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NBDC - LSDB Archive
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DK963385
Clone id TST39A01NGRL0016_G09
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_G09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGCACCTACTGCCTTCGCAAGTAGGTTTAGGGTTTCTGCAGTAGAGCAGCTATGGTGTCC
GCCTGCTTCTCTTCAGTTAATGGTTCGCTTGCAGCAGCAGCTGCCTCCACCACTAGGCCA
GAGGGGCGTTTAACCCTGTTGCAGGCTCCCCGCTCCTTGCGGACCTTGCGACCGTTCGAG
CTTCGCATGCTCTCGCTGTCTGTCCCTCGCAAAGGTCTACACAGACATGGATATGGTGTG
GTTGGGCAAGCTCATGCAGAGCTTTCTGTGGAAGAAGTTCAAGCCCTCGATGCCTCCTCA
GACGAAGATGAGCGCGAAGAAGGTGACTCTCTTGATAACGGACCTTCTTTTCGGGACAAC
GGCCCGCCCTTTGGTGAGTCTGTGGCCAAGCTGTATGTTGGGAACCTGCCATGGAGCTGC
AACAGCGAAGAACTTGCTGGCGTTTTTCAGAAAGTGGGCAGCGTAGACATGGTTGAGGTT
ATTTATGACAAAGAGTCTGGCAGGAGTCGTGGTTTTGGGTTTGTCACTATGAGCTCTGTA
GAGGACTGTAATACTGCCATTGAGAAGCTAGACGGGGCTGATTATGCTGGAAGGACATTG
CGA
■■Homology search results ■■ -
sp_hit_id Q9ZUU4
Definition sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
Align length 88
Score (bit) 89.7
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963385|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_G09, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chlor...    90   1e-17
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O...    89   1e-17
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=...    89   1e-17
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=...    89   2e-17
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O...    87   9e-17
sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=S...    86   2e-16
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=...    84   4e-16
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=...    83   9e-16
sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=...    82   2e-15
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=...    82   3e-15
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=...    79   1e-14
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=...    78   3e-14
sp|Q44554|RBPB_ANASP Putative RNA-binding protein rbpB OS=Anabae...    70   1e-11
sp|Q9WX37|RBPE_ANASP Putative RNA-binding protein rbpE OS=Anabae...    69   1e-11
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit...    68   3e-11
sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor 64 kDa subunit...    68   3e-11
sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein rbpA OS=Synech...    67   7e-11
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sa...    67   7e-11
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=...    67   9e-11
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=...    67   9e-11
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=...    67   9e-11
sp|Q9WX39|RBPF_ANASP Putative RNA-binding protein rbpF OS=Anabae...    66   1e-10
sp|Q44560|RBPA_ANASP Putative RNA-binding protein rbpA OS=Anabae...    66   1e-10
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor 64 kDa subunit...    66   1e-10
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor 64 kDa subunit...    66   1e-10
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor 64 kDa subunit...    66   1e-10
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor 64 kDa subunit...    66   2e-10
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh...    65   3e-10
sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pong...    65   3e-10
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo...    65   3e-10

>sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220,
           chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1
           SV=1
          Length = 289

 Score = 89.7 bits (221), Expect = 1e-17
 Identities = 46/88 (52%), Positives = 63/88 (71%), Gaps = 3/88 (3%)
 Frame = +1

Query: 349 FRDNGPPFGESVA---KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFG 519
           F D  PP  +S +   KL+VGNLP++ +S +LA +F+  G+V+MVEVIYDK +GRSRGFG
Sbjct: 76  FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135

Query: 520 FVTMSSVEDCNTAIEKLDGADYAGRTLR 603
           FVTMSSV +   A ++ +G +  GR LR
Sbjct: 136 FVTMSSVSEVEAAAQQFNGYELDGRPLR 163



 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 38/89 (42%), Positives = 52/89 (58%)
 Frame = +1

Query: 337 NGPSFRDNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGF 516
           +G  +   G     S  ++YVGNL W  +   L  +F + G V    VIYD++SGRS+GF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247

Query: 517 GFVTMSSVEDCNTAIEKLDGADYAGRTLR 603
           GFVT  S ++   AI+ LDGAD  GR +R
Sbjct: 248 GFVTYDSSQEVQNAIKSLDGADLDGRQIR 276


>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic
           OS=Nicotiana sylvestris PE=2 SV=1
          Length = 291

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 44/80 (55%), Positives = 61/80 (76%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P F E + KL+VGNLP+S +S  LAG+F++ G+V+MVEVIYDK +GRSRGFGFVTMS+ E
Sbjct: 81  PRFSEDL-KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           +   A ++ +G +  GR +R
Sbjct: 140 EVEAAEQQFNGYEIDGRAIR 159



 Score = 77.4 bits (189), Expect = 5e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
 Frame = +1

Query: 352 RDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRS 507
           RD    FG        +S  ++YVGNL W  +   L  +F + G+V   +V+YD++SGRS
Sbjct: 188 RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRS 247

Query: 508 RGFGFVTMSSVEDCNTAIEKLDGADYAGRTLR 603
           RGFGFVT SS ++ N AI+ L+G D  GR++R
Sbjct: 248 RGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIR 279


>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic
           OS=Spinacia oleracea PE=1 SV=1
          Length = 233

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
 Frame = +1

Query: 355 DNGPPFGE--SVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVT 528
           + G  F E    AKL+VGNLP+  +SE+LAG+F   G V++ EVIY++E+ RSRGFGFVT
Sbjct: 43  EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102

Query: 529 MSSVEDCNTAIEKLDGADYAGRTL 600
           MS+VE+   A+E L+G D  GR L
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQL 126



 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 37/76 (48%), Positives = 48/76 (63%)
 Frame = +1

Query: 376 ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNT 555
           E   ++YVGNLPW  ++  L  +F + G V    V+ D+E+GRSRGFGFVTMSS  + N 
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205

Query: 556 AIEKLDGADYAGRTLR 603
           AI  LDG    GR +R
Sbjct: 206 AIAALDGQTLDGRAVR 221


>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic
           OS=Nicotiana plumbaginifolia PE=2 SV=1
          Length = 292

 Score = 89.0 bits (219), Expect = 2e-17
 Identities = 44/80 (55%), Positives = 61/80 (76%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P F E + KL+VGNLP+S +S  LAG+F++ G+V++VEVIYDK SGRSRGFGFVTMS+ E
Sbjct: 82  PRFSEDL-KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           +   A ++ +G +  GR +R
Sbjct: 141 EVEAAEQQFNGYEIDGRAIR 160



 Score = 77.8 bits (190), Expect = 4e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
 Frame = +1

Query: 352 RDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRS 507
           RD    FG        +S  ++YVGNL W  +   L  +F + G+V   +V+YD++SGRS
Sbjct: 189 RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRS 248

Query: 508 RGFGFVTMSSVEDCNTAIEKLDGADYAGRTLR 603
           RGFGFVT SS ++ N AI+ L+G D  GR++R
Sbjct: 249 RGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIR 280


>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic
           OS=Nicotiana sylvestris PE=2 SV=1
          Length = 273

 Score = 86.7 bits (213), Expect = 9e-17
 Identities = 41/72 (56%), Positives = 56/72 (77%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           K++VGNLP+S +S  LA +F++ G+V+MVEVIYDK +GRSRGFGFVTMSS E+   A ++
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 568 LDGADYAGRTLR 603
            +G +  GR LR
Sbjct: 148 FNGYELDGRALR 159



 Score = 83.6 bits (205), Expect = 7e-16
 Identities = 39/76 (51%), Positives = 52/76 (68%)
 Frame = +1

Query: 376 ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNT 555
           +S  ++YVGNL W  + + L  +F + G V   +V+YD++SGRSRGFGFVT SS E+ N 
Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244

Query: 556 AIEKLDGADYAGRTLR 603
           AIE LDG D  GR +R
Sbjct: 245 AIESLDGVDLNGRAIR 260


>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic
           OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1
          Length = 260

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 38/77 (49%), Positives = 56/77 (72%)
 Frame = +1

Query: 373 GESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCN 552
           GE   +LYVGN+P + N++EL  + ++ G++++ EV+YDK SGRSR FGFVTM +VED N
Sbjct: 80  GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 139

Query: 553 TAIEKLDGADYAGRTLR 603
             IEKL+  +  GR ++
Sbjct: 140 AVIEKLNDTEIGGRKIK 156



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 28/78 (35%), Positives = 43/78 (55%)
 Frame = +1

Query: 370 FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDC 549
           F ES  K+Y+GNL  +  +E L   F + G V   +V     + +S GFGFV+ SS E+ 
Sbjct: 179 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEV 238

Query: 550 NTAIEKLDGADYAGRTLR 603
             AI+ L+ +   G+ +R
Sbjct: 239 EAAIQALNNSVLEGQKIR 256


>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic
           OS=Nicotiana plumbaginifolia PE=2 SV=1
          Length = 279

 Score = 84.3 bits (207), Expect = 4e-16
 Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 8/94 (8%)
 Frame = +1

Query: 346 SFRDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESG 501
           SFR+N    G        +S  ++YVGNL W  + + L  +F + G V   +V+YD++SG
Sbjct: 173 SFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 232

Query: 502 RSRGFGFVTMSSVEDCNTAIEKLDGADYAGRTLR 603
           RSRGFGFVT SS E+ N AIE LDG D  GR +R
Sbjct: 233 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266



 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 40/72 (55%), Positives = 55/72 (76%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           K++VGNL +S +S  LA +F++ G+V+MVEVIYDK +GRSRGFGFVTMSS E+   A ++
Sbjct: 88  KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 568 LDGADYAGRTLR 603
            +G +  GR LR
Sbjct: 148 FNGYELDGRALR 159


>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic
           OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1
          Length = 329

 Score = 83.2 bits (204), Expect = 9e-16
 Identities = 39/72 (54%), Positives = 56/72 (77%)
 Frame = +1

Query: 385 AKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIE 564
           AKL+VGNL +  NS+ LA +F++ G+V++ EVIY++E+ +SRGFGFVTMSSV++  TA+E
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209

Query: 565 KLDGADYAGRTL 600
           K +  D  GR L
Sbjct: 210 KFNRYDLNGRLL 221



 Score = 83.2 bits (204), Expect = 9e-16
 Identities = 39/83 (46%), Positives = 53/83 (63%)
 Frame = +1

Query: 355 DNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 534
           +  P   E   ++YVGNLPW  ++  L  +F + G V    V+YD+E+GRSRGFGFVTMS
Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293

Query: 535 SVEDCNTAIEKLDGADYAGRTLR 603
            V++ N AI  LDG +  GR +R
Sbjct: 294 DVDELNEAISALDGQNLEGRAIR 316


>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic
           OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2
          Length = 342

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 38/72 (52%), Positives = 55/72 (76%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KL+VGNL ++ +S +LA +F+  G+V+MVEVIYDK +GRSRGFGFVTMS+  +   A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 568 LDGADYAGRTLR 603
            +G ++ GR LR
Sbjct: 160 FNGYEFEGRPLR 171



 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 36/72 (50%), Positives = 48/72 (66%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           +LYVGNL W  +   L  +F + G V    VIYD++SGRS+GFGFVT+SS ++   AI  
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 568 LDGADYAGRTLR 603
           L+GAD  GR +R
Sbjct: 318 LNGADLDGRQIR 329


>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic
           OS=Nicotiana sylvestris PE=1 SV=1
          Length = 276

 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 40/72 (55%), Positives = 54/72 (75%)
 Frame = +1

Query: 385 AKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIE 564
           AKL+VGNLP+  +SE LA +FQ+ G V++ EVIY++E+ RSRGFGFVTMS+VE+ + A+E
Sbjct: 97  AKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 156

Query: 565 KLDGADYAGRTL 600
                D  GR L
Sbjct: 157 LYSQYDLNGRLL 168



 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 38/83 (45%), Positives = 51/83 (61%)
 Frame = +1

Query: 355 DNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 534
           +  P   +   ++YVGN+PW  +   L  VF + G V    V++D+ESGRSRGFGFVTMS
Sbjct: 181 ERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMS 240

Query: 535 SVEDCNTAIEKLDGADYAGRTLR 603
           S  + + AI  LDG    GRT+R
Sbjct: 241 SEAEMSEAIANLDGQTLDGRTIR 263
tr_hit_id A5BDH4
Definition tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 72
Score (bit) 109.0
E-value 1.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963385|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_G09, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis...   109   1e-22
tr|A7NXI6|A7NXI6_VITVI Chromosome chr5 scaffold_2, whole genome ...   108   2e-22
tr|A9SLJ0|A9SLJ0_PHYPA Predicted protein (Fragment) OS=Physcomit...   102   1e-20
tr|Q41124|Q41124_PHAVU Chloroplast RNA binding protein OS=Phaseo...   100   5e-20
tr|B4FLX0|B4FLX0_MAIZE Putative uncharacterized protein OS=Zea m...   100   9e-20
tr|A9PFU9|A9PFU9_POPTR Putative uncharacterized protein OS=Popul...    99   1e-19
tr|B7FKI6|B7FKI6_MEDTR Putative uncharacterized protein OS=Medic...    98   4e-19
tr|Q6K6C4|Q6K6C4_ORYSJ Os02g0815200 protein OS=Oryza sativa subs...    97   1e-18
tr|A2XAZ0|A2XAZ0_ORYSI Putative uncharacterized protein OS=Oryza...    97   1e-18
tr|B6U471|B6U471_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1       96   1e-18
tr|O04240|O04240_VICFA RNA- or ssDNA-binding protein (Fragment) ...    95   4e-18
tr|A6N1F5|A6N1F5_ORYSI Chloroplast 29 kDa ribonucleoprotein (Fra...    95   4e-18
tr|Q8LHN4|Q8LHN4_ORYSJ Os07g0631900 protein OS=Oryza sativa subs...    94   5e-18
tr|B6T531|B6T531_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1       94   5e-18
tr|A2YNZ1|A2YNZ1_ORYSI Putative uncharacterized protein OS=Oryza...    94   5e-18
tr|Q8S7G2|Q8S7G2_ORYSA Putative ribonucleoprotein OS=Oryza sativ...    94   8e-18
tr|Q10KP0|Q10KP0_ORYSJ Os03g0376600 protein OS=Oryza sativa subs...    94   8e-18
tr|A9NTU4|A9NTU4_PICSI Putative uncharacterized protein OS=Picea...    94   8e-18
tr|A2XHA8|A2XHA8_ORYSI Putative uncharacterized protein OS=Oryza...    94   8e-18
tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein OS=Physcomitrella paten...    93   1e-17
tr|A9SSU3|A9SSU3_PHYPA Predicted protein OS=Physcomitrella paten...    93   1e-17
tr|A9TLQ5|A9TLQ5_PHYPA Predicted protein (Fragment) OS=Physcomit...    92   2e-17
tr|A7PT43|A7PT43_VITVI Chromosome chr8 scaffold_29, whole genome...    92   2e-17
tr|A9P1T0|A9P1T0_PICSI Putative uncharacterized protein OS=Picea...    92   3e-17
tr|A9NNN9|A9NNN9_PICSI Putative uncharacterized protein OS=Picea...    92   3e-17
tr|Q8L941|Q8L941_ARATH Putative RNA-binding protein OS=Arabidops...    90   1e-16
tr|Q7GA50|Q7GA50_ARATH Putative RNA-binding protein OS=Arabidops...    90   1e-16
tr|Q41367|Q41367_SPIOL 24 kDa RNA binding protein (Fragment) OS=...    90   1e-16
tr|B6SS58|B6SS58_MAIZE Ribonucleoprotein OS=Zea mays PE=2 SV=1         87   6e-16
tr|B4FMY7|B4FMY7_MAIZE Putative uncharacterized protein OS=Zea m...    87   6e-16

>tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026573 PE=4 SV=1
          Length = 355

 Score =  109 bits (273), Expect = 1e-22
 Identities = 49/72 (68%), Positives = 60/72 (83%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KLY GNLP+SC+S  LAG+ Q  GS ++VEV+YD+++GRSRGF FVTMSSVEDCN  IE 
Sbjct: 67  KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126

Query: 568 LDGADYAGRTLR 603
           LDG++Y GRTLR
Sbjct: 127 LDGSEYGGRTLR 138



 Score = 47.0 bits (110), Expect = 9e-04
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESG 501
           P + E+  KL+VGNL WS  SE L  VFQ+ G+V    V+YD E+G
Sbjct: 150 PLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETG 195


>tr|A7NXI6|A7NXI6_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020349001
           PE=4 SV=1
          Length = 283

 Score =  108 bits (270), Expect = 2e-22
 Identities = 48/72 (66%), Positives = 61/72 (84%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KLY GNLP+SC+S +LAG+ Q  GS ++VEV+Y++++GRSRGF FVTMSSVEDCN  IE 
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171

Query: 568 LDGADYAGRTLR 603
           LDG++Y GRTLR
Sbjct: 172 LDGSEYGGRTLR 183



 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 39/80 (48%), Positives = 54/80 (67%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P + E+  KL+VGNL WS  SE L  VFQ+ G+V    V+YD E+GRSRG+GFV  S+  
Sbjct: 195 PLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKA 254

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           + +TA+E L+G +  GR +R
Sbjct: 255 EMDTALESLNGVELEGRAIR 274


>tr|A9SLJ0|A9SLJ0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47163 PE=4 SV=1
          Length = 192

 Score =  102 bits (255), Expect = 1e-20
 Identities = 46/72 (63%), Positives = 58/72 (80%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KLY+GNLPW C+S +LAG+ Q+ GSV++VEVIYD+ESGRSRGF FVTM++ ED    IE+
Sbjct: 1   KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60

Query: 568 LDGADYAGRTLR 603
           LDG D  GR L+
Sbjct: 61  LDGHDVGGRPLK 72



 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 37/72 (51%), Positives = 49/72 (68%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           K++VGNL W  ++  L  +F   G V    V+YD+ESGRSRGFGFVT S V + + AI+ 
Sbjct: 108 KVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDS 167

Query: 568 LDGADYAGRTLR 603
           LDGA++ GR LR
Sbjct: 168 LDGAEFDGRELR 179


>tr|Q41124|Q41124_PHAVU Chloroplast RNA binding protein OS=Phaseolus
           vulgaris GN=RNP1 PE=2 SV=1
          Length = 287

 Score =  100 bits (250), Expect = 5e-20
 Identities = 44/72 (61%), Positives = 58/72 (80%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KLY GNLP+S +S +LAG+ Q  GS +++EV+YD+++G+SRGF FVTMS +EDCN  IE 
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173

Query: 568 LDGADYAGRTLR 603
           LDG +Y GRTLR
Sbjct: 174 LDGKEYLGRTLR 185



 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 35/80 (43%), Positives = 50/80 (62%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P + E+  KL+VGNL WS  +E L   FQ+ G+V    V+YD E+GRSRG+GFV  S+ E
Sbjct: 197 PLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKE 256

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           +   A+  L+  +  GR +R
Sbjct: 257 EMEAALGALNDVELEGRAMR 276


>tr|B4FLX0|B4FLX0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 287

 Score =  100 bits (248), Expect = 9e-20
 Identities = 47/90 (52%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
 Frame = +1

Query: 340 GPSFRDNGPPFGESVA--KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRG 513
           G S  D+GP    S    KLY GNLP++C+S +LAG+ Q+  S +MVEV+YD+ +GRSRG
Sbjct: 99  GASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRG 158

Query: 514 FGFVTMSSVEDCNTAIEKLDGADYAGRTLR 603
           F FVTM++V+DC   I+ LDG+ Y GRT++
Sbjct: 159 FAFVTMTTVQDCELVIKNLDGSLYGGRTMK 188



 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
 Frame = +1

Query: 346 SFRDNGPP----FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRG 513
           +F D   P    + E+  KL+VGNL W+  SE L   F + G+V    V+YD E+GRSRG
Sbjct: 190 NFADRPKPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRG 249

Query: 514 FGFVTMSSVEDCNTAIEKLDGADYAGRTLR 603
           +GFV  S+ E+ + A+  L+G +  GR +R
Sbjct: 250 YGFVCYSTREEMDEALSSLNGMEMEGREMR 279


>tr|A9PFU9|A9PFU9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 279

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 45/72 (62%), Positives = 58/72 (80%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KLY GNLP++ +S +LAG+ Q+ G+ +MVEV+Y +E+GRSRGF FVTMSS+EDC T IE 
Sbjct: 108 KLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIEN 167

Query: 568 LDGADYAGRTLR 603
           LDG+ Y GR LR
Sbjct: 168 LDGSQYMGRILR 179



 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 37/80 (46%), Positives = 53/80 (66%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P + E+  KL++GNL WS  SE L   FQ+ G+V    V+YD E+G+SRG+GFV  S+ E
Sbjct: 191 PLYPETEYKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKE 250

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           +  TA++ L+G +  GR LR
Sbjct: 251 ELETALQSLNGVELEGRALR 270


>tr|B7FKI6|B7FKI6_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 285

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 6/83 (7%)
 Frame = +1

Query: 373 GESVA------KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 534
           GE+VA      KLY GNLP+S +S  LAG+ ++ GS +++EV+YD+++G+SRGF FVTMS
Sbjct: 103 GETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS 162

Query: 535 SVEDCNTAIEKLDGADYAGRTLR 603
            VEDCN  I+ LDG ++ GRTLR
Sbjct: 163 CVEDCNAVIQNLDGKEFMGRTLR 185



 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 34/80 (42%), Positives = 53/80 (66%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P + E+  KL+VGNL W+  SE L   FQ+ G+V    V++D E+G+SRG+GFV+ ++  
Sbjct: 197 PLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKS 256

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           + +TA+  +D  +  GRTLR
Sbjct: 257 EMDTALAIMDNVELEGRTLR 276


>tr|Q6K6C4|Q6K6C4_ORYSJ Os02g0815200 protein OS=Oryza sativa subsp.
           japonica GN=P0643F09.1 PE=2 SV=1
          Length = 316

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 42/72 (58%), Positives = 58/72 (80%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KLY GNLP++C+S +LAG+ Q   + +MVEV+YD+ +GRSRGF FVTMS++EDC   I+ 
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205

Query: 568 LDGADYAGRTLR 603
           LDG+ Y+GRT+R
Sbjct: 206 LDGSLYSGRTMR 217



 Score = 77.0 bits (188), Expect = 8e-13
 Identities = 37/80 (46%), Positives = 53/80 (66%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P + E+  KL+VGNL W+  SE L  +FQK G+V    V+YD E+GRSRG+GFV  S+ E
Sbjct: 229 PLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKE 288

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           + + A+  L+G +  GR +R
Sbjct: 289 EMDEALSSLNGTELEGREIR 308


>tr|A2XAZ0|A2XAZ0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09422 PE=4 SV=1
          Length = 318

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 42/72 (58%), Positives = 58/72 (80%)
 Frame = +1

Query: 388 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 567
           KLY GNLP++C+S +LAG+ Q   + +MVEV+YD+ +GRSRGF FVTMS++EDC   I+ 
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207

Query: 568 LDGADYAGRTLR 603
           LDG+ Y+GRT+R
Sbjct: 208 LDGSLYSGRTMR 219



 Score = 77.0 bits (188), Expect = 8e-13
 Identities = 37/80 (46%), Positives = 53/80 (66%)
 Frame = +1

Query: 364 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 543
           P + E+  KL+VGNL W+  SE L  +FQK G+V    V+YD E+GRSRG+GFV  S+ E
Sbjct: 231 PLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKE 290

Query: 544 DCNTAIEKLDGADYAGRTLR 603
           + + A+  L+G +  GR +R
Sbjct: 291 EMDEALSSLNGTELEGREIR 310


>tr|B6U471|B6U471_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1
          Length = 268

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 46/83 (55%), Positives = 63/83 (75%)
 Frame = +1

Query: 355 DNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 534
           D    F E + KL+VGNLP+S +S +LAG+F++ GSV+MVEV+YD+ +GRSRGFGFVTMS
Sbjct: 70  DGSEEFSEDL-KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMS 128

Query: 535 SVEDCNTAIEKLDGADYAGRTLR 603
           S E+   A+E+ +G  + GR LR
Sbjct: 129 SAEEAEAAVEQFNGYAFQGRQLR 151



 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 40/81 (49%), Positives = 52/81 (64%)
 Frame = +1

Query: 361 GPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSV 540
           G  F +S  K+YVGNL W  ++  L  +F + G V   +VIYD++SGRSRGFGFVT  S 
Sbjct: 176 GGGFVDSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSA 235

Query: 541 EDCNTAIEKLDGADYAGRTLR 603
           ++ N AI  LDG D  GR +R
Sbjct: 236 QEVNNAISNLDGIDLDGRQIR 256