DK963433
Clone id TST39A01NGRL0016_I11
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_I11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATCACAATGGAGGCTTTGGACTCCCTGAGTATAGAGGCAGTAATGGTGTTGATACTGACG
GTGCTTCTCATGTTCATCGTTATGTCCCCGGCGACGTGGTCTTCTTCATCGTCGCAATCC
GCCGCACAGGCATCAGCGGGGGAGGGGGAGCTGCAGTATGAGCATCCGTCCTCCTGCATT
TCGACCGGCCTTGACTACGTCTTCTCCCCTTCGCCCCCCTGCACGCCCTTCTCTTCTCTC
TTTGATGATGAACCCAGTCCTTGTGAGAGTGCTACCCCTCGAGCAGAGCCAGAGCCCGCA
CCTGCGAATGAGTCTACACCTGGCTCCGGCGCAGCACCGCTTGCATTGGCTCTTTGATCT
TCTTTACATCAGGTATTTTCCGACATGCACAGTTCGGTAGTGGCTTTCATTTTTAAGAAG
AGGTAACTATTGAAGGAGAGGTACTGGTCTATGAAGCATGCCCAACAAACGAAATGTTGC
AGAGTTAATTGGCAACTCAGATGTCAATTATGGTCCCCTCCAACCGTTTTAATATAGAGC
ATATGGTCTTGCTTTGCTGTGTATCATATAGATGGACATTTCAGAGGTTGACGAGGGATG
ACATAAT
■■Homology search results ■■ -
sp_hit_id P34943
Definition sp|P34943|NDUA9_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Bos taurus
Align length 33
Score (bit) 31.2
E-value 4.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963433|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_I11, 5'
(607 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P34943|NDUA9_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha su... 31 4.3
sp|P24152|EXTN_SORBI Extensin OS=Sorghum bicolor GN=HRGP PE=3 SV=1 31 5.6
sp|Q9Y7B3|DOP1_EMENI Protein dopey OS=Emericella nidulans GN=dop... 31 5.6
sp|P14918|EXTN_MAIZE Extensin OS=Zea mays GN=HRGP PE=2 SV=1 30 9.6

>sp|P34943|NDUA9_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha
subcomplex subunit 9, mitochondrial OS=Bos taurus
GN=NDUFA9 PE=1 SV=1
Length = 380

Score = 31.2 bits (69), Expect = 4.3
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2

Query: 248 MNPVLVRVLPLEQSQSPHLRMSLHLAPAQHRLH 346
++P +VRVLP+ +S P L S+ +P Q +LH
Sbjct: 5 VHPRVVRVLPMSRSSVPALAASVFHSPPQRQLH 37


>sp|P24152|EXTN_SORBI Extensin OS=Sorghum bicolor GN=HRGP PE=3 SV=1
Length = 283

Score = 30.8 bits (68), Expect = 5.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1

Query: 154 AAPPPPLMPVRRIATMKKTTSPGT*R*T*EAPSVSTPLLPLYSGSPKPPL 5
A+ PP P + K T P T + P+ P P+Y+ SPKPP+
Sbjct: 111 ASTPPTYTPSPKPPATKPPTYP-----TPKPPATKPPTPPVYTPSPKPPV 155


>sp|Q9Y7B3|DOP1_EMENI Protein dopey OS=Emericella nidulans GN=dop1
PE=1 SV=1
Length = 1858

Score = 30.8 bits (68), Expect = 5.6
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1

Query: 148 PPPPLMPV-RRIATMKKTTSPGT*R*T*EAPSVSTPLLPLYSGSPKPP 8
PPPP P +R + +K TSP T + P S+ LLP SP+PP
Sbjct: 1052 PPPPTKPKHQRGGSREKLTSPSLLSFTSDKPEKSSVLLP----SPEPP 1095


>sp|P14918|EXTN_MAIZE Extensin OS=Zea mays GN=HRGP PE=2 SV=1
Length = 267

Score = 30.0 bits (66), Expect = 9.6
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1

Query: 160 HTAAPPPPLMPVRRIATMKKTTSPGT*R*T*EAPSVSTPLLPLYSGSPKPP 8
+T +P PP P + T SP P P P Y+ SPKPP
Sbjct: 164 YTPSPKPPTHPTPKPTPPTYTPSP--------KPPTPKPTPPTYTPSPKPP 206


tr_hit_id Q6QJ26
Definition tr|Q6QJ26|Q6QJ26_ARATH Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana
Align length 52
Score (bit) 36.6
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963433|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_I11, 5'
(607 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6QJ26|Q6QJ26_ARATH Putative uncharacterized protein (Fragmen... 37 1.2
tr|O65530|O65530_ARATH Putative uncharacterized protein F4D11.90... 37 1.2
tr|A2XZY8|A2XZY8_ORYSI Putative uncharacterized protein OS=Oryza... 35 3.4

>tr|Q6QJ26|Q6QJ26_ARATH Putative uncharacterized protein (Fragment)
OS=Arabidopsis thaliana GN=At4g32710 PE=2 SV=1
Length = 236

Score = 36.6 bits (83), Expect = 1.2
Identities = 23/52 (44%), Positives = 28/52 (53%)
Frame = -1

Query: 160 HTAAPPPPLMPVRRIATMKKTTSPGT*R*T*EAPSVSTPLLPLYSGSPKPPL 5
+TA+PPPP P RR K + P + PS +TP LP S PKPPL
Sbjct: 145 NTASPPPPSPPRRRSGP--KPSFPPPINSSPPNPSPNTPSLPETSPPPKPPL 194


>tr|O65530|O65530_ARATH Putative uncharacterized protein F4D11.90
(Putative uncharacterized protein AT4g32710)
OS=Arabidopsis thaliana GN=AT4g32710 PE=4 SV=1
Length = 731

Score = 36.6 bits (83), Expect = 1.2
Identities = 23/52 (44%), Positives = 28/52 (53%)
Frame = -1

Query: 160 HTAAPPPPLMPVRRIATMKKTTSPGT*R*T*EAPSVSTPLLPLYSGSPKPPL 5
+TA+PPPP P RR K + P + PS +TP LP S PKPPL
Sbjct: 152 NTASPPPPSPPRRRSGP--KPSFPPPINSSPPNPSPNTPSLPETSPPPKPPL 201


>tr|A2XZY8|A2XZY8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_18295 PE=4 SV=1
Length = 751

Score = 35.0 bits (79), Expect = 3.4
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1

Query: 148 PPPPLMPVRRIATMKKTTSPGT*R*T*EAPSVSTPLLPLYSGSPKP 11
PPPP P RR T+ TSP T A + + P + SG+P P
Sbjct: 335 PPPPSPPTRRCTTLSSPTSPA----TTTAAAAAAPAAAVGSGAPSP 376