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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963413
Clone id TST39A01NGRL0016_H13
Library
Length 714
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_H13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTCTAGCTCGTCATCTCCTCCTCGTTCCTCCGGGTCCGCTTGCGCTTTTGTACAAACC
CTCCAATTCAGAAATTATCCTAGTCACGCGAGCCCTTTTTCAACCTCATTGCACGTGAGC
TCCTTCTGCTCTTCCTCAAGGAGTTGCAAGCACGTACGATGCTCACCTCGCTCGATGGCG
CCTGACGAAGAGAAAATGACCAGACGATCACCTCTTGATTTTCCCATTGAATGGGAGAGA
CCCCGACCTGGAAGACGGCCAGATATTTTTCCGCAGTTCAGTCCAATGAAAACTCCACTC
CCTCAGCCTCCTCCAACTGATCCTCCAGAGGAAGATGAAGAGGAAGAGAAAAAAGAAGAA
GAAGAGAAGCCAGAGGAGGAGCCTGATACACCACCTAAAGAAACATGATTCTTACTGGTC
TTCTCAGTAATGGTGTTTTGGGTGAGCTGGGTGGTGTGCTTCAAAGAGGTGACTGATTTT
TTCAAAGCTAACGGGGTGCAAGAATTGCCAAACCTGGTTTCTGCTCTCACACTCTTCATC
AACTTGTAATGTGCTACCCATCCTGAGTTGATTTGCAGTTCAGCCAATATAGTTGGGCGC
AGGTCTTTAACATATGTATTTTTCATTTATAATGGTTGATGACTCCTAGCCACCCATTTA
TGTTGTTTGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id B1J1K3
Definition sp|B1J1K3|TTCA_PSEPW tRNA 2-thiocytidine biosynthesis protein ttcA OS=Pseudomonas putida (strain W619)
Align length 35
Score (bit) 31.6
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963413|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_H13, 5'
         (673 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B1J1K3|TTCA_PSEPW tRNA 2-thiocytidine biosynthesis protein tt...    32   4.0  
sp|Q88MD2|TTCA_PSEPK tRNA 2-thiocytidine biosynthesis protein tt...    32   4.0  
sp|B0KT32|TTCA_PSEPG tRNA 2-thiocytidine biosynthesis protein tt...    32   4.0  
sp|A5W7U0|TTCA_PSEP1 tRNA 2-thiocytidine biosynthesis protein tt...    32   4.0  
sp|Q1IDN2|TTCA_PSEE4 tRNA 2-thiocytidine biosynthesis protein tt...    32   4.0  
sp|Q3IZ05|TRMD_RHOS4 tRNA (guanine-N(1)-)-methyltransferase OS=R...    31   6.8  
sp|Q48FG8|TTCA_PSE14 tRNA 2-thiocytidine biosynthesis protein tt...    30   8.9  

>sp|B1J1K3|TTCA_PSEPW tRNA 2-thiocytidine biosynthesis protein ttcA
           OS=Pseudomonas putida (strain W619) GN=ttcA PE=3 SV=1
          Length = 274

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 PRSMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIF 270
           P ++   +E + R+   D  +EWER  PGR   IF
Sbjct: 202 PCNLCGSQENLQRQVVKDMLVEWERKHPGRTESIF 236


>sp|Q88MD2|TTCA_PSEPK tRNA 2-thiocytidine biosynthesis protein ttcA
           OS=Pseudomonas putida (strain KT2440) GN=ttcA PE=3 SV=1
          Length = 274

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 PRSMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIF 270
           P ++   +E + R+   D  +EWER  PGR   IF
Sbjct: 202 PCNLCGSQENLQRQVVKDMLVEWERKHPGRTESIF 236


>sp|B0KT32|TTCA_PSEPG tRNA 2-thiocytidine biosynthesis protein ttcA
           OS=Pseudomonas putida (strain GB-1) GN=ttcA PE=3 SV=1
          Length = 274

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 PRSMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIF 270
           P ++   +E + R+   D  +EWER  PGR   IF
Sbjct: 202 PCNLCGSQENLQRQVVKDMLVEWERKHPGRTESIF 236


>sp|A5W7U0|TTCA_PSEP1 tRNA 2-thiocytidine biosynthesis protein ttcA
           OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ttcA
           PE=3 SV=1
          Length = 274

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 PRSMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIF 270
           P ++   +E + R+   D  +EWER  PGR   IF
Sbjct: 202 PCNLCGSQENLQRQVVKDMLVEWERKHPGRTESIF 236


>sp|Q1IDN2|TTCA_PSEE4 tRNA 2-thiocytidine biosynthesis protein ttcA
           OS=Pseudomonas entomophila (strain L48) GN=ttcA PE=3
           SV=1
          Length = 274

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 PRSMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIF 270
           P ++   +E + R+   D  +EWER  PGR   IF
Sbjct: 202 PCNLCGSQENLQRQVVKDMLVEWERKHPGRTESIF 236


>sp|Q3IZ05|TRMD_RHOS4 tRNA (guanine-N(1)-)-methyltransferase
           OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
           NCIB 8253 / DSM 158) GN=trmD PE=3 SV=2
          Length = 249

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +2

Query: 131 LPQGVASTYDAHLARWR------LTKRK*PDDHLLIFPLNGRDPDLEDGQI 265
           +P+ + S + A++ARWR      LTK + PD         GRDPD ED ++
Sbjct: 200 IPEVLLSGHHANIARWRRAEAERLTKERRPDLWRAYCAARGRDPD-EDREL 249


>sp|Q48FG8|TTCA_PSE14 tRNA 2-thiocytidine biosynthesis protein ttcA
           OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
           Race 6) GN=ttcA PE=3 SV=1
          Length = 274

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 PRSMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIF 270
           P ++   +E + R+   D  I+WER  PGR   IF
Sbjct: 202 PCNLCGSQENLQRQVVKDMLIDWERKTPGRTESIF 236
tr_hit_id A7P7B9
Definition tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 43
Score (bit) 94.7
E-value 5.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963413|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_H13, 5'
         (673 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome ...    95   5e-18
tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Popul...    94   1e-17
tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella paten...    93   1e-17
tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella paten...    93   1e-17
tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacteriz...    92   2e-17
tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genom...    92   3e-17
tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subs...    90   1e-16
tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza...    90   1e-16
tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea m...    90   1e-16
tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea m...    90   1e-16
tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea m...    90   1e-16
tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea m...    90   1e-16
tr|Q9LV56|Q9LV56_ARATH Gb|AAD25142.1 (Putative uncharacterized p...    90   1e-16
tr|Q8GWM3|Q8GWM3_ARATH Putative uncharacterized protein At3g2450...    89   2e-16
tr|Q8LE64|Q8LE64_ARATH Putative uncharacterized protein OS=Arabi...    87   1e-15
tr|A3A914|A3A914_ORYSJ Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|A8JCL4|A8JCL4_CHLRE Predicted protein OS=Chlamydomonas reinha...    52   3e-05
tr|A4RRA5|A4RRA5_OSTLU Predicted protein OS=Ostreococcus lucimar...    45   0.003
tr|Q6GZT3|Q6GZT3_FRG3V Putative uncharacterized protein OS=Frog ...    37   1.5  

>tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034399001
           PE=4 SV=1
          Length = 84

 Score = 94.7 bits (234), Expect = 5e-18
 Identities = 41/43 (95%), Positives = 43/43 (100%)
 Frame = +1

Query: 175 MAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           MAP+EEKMTRRSPLDFPIEWERP+PGRRPDIFPQFSPMKTPLP
Sbjct: 1   MAPEEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKTPLP 43


>tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 147

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 40/44 (90%), Positives = 43/44 (97%)
 Frame = +1

Query: 172 SMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           SMAPDEEK+TRRSPLDFPIEWERP+PG RPDIFPQFSPMKTP+P
Sbjct: 65  SMAPDEEKLTRRSPLDFPIEWERPKPGSRPDIFPQFSPMKTPIP 108


>tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_56105 PE=4 SV=1
          Length = 78

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 41/43 (95%), Positives = 42/43 (97%)
 Frame = +1

Query: 175 MAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           MAPDEEKMTRRSPLDFPIEW+RPRPGRR DIFPQFSPMKTPLP
Sbjct: 1   MAPDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPLP 43


>tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65594 PE=4 SV=1
          Length = 79

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 41/43 (95%), Positives = 42/43 (97%)
 Frame = +1

Query: 175 MAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           MAPDEEKMTRRSPLDFPIEW+RPRPGRR DIFPQFSPMKTPLP
Sbjct: 1   MAPDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPLP 43


>tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacterized
           protein) (At2g17240/T23A1.10) OS=Arabidopsis thaliana
           GN=At2g17240 PE=2 SV=1
          Length = 140

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 39/44 (88%), Positives = 44/44 (100%)
 Frame = +1

Query: 172 SMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           SMAP+EEK+TRR+PLDFPIEWERP+PGRRPDIFP+FSPMKTPLP
Sbjct: 60  SMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLP 103


>tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016751001
           PE=4 SV=1
          Length = 147

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = +1

Query: 172 SMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           SMAP+EEK+TRR+PLDFPIEW RP+PGRRPDIFPQFSPMKTPLP
Sbjct: 64  SMAPEEEKLTRRNPLDFPIEWNRPKPGRRPDIFPQFSPMKTPLP 107


>tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subsp.
           japonica GN=OJ2055_H10.18 PE=2 SV=1
          Length = 144

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 38/42 (90%), Positives = 42/42 (100%)
 Frame = +1

Query: 178 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           APDEEK+TRRSPLDFPIEWE+P+PGRRPDIFP+FSPMKTPLP
Sbjct: 57  APDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKTPLP 98


>tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08059 PE=4 SV=1
          Length = 144

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 38/42 (90%), Positives = 42/42 (100%)
 Frame = +1

Query: 178 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           APDEEK+TRRSPLDFPIEWE+P+PGRRPDIFP+FSPMKTPLP
Sbjct: 57  APDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKTPLP 98


>tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 38/42 (90%), Positives = 42/42 (100%)
 Frame = +1

Query: 178 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           APDEEK+T+RSPLDFPIEWERP+PGRRPDIFP+FSPMKTPLP
Sbjct: 44  APDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPLP 85


>tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 140

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 38/42 (90%), Positives = 42/42 (100%)
 Frame = +1

Query: 178 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 303
           APDEEK+T+RSPLDFPIEWERP+PGRRPDIFP+FSPMKTPLP
Sbjct: 53  APDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPLP 94