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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963368
Clone id TST39A01NGRL0016_F16
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_F16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCATCAGCTGGAGTGCCTACCAACGGTTGACCTGTTGTTTAAACACCAGAGTCTCAAGG
ACGATGAACATGGGGGGAGGCATTTTGTTAAGGACTGTTGGTCGTGCAGCTGGTTCAACG
ACACCCACCGCATCAACTGCCTTTTGTTCAGCTTGTACTGGCCAAGTCCCTCGACCCTCA
TCCTTGCGTACCGTATGTCGTGCGTGTCAGAATGCTACCCTCTCTCATCAAGCTTCAGGA
ACTGTAAACCCAAATGAGTTTGATGATTGGGAGTTTGCCGATGACTTAGTATCCGACAAT
GTAAATAGGTCATTGTTTGCTCAAGATACTAGATTACTGTTTTCATCTACTCCCTCGGCG
TCTTCACATTCTTCAGTGTGTGATGATACTCTGCCTTCTGATAACCGCGACTGGCATGTT
TTTGGCCTCCCTCCGACTTTTGATGAAGTGTATGCGGCAACTACTGATCTCCAGGCGGCA
TTCATCGAGTCCAATAATGATCATCACACCAAAAGTACATCCTCTTGCTCCACAGCTGTG
GAACGTGAAGCATTCTTTCCACAAGCAAGCAACAAAGGTAGTGATTCTGAAAAAGAACCC
CATTCACCACATTCTGGTGAA
■■Homology search results ■■ -
sp_hit_id Q21J10
Definition sp|Q21J10|LPXK_SACD2 Tetraacyldisaccharide 4'-kinase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Align length 37
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963368|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_F16, 5'
         (621 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q21J10|LPXK_SACD2 Tetraacyldisaccharide 4'-kinase OS=Saccharo...    33   1.6  
sp|Q6EW47|YCF3_NYMAL Photosystem I assembly protein ycf3 OS=Nymp...    31   5.9  
sp|A1XFV6|YCF3_NUPAD Photosystem I assembly protein ycf3 OS=Nuph...    31   5.9  
sp|A6MM37|YCF3_BUXMI Photosystem I assembly protein ycf3 OS=Buxu...    31   5.9  
sp|Q70Y02|YCF3_AMBTC Photosystem I assembly protein ycf3 OS=Ambo...    31   5.9  
sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS...    30   7.7  

>sp|Q21J10|LPXK_SACD2 Tetraacyldisaccharide 4'-kinase
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=lpxK PE=3 SV=1
          Length = 361

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 158 VQAEQKAVDAVGVVEPAARPTVLNKMPPPMFIVLETL 48
           V A  +A++A+   E +++P  LNK P P+F  LE +
Sbjct: 208 VNARLQALEAINAAELSSKPNKLNKTPAPVFAQLEAV 244


>sp|Q6EW47|YCF3_NYMAL Photosystem I assembly protein ycf3
           OS=Nymphaea alba GN=ycf3 PE=3 SV=1
          Length = 168

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 484 IESNNDHHTKSTSSCSTAVEREAFFPQASN 573
           I ++N  HTK+      A+ER  F PQASN
Sbjct: 81  IHTSNGEHTKALEYYFRALERNPFLPQASN 110


>sp|A1XFV6|YCF3_NUPAD Photosystem I assembly protein ycf3 OS=Nuphar
           advena GN=ycf3 PE=3 SV=1
          Length = 168

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 484 IESNNDHHTKSTSSCSTAVEREAFFPQASN 573
           I ++N  HTK+      A+ER  F PQASN
Sbjct: 81  IHTSNGEHTKALEYYFRALERNPFLPQASN 110


>sp|A6MM37|YCF3_BUXMI Photosystem I assembly protein ycf3 OS=Buxus
           microphylla GN=ycf3 PE=3 SV=1
          Length = 168

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 484 IESNNDHHTKSTSSCSTAVEREAFFPQASN 573
           I ++N  HTK+    S A+ER  F PQA N
Sbjct: 81  IHTSNGEHTKALEYYSRALERNPFLPQAFN 110


>sp|Q70Y02|YCF3_AMBTC Photosystem I assembly protein ycf3
           OS=Amborella trichopoda GN=ycf3 PE=3 SV=1
          Length = 168

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 484 IESNNDHHTKSTSSCSTAVEREAFFPQASN 573
           I ++N  HTK+      A+ER  F PQASN
Sbjct: 81  IHTSNGEHTKALEYYFRALERNPFLPQASN 110


>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase
           OS=Petunia hybrida GN=FL PE=2 SV=1
          Length = 348

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 200 RHTVRKDEGRGTWPVQAEQKAVDAVGVVEPAARPTVLNKMPPPMF 66
           R TV KD+ R +WPV  E  +   VG +     P +L++  PP F
Sbjct: 291 RTTVNKDKTRMSWPVFLEPPSEHEVGPI-----PKLLSEANPPKF 330
tr_hit_id A7P8E2
Definition tr|A7P8E2|A7P8E2_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera
Align length 110
Score (bit) 35.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963368|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_F16, 5'
         (621 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P8E2|A7P8E2_VITVI Chromosome chr3 scaffold_8, whole genome ...    35   2.8  
tr|Q0S3N9|Q0S3N9_RHOSR Transcriptional regulator, AcrR family pr...    35   4.7  
tr|B0MQB3|B0MQB3_9FIRM Putative uncharacterized protein OS=Eubac...    28   6.1  

>tr|A7P8E2|A7P8E2_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036146001
           PE=4 SV=1
          Length = 676

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 26/110 (23%), Positives = 44/110 (40%)
 Frame = +1

Query: 214 ATLSHQASGTVNPNEFDDWEFADDLVSDNVNRSLFAQDTRLLFXXXXXXXXXXXVCDDTL 393
           AT+S   S T+NP+   +     ++ SD     L  +D  L             + D  L
Sbjct: 270 ATMSPTISPTINPSSHVESPIQLEVESDTAESDLENEDEVLSDEADTPISPSMRMADKNL 329

Query: 394 PSDNRDWHVFGLPPTFDEVYAATTDLQAAFIESNNDHHTKSTSSCSTAVE 543
             +   W VF     FD+V+  T D   +   ++ D  T +    S+++E
Sbjct: 330 EDNKATWSVFDANDDFDKVFDFTNDANPS---NSTDKQTNAKLETSSSLE 376


>tr|Q0S3N9|Q0S3N9_RHOSR Transcriptional regulator, AcrR family
           protein OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro06070
           PE=4 SV=1
          Length = 207

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -2

Query: 446 SSKVGGRPKTCQSRLSEGRVSSHTEECEDAEGVDENSNLVS*ANNDLFTLSDTK 285
           SS++G RP T Q R+S   +   TE+  DA  VDE +     A   LF    +K
Sbjct: 8   SSRIGRRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSK 61


>tr|B0MQB3|B0MQB3_9FIRM Putative uncharacterized protein
           OS=Eubacterium siraeum DSM 15702 GN=EUBSIR_02029 PE=4
           SV=1
          Length = 691

 Score = 28.5 bits (62), Expect(2) = 6.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 81  HFVKDCWSCSWFNDTHRINCLLFSLYWPSPSTLILAYRMSCVSEC 215
           +FV DCW+   F+ TH+I          +P +  +A +  C   C
Sbjct: 238 YFVSDCWAIRDFHTTHKITD-------TAPQSAAMALKAGCDVNC 275



 Score = 24.6 bits (52), Expect(2) = 6.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 202 ACQNATLSHQASGTVNPNEFDDWEFADDLVSDNVNRSL 315
           AC +A  +    G ++ NEFDD  F  D+++ + N++L
Sbjct: 299 ACIHALRTRIRLGQLDDNEFDDLPF--DIIACDGNKAL 334