATGCGGCTTGTTGGAGAGCACAACTTCAAATTA
TTCCTGCCCAGAAACCTCTCTTGTGAGGACGATGATTATGGTCATGTTCATACTGTTTCA
TGGATGCAGATTTGCGAATCACGGCATACTCAGCAGAGGGATGTATGCGTGTCTTGCACT
ATTTGCAGAAGAGAGTGACGCCAGCCTGTACATGAC
■■Homology search results ■■ -
sp_hit_id Q5QQ49
Definition sp|Q5QQ49|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus
Align length 55
Score (bit) 31.6
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963360|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_F08, 5'
         (636 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5QQ49|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT...    32   3.6  
sp|Q89914|MOVP_SYNV Putative movement protein Sc4 OS=Sonchus yel...    32   3.6  
sp|Q8ZWC4|Y1861_PYRAE Putative ankyrin repeat protein PAE1861 OS...    31   4.7  
sp|Q99PV3|MKLN1_RAT Muskelin OS=Rattus norvegicus GN=Mkln1 PE=1 ...    31   6.1  
sp|Q5RB35|MKLN1_PONAB Muskelin OS=Pongo abelii GN=MKLN1 PE=2 SV=1      31   6.1  
sp|O89050|MKLN1_MOUSE Muskelin OS=Mus musculus GN=Mkln1 PE=2 SV=1      31   6.1  
sp|Q9UL63|MKLN1_HUMAN Muskelin OS=Homo sapiens GN=MKLN1 PE=1 SV=2      31   6.1  

>sp|Q5QQ49|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2
           PE=2 SV=1
          Length = 867

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = +2

Query: 278 SF*RLGYRSSLRNKRWRERPTSSLQQQGKRSCRNETLSLQDLLHLCFFCKSFQKY 442
           SF RLG R          R  +SL+  G+ SCR E   L   +HL F+   FQ Y
Sbjct: 559 SFSRLGLR----------RAEASLRAPGESSCRFEPRGLPSSVHLYFYDDHFQGY 603


>sp|Q89914|MOVP_SYNV Putative movement protein Sc4 OS=Sonchus yellow
           net virus GN=sc4 PE=1 SV=1
          Length = 324

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +3

Query: 189 FPLFHSKALIRR*YHLRPQPVFSTSSITLYHSRDLDIDHRFVTSDGESGLLPLFNSKARE 368
           FP +   A+IRR   +RP  VFST+  +++   D+ I H    S  ES ++P+ ++ ++E
Sbjct: 195 FPYYVPFAMIRRARGIRPLDVFSTNQYSMF-LEDV-IKHVGTDSIKESDIVPIMSTMSQE 252

Query: 369 AVEM 380
            + M
Sbjct: 253 DMMM 256


>sp|Q8ZWC4|Y1861_PYRAE Putative ankyrin repeat protein PAE1861
           OS=Pyrobaculum aerophilum GN=PAE1861 PE=4 SV=1
          Length = 256

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 258 LKILAVVGGDINVGSRPCCGREEIGRSRHRY*EDGNYKALLLKRGSRPI 112
           +K+L   G D+N         + +GR+   Y EDG     LLKRG+RP+
Sbjct: 202 IKLLLRYGADLNAV-------DNMGRTPLHYAEDGLAAEALLKRGARPV 243


>sp|Q99PV3|MKLN1_RAT Muskelin OS=Rattus norvegicus GN=Mkln1 PE=1
           SV=1
          Length = 735

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 147 CNSHPLSTDGESGLFPLFHSKALIRR*YHLRPQPVFSTSSITLYHSRDLDIDHRFVTSDG 326
           CN+ P       G   LFHSK   R  Y    Q   S + +  + S D+D DH  + SDG
Sbjct: 446 CNAGPEDIQSRIGHCMLFHSKN--RCLYVFGGQR--SKTYLNDFFSYDVDSDHVDIISDG 501

Query: 327 ---ESGLLPLFNSKAREAVE 377
              +SG++P+     R  ++
Sbjct: 502 TKKDSGMVPMTGFTQRATID 521


>sp|Q5RB35|MKLN1_PONAB Muskelin OS=Pongo abelii GN=MKLN1 PE=2 SV=1
          Length = 735

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 147 CNSHPLSTDGESGLFPLFHSKALIRR*YHLRPQPVFSTSSITLYHSRDLDIDHRFVTSDG 326
           CN+ P       G   LFHSK   R  Y    Q   S + +  + S D+D DH  + SDG
Sbjct: 446 CNAGPEDIQSRIGHCMLFHSKN--RCLYVFGGQR--SKTYLNDFFSYDVDSDHVDIISDG 501

Query: 327 ---ESGLLPLFNSKAREAVE 377
              +SG++P+     R  ++
Sbjct: 502 TKKDSGMVPMTGFTQRATID 521


>sp|O89050|MKLN1_MOUSE Muskelin OS=Mus musculus GN=Mkln1 PE=2 SV=1
          Length = 735

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 147 CNSHPLSTDGESGLFPLFHSKALIRR*YHLRPQPVFSTSSITLYHSRDLDIDHRFVTSDG 326
           CN+ P       G   LFHSK   R  Y    Q   S + +  + S D+D DH  + SDG
Sbjct: 446 CNAGPEDIQSRIGHCMLFHSKN--RCLYVFGGQR--SKTYLNDFFSYDVDSDHVDIISDG 501

Query: 327 ---ESGLLPLFNSKAREAVE 377
              +SG++P+     R  ++
Sbjct: 502 TKKDSGMVPMTGFTQRATID 521


>sp|Q9UL63|MKLN1_HUMAN Muskelin OS=Homo sapiens GN=MKLN1 PE=1 SV=2
          Length = 735

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 147 CNSHPLSTDGESGLFPLFHSKALIRR*YHLRPQPVFSTSSITLYHSRDLDIDHRFVTSDG 326
           CN+ P       G   LFHSK   R  Y    Q   S + +  + S D+D DH  + SDG
Sbjct: 446 CNAGPEDIQSRIGHCMLFHSKN--RCLYVFGGQR--SKTYLNDFFSYDVDSDHVDIISDG 501

Query: 327 ---ESGLLPLFNSKAREAVE 377
              +SG++P+     R  ++
Sbjct: 502 TKKDSGMVPMTGFTQRATID 521
tr_hit_id A6RVG8
Definition tr|A6RVG8|A6RVG8_BOTFB Putative uncharacterized protein OS=Botryotinia fuckeliana (strain B05.10)
Align length 107
Score (bit) 37.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963360|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_F08, 5'
         (636 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6RVG8|A6RVG8_BOTFB Putative uncharacterized protein OS=Botry...    37   1.00 
tr|A8GEK8|A8GEK8_SERP5 Putative RNase H OS=Serratia proteamacula...    34   8.6  

>tr|A6RVG8|A6RVG8_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_04605
           PE=4 SV=1
          Length = 873

 Score = 37.0 bits (84), Expect = 1.00
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
 Frame = +3

Query: 186 LFPLFHSKALIRR*YHLRPQPVFSTSSITLYHSRDLDIDHRFVTSDGESGLLPLFNSKAR 365
           LF  F S  +       R + +FS S  T+  SRD D     +        +P   SKAR
Sbjct: 652 LFQAFQSVQIKATPKTNRQKDIFSESHSTIGRSRDFDQMELGIIPPSSVPTIP--QSKAR 709

Query: 366 EAVEMKPFLYRIFC--TYASSASPFRSTHHAACWRAQLQIIPAQKPL 500
            + ++ PF   +    T   S+S FRST + A + A    +P   PL
Sbjct: 710 SSYDLDPFRDSVQATPTRKPSSSSFRSTSNFANYDADYGAMPPSSPL 756


>tr|A8GEK8|A8GEK8_SERP5 Putative RNase H OS=Serratia proteamaculans
           (strain 568) GN=Spro_2447 PE=4 SV=1
          Length = 122

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 195 EEIGRSRHRY*EDGNYKALLLKRGSRPI-----SPSLVTEAMINIQVSRMIQGD*GG*EY 31
           EEIGRS H Y +     AL ++ G  PI       +++TE  + +      QGD GG   
Sbjct: 32  EEIGRSGHYYDKQQTLAALQIENGQTPIFSEGFKLAIITEGAVLLTYRSFQQGDDGGVTR 91

Query: 30  C 28
           C
Sbjct: 92  C 92