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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963391
Clone id TST39A01NGRL0016_G15
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_G15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCAGATTCCTGCAGGACGCATTTGAACAGGCACGATGATGAGGTCTCTCAGCTCCTTAGC
TAGTTCGAGCATCTCTGTGAGGCACATCGCTCTGCGAAGGTGGTCTTCCTGTGCCTTTTT
TAGAGGGAGCTTGTCCCGCCTGGCTATGGTAGACCGCGCCCTCGTCTCTCAGGTACTTCC
TTGCACTACTTTGAAAGTGTCAGCTACATACGACTCACGCCCCCGTAGAAACTACAGACG
GGAGCCTCGCCCTTCTGTTTCCGAGCTCGACCTTGAAGAGGAAGTCAGCCGCATTGACAT
GGATCCTGCTAAGATGATGCAGCCTGCCGACCCTGGTGCCATGCAAGCAGTTATCAAAGA
AGTCATGCCTGTTGGTTACTTTTGTACCCTGCCCTCAGGCAGGATCGGCTACCTCCCTGC
TCAGGATTTAGGGTTTACAGGTGGGCTTGCGATCCTGCAGCGGCTCTTCAAAGAGGGGCA
AGAGATAACTGTACGCATTGTATGCAGAGGGGGTGCTGGCAGAGAAATTATTTCTTGCAA
AAAACCTGAGTTTGCTCCCCC
■■Homology search results ■■ -
sp_hit_id Q4ZQ33
Definition sp|Q4ZQ33|DCTA_PSEU2 C4-dicarboxylate transport protein OS=Pseudomonas syringae pv. syringae (strain B728a)
Align length 52
Score (bit) 33.1
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963391|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_G15, 5'
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4ZQ33|DCTA_PSEU2 C4-dicarboxylate transport protein OS=Pseud...    33   0.96 
sp|Q48FG6|DCTA_PSE14 C4-dicarboxylate transport protein OS=Pseud...    33   1.2  
sp|Q98930|SORL_CHICK Sortilin-related receptor (Fragment) OS=Gal...    33   1.3  
sp|Q9I4F5|DCTA2_PSEAE C4-dicarboxylate transport protein 2 OS=Ps...    32   2.8  
sp|Q02J03|DCTA2_PSEAB C4-dicarboxylate transport protein 2 OS=Ps...    32   2.8  
sp|A6V915|DCTA2_PSEA7 C4-dicarboxylate transport protein 2 OS=Ps...    32   2.8  
sp|A7HH69|MURB_ANADF UDP-N-acetylenolpyruvoylglucosamine reducta...    31   3.6  
sp|Q885Z9|DCTA_PSESM C4-dicarboxylate transport protein OS=Pseud...    31   3.6  
sp|Q9UJA2|CRLS1_HUMAN Cardiolipin synthetase OS=Homo sapiens GN=...    31   3.7  
sp|A1A4L6|ETS2_BOVIN Protein C-ets-2 OS=Bos taurus GN=ETS2 PE=2 ...    30   8.1  
sp|Q47BQ7|DCTA_DECAR C4-dicarboxylate transport protein OS=Dechl...    30   8.1  

>sp|Q4ZQ33|DCTA_PSEU2 C4-dicarboxylate transport protein
           OS=Pseudomonas syringae pv. syringae (strain B728a)
           GN=dctA PE=3 SV=1
          Length = 450

 Score = 33.1 bits (74), Expect = 0.96
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 302 DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 457
           D  K ++P   G ++ +   + P+  FCT+ SG  G    + +G TGG A+L
Sbjct: 31  DTGKALKPLGDGFIKLIKMVIAPI-IFCTVVSGIAGMQSMKSVGKTGGYALL 81


>sp|Q48FG6|DCTA_PSE14 C4-dicarboxylate transport protein
           OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
           Race 6) GN=dctA PE=3 SV=1
          Length = 460

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 302 DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 457
           D  K ++P   G ++ +   + P+  FCT+ SG  G    + +G TGG A+L
Sbjct: 41  DTGKALKPLGDGFIKLIKMVIAPI-IFCTVVSGIAGMQNMKSVGKTGGYALL 91


>sp|Q98930|SORL_CHICK Sortilin-related receptor (Fragment) OS=Gallus
            gallus GN=SORL1 PE=2 SV=1
          Length = 1592

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +1

Query: 307  C*DDAACRPWCHASSYQRSHACWLLLYPALRQDRLPPCSGFRVYRWACDPAAALQRGARD 486
            C DD  CR W   ++      C    +  L    +P        RWACD  A  Q G+ +
Sbjct: 1084 CDDDNDCRDWSDEANCTMFRTCEASSFQCLNGHCIPQ-------RWACDGDADCQDGSDE 1136

Query: 487  NCTHCMQR 510
            + T C ++
Sbjct: 1137 DPTICEKK 1144


>sp|Q9I4F5|DCTA2_PSEAE C4-dicarboxylate transport protein 2
           OS=Pseudomonas aeruginosa GN=dctA2 PE=3 SV=1
          Length = 436

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 302 DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 457
           + A  M+P   G ++ +   + P+  FCT+ +G  G    + +G TGG+A+L
Sbjct: 30  ETAVAMKPFGDGFVKLIKMAIAPI-IFCTVVTGIAGMQSMKSVGKTGGMALL 80


>sp|Q02J03|DCTA2_PSEAB C4-dicarboxylate transport protein 2
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dctA2
           PE=3 SV=1
          Length = 436

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 302 DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 457
           + A  M+P   G ++ +   + P+  FCT+ +G  G    + +G TGG+A+L
Sbjct: 30  ETAVAMKPFGDGFVKLIKMAIAPI-IFCTVVTGIAGMQSMKSVGKTGGMALL 80


>sp|A6V915|DCTA2_PSEA7 C4-dicarboxylate transport protein 2
           OS=Pseudomonas aeruginosa (strain PA7) GN=dctA2 PE=3
           SV=1
          Length = 436

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 302 DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 457
           + A  M+P   G ++ +   + P+  FCT+ +G  G    + +G TGG+A+L
Sbjct: 30  ETAVAMKPFGDGFVKLIKMAIAPI-IFCTVVTGIAGMQSMKSVGKTGGMALL 80


>sp|A7HH69|MURB_ANADF UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=murB PE=3
           SV=1
          Length = 318

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +2

Query: 314 MMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAILQRLFKEGQEITV 493
           +++PADPGA+ A+++ V  +    T+  G    L A D G  G +  L + F E      
Sbjct: 46  LVRPADPGALAALLRAVRELSVPLTILGGGANTLVA-DAGVRGVVLRLPQGFGEEARDGE 104

Query: 494 RIVCRGGA 517
           R+V   GA
Sbjct: 105 RLVLGAGA 112


>sp|Q885Z9|DCTA_PSESM C4-dicarboxylate transport protein
           OS=Pseudomonas syringae pv. tomato GN=dctA-1 PE=3 SV=1
          Length = 460

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 302 DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 457
           +  K ++P   G ++ +   + P+  FCT+ SG  G    + +G TGG A+L
Sbjct: 41  ETGKALKPLGDGFIKLIKMVIAPI-IFCTVVSGIAGMQNMKSVGKTGGYALL 91


>sp|Q9UJA2|CRLS1_HUMAN Cardiolipin synthetase OS=Homo sapiens
           GN=CRLS1 PE=2 SV=1
          Length = 301

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +1

Query: 334 WCHASSYQRSHACWLLLYPALRQDRLPPCSGFRVYRWACDPAAALQR----GARDNCT 495
           W   +   +  ACW LL P      +P C G    RW   PAA   R    G R++C+
Sbjct: 19  WAPGTRPSKRRACWALLPP------VPCCLGCLAERWRLRPAALGLRLPGIGQRNHCS 70


>sp|A1A4L6|ETS2_BOVIN Protein C-ets-2 OS=Bos taurus GN=ETS2 PE=2
           SV=1
          Length = 470

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = +3

Query: 219 APVETTDGSLALLFPS----STLKRKSAALTWIL--LR*CSLPTLVPCKQLSKKSCLLVT 380
           A  +T DGSL  +FPS     TL+     L  I      C LP L PC +      L  T
Sbjct: 27  AAFDTFDGSLLAVFPSLNEEQTLQEVPTGLDSISHDSANCELPLLTPCSKAVMSQALKAT 86

Query: 381 F 383
           F
Sbjct: 87  F 87
tr_hit_id Q28CX7
Definition tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis
Align length 71
Score (bit) 36.2
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963391|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_G15, 5'
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis G...    36   1.2  
tr|A9SQF4|A9SQF4_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.7  
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom...    34   4.7  
tr|Q1YL08|Q1YL08_MOBAS Nickel resistance protein, permease of ma...    34   4.8  
tr|B6T4L7|B6T4L7_MAIZE PP2A regulatory subunit TAP46 OS=Zea mays...    34   4.8  
tr|B4FQH3|B4FQH3_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.8  
tr|B6TVR5|B6TVR5_MAIZE PP2A regulatory subunit TAP46 OS=Zea mays...    34   6.3  
tr|B4FR84|B4FR84_MAIZE Putative uncharacterized protein OS=Zea m...    34   6.3  
tr|B6BFD2|B6BFD2_9RHOB Major facilitator superfamily MFS_1 OS=Rh...    33   8.2  
tr|Q84PC7|Q84PC7_ORYSJ PP2A regulatory subunit-like protein OS=O...    33   8.2  
tr|Q40666|Q40666_ORYSA Chilling-inducible protein OS=Oryza sativ...    33   8.2  
tr|Q2RAR4|Q2RAR4_ORYSJ TAP42-like family protein, expressed OS=O...    33   8.2  
tr|Q2RAR3|Q2RAR3_ORYSJ TAP42-like family protein, expressed OS=O...    33   8.2  
tr|Q2QY04|Q2QY04_ORYSJ Os12g0137500 protein OS=Oryza sativa subs...    33   8.2  
tr|Q0IUQ6|Q0IUQ6_ORYSJ Os11g0141000 protein (Fragment) OS=Oryza ...    33   8.2  
tr|B8BJ07|B8BJ07_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.2  
tr|A3CES3|A3CES3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   8.2  
tr|A3C8H5|A3C8H5_ORYSJ Putative uncharacterized protein OS=Oryza...    33   8.2  
tr|A3BN72|A3BN72_ORYSJ Putative uncharacterized protein OS=Oryza...    33   8.2  
tr|A2ZBB1|A2ZBB1_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.2  

>tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis
           GN=TTpA012i10.1-001 PE=2 SV=1
          Length = 417

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +2

Query: 332 PGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAILQRL----FKEGQEITVRI 499
           PG M   I+++   G    LP+  +G  PA + G+ G  AIL+++     K+G E+ + +
Sbjct: 79  PGTMTDAIRDI---GVKQPLPARGVGEKPATEFGYVGIDAILEQMRKKAMKQGFELNIMV 135

Query: 500 VCRGGAGREII 532
           V + G G+  +
Sbjct: 136 VGQSGLGKSTL 146


>tr|A9SQF4|A9SQF4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82528 PE=4 SV=1
          Length = 763

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +1

Query: 337 CHASSYQ-----RSHACWLLLYPALRQDRLPPCSGFRVYRWACDPAAALQRGARDNCTHC 501
           CH SS       RSH   +L Y   +  + P C  FR  R A +P   L    R++CTHC
Sbjct: 526 CHRSSQANDGGLRSH---VLAYQTFQVAK-PQCQCFRQLRTAAEPPQELYFEGRNSCTHC 581

Query: 502 MQR 510
             R
Sbjct: 582 KAR 584


>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
           PE=4 SV=1
          Length = 553

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 341 MQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTG-GLAILQRLFKEGQEITVRIVCRGGA 517
           ++  +K +   G F +LP G  G+LP  +    G G  +     + GQE++VR++ R   
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324

Query: 518 GREIISCKKPEFA 556
           G+  ++ KK E A
Sbjct: 325 GQVTLTMKKEEDA 337


>tr|Q1YL08|Q1YL08_MOBAS Nickel resistance protein, permease of major
           facilitator superfamily, NreB OS=Manganese-oxidizing
           bacterium (strain SI85-9A1) GN=SI859A1_01768 PE=4 SV=1
          Length = 460

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 316 DAACRPWCHASSYQRSHACWLLLYPA 393
           DA  RP   A+ +  SHACWL+ YPA
Sbjct: 332 DADSRPAVFAAQFALSHACWLVTYPA 357


>tr|B6T4L7|B6T4L7_MAIZE PP2A regulatory subunit TAP46 OS=Zea mays
           PE=2 SV=1
          Length = 423

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -1

Query: 147 IARRDKLPLKKAQEDHLRRAMCLTEMLELAKE 52
           +A+ D++P+ KA +DHL+  + L E+LEL  E
Sbjct: 104 MAQEDRIPVLKASQDHLKEFIALCEVLELIPE 135


>tr|B4FQH3|B4FQH3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 423

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -1

Query: 147 IARRDKLPLKKAQEDHLRRAMCLTEMLELAKE 52
           +A+ D++P+ KA +DHL+  + L E+LEL  E
Sbjct: 104 MAQEDRIPVLKASQDHLKEFIALCEVLELIPE 135


>tr|B6TVR5|B6TVR5_MAIZE PP2A regulatory subunit TAP46 OS=Zea mays
           PE=2 SV=1
          Length = 416

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -1

Query: 147 IARRDKLPLKKAQEDHLRRAMCLTEMLELAKE 52
           IA+ D++P+ K  +DHL+  + L E+LEL  E
Sbjct: 104 IAQEDRIPVLKTSQDHLKEFIALCEVLELIPE 135


>tr|B4FR84|B4FR84_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 416

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -1

Query: 147 IARRDKLPLKKAQEDHLRRAMCLTEMLELAKE 52
           IA+ D++P+ K  +DHL+  + L E+LEL  E
Sbjct: 104 IAQEDRIPVLKTSQDHLKEFIALCEVLELIPE 135


>tr|B6BFD2|B6BFD2_9RHOB Major facilitator superfamily MFS_1
           OS=Rhodobacterales bacterium Y4I GN=RBY4I_4108 PE=4 SV=1
          Length = 437

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 319 AACRPWCHASSYQRSHACWLLLYP 390
           AA RP   A+ +  SHACWLL YP
Sbjct: 338 AADRPAIFAAQFTLSHACWLLFYP 361


>tr|Q84PC7|Q84PC7_ORYSJ PP2A regulatory subunit-like protein
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 418

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 147 IARRDKLPLKKAQEDHLRRAMCLTEMLELAKE 52
           +A+ D++P+ KA +DHL+  + + E LEL  E
Sbjct: 106 VAQEDRIPVLKASQDHLKEFISICEALELISE 137