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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963436
Clone id TST39A01NGRL0016_I14
Library
Length 601
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_I14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAGGAAAGAGTGTACACTTTCCTAGAGTGGTGTTGACGCATTCGACCCAGACATCATTTG
CTACCCTTGAAGAAGTGGAAATCGCAGGTTGGAGTGATGTTTTGAGAAAATCATCTCCTA
CTGAAGTTGAACAAAATGAACAGCCTTTGCCCATAGTTGAGGCAGTTCCTAATCCTCAGA
ACACCTCATCTACATTGGAACCTTTAAAGGATGCCTCATCCATGTCTGGAACTTTGAACA
AACCTTTACTGGTAACTACAGTTGAATCCGGTACAGGAGATGCATCATTTTCAGATGCTA
GTCAATCACAGCCTCCAATCACATCACCAGACATTACAATACCTAGTGCTGAAGAGGCAA
TGAATGCTGCAGCTATTGCTACTGGTGCTGCTTCTGAGAGTTCTCAAGAGGCCACGACCT
CTGCAACGGATGCTCTGTCGAGTGATCAGTTCAAATCAGCCAAGGAAGCATATGAAGCCC
TGCTATCTGGGGCAGGGGATGCTACAGAGCAAGGCTCGTCCTCTGATGCTTTATCACGGA
CTTCCCAAACGCTTGCAGATGAATTTTCAGAGACAAAGTCTGCTATTGTGAAGGGATTAA
C
■■Homology search results ■■ -
sp_hit_id Q8VY05
Definition sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana
Align length 67
Score (bit) 35.4
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963436|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_I14, 5'
         (601 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidops...    35   0.22 
sp|Q7UNC3|HIS8_RHOBA Histidinol-phosphate aminotransferase OS=Rh...    35   0.22 
sp|Q9BVV6|K0586_HUMAN Uncharacterized protein KIAA0586 OS=Homo s...    32   3.2  
sp|Q0JGS5|PLA2_ORYSJ Protein terminal ear1 homolog OS=Oryza sati...    31   4.2  
sp|A2WY46|PLA2_ORYSI Protein terminal ear1 homolog OS=Oryza sati...    31   4.2  
sp|P46876|CHI1_CANAL Chitinase 1 OS=Candida albicans GN=CHT1 PE=...    31   4.2  
sp|A1JMA3|FTHS_YERE8 Formate--tetrahydrofolate ligase OS=Yersini...    30   7.1  
sp|P81067|IRX3_MOUSE Iroquois-class homeodomain protein IRX-3 OS...    30   9.3  

>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis
           thaliana GN=SWI3D PE=1 SV=3
          Length = 985

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +3

Query: 105 RKSSPTEVEQNEQPLPIVEAVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGTGDA 284
           R S P   + +E+P+ I+    +  +     EPLKD + +S   NK    +TV     DA
Sbjct: 679 RSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSE-NKDASQSTVSQSAADA 737

Query: 285 SFSDASQ 305
           S  +AS+
Sbjct: 738 SQPEASR 744


>sp|Q7UNC3|HIS8_RHOBA Histidinol-phosphate aminotransferase
           OS=Rhodopirellula baltica GN=hisC PE=3 SV=1
          Length = 362

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +3

Query: 33  LTHSTQTSFATLEEVEIAGWSDVLRKSS---PTEVEQNEQPLPIVEAVPNPQNTSSTLEP 203
           L + +   + TL +++ A W  V        P    +N + L +V  +PNP + S T+  
Sbjct: 105 LPYPSYILYRTLADIQGANWEQVPFNDPWELPQSFGENREDLKLV-LLPNPNSPSGTIVS 163

Query: 204 LKDASSMSGTLNKPLLVTTVESGTGDASFSDASQS 308
               + +S +LN PL+V    +   + +  D  QS
Sbjct: 164 KPQIAELSNSLNCPLVVDEAYADFAEENCLDLVQS 198


>sp|Q9BVV6|K0586_HUMAN Uncharacterized protein KIAA0586 OS=Homo
           sapiens GN=KIAA0586 PE=1 SV=2
          Length = 1533

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 301 LASENDASPVPDSTVVTSKGLFKVPDMDEASFKGSNVDEV 182
           L+S  +ASP P  T + +  + KV D +E  F G+N DE+
Sbjct: 820 LSSPKEASPPPVQTWIKTPEIMKV-DEEEVKFPGTNFDEI 858


>sp|Q0JGS5|PLA2_ORYSJ Protein terminal ear1 homolog OS=Oryza sativa
           subsp. japonica GN=PLA2 PE=2 SV=1
          Length = 683

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 111 SSPTEVEQNEQPLPIVEAVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGTGDASF 290
           S P + +   +P+P+V   P P + S    P K  ++    L + L+     SG G +S 
Sbjct: 587 SPPRDGKLLTEPVPLVGRSPAPSSASGASSPPKSCAASVDPLAQELMTAPSSSGDGASSA 646

Query: 291 SDAS 302
           S ++
Sbjct: 647 SSSN 650


>sp|A2WY46|PLA2_ORYSI Protein terminal ear1 homolog OS=Oryza sativa
           subsp. indica GN=PLA2 PE=2 SV=1
          Length = 680

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 111 SSPTEVEQNEQPLPIVEAVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGTGDASF 290
           S P + +   +P+P+V   P P + S    P K  ++    L + L+     SG G +S 
Sbjct: 584 SPPRDGKLLTEPVPLVGRSPAPSSASGASSPPKSCAASVDPLAQQLMTAPSSSGDGASSA 643

Query: 291 SDAS 302
           S ++
Sbjct: 644 SSSN 647


>sp|P46876|CHI1_CANAL Chitinase 1 OS=Candida albicans GN=CHT1 PE=3
           SV=2
          Length = 462

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 78  EIAGWSDVLRKSSPTEVEQNEQPLPIVEAVPNPQNTSSTLEPLKDASSMS 227
           ++  W D L  SS + V+Q   P+  V A P P   ++T  P   AS+ +
Sbjct: 339 DLLAWIDSLFGSSQSSVQQYATPVQSVTATPQPVAATTTSAPKPTASAFN 388


>sp|A1JMA3|FTHS_YERE8 Formate--tetrahydrofolate ligase OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=fhs PE=3 SV=2
          Length = 585

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 24  RVVLTHSTQTSFATLEEVEIAGWSDVLRKSS--PTEVEQNEQPLPIVEAVP 170
           R++L HST     T +++ +AG    L K +  PT ++ +EQ   ++ A P
Sbjct: 243 RIILAHSTSGQAITADDLGVAGAMTALMKETIHPTLMQTSEQTPVLIHAGP 293


>sp|P81067|IRX3_MOUSE Iroquois-class homeodomain protein IRX-3
           OS=Mus musculus GN=Irx3 PE=2 SV=1
          Length = 507

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 144 PLPIVEAVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGT 275
           P P+  A  +P +  S+L+P   A + S  L KP + +  E+ T
Sbjct: 317 PPPVARAPASPPSPPSSLDPCAPAPAPSSALQKPKIWSLAETAT 360
tr_hit_id Q7SH12
Definition tr|Q7SH12|Q7SH12_NEUCR Putative uncharacterized protein OS=Neurospora crassa
Align length 58
Score (bit) 37.0
E-value 0.87
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963436|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_I14, 5'
         (601 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7SH12|Q7SH12_NEUCR Putative uncharacterized protein OS=Neuro...    37   0.87 
tr|Q6MVP5|Q6MVP5_NEUCR Putative uncharacterized protein B16D18.1...    37   0.87 
tr|Q5ZLY3|Q5ZLY3_CHICK Putative uncharacterized protein OS=Gallu...    37   1.1  
tr|B4MLT9|B4MLT9_DROWI GK17390 OS=Drosophila willistoni GN=GK173...    35   3.4  
tr|Q28LC2|Q28LC2_JANSC Putative uncharacterized protein OS=Janna...    34   7.4  
tr|B4FVF6|B4FVF6_MAIZE Putative uncharacterized protein OS=Zea m...    34   7.4  
tr|A6GM84|A6GM84_9BURK ABC transporter related protein OS=Limnob...    33   9.6  
tr|A0YWW2|A0YWW2_9CYAN Putative uncharacterized protein OS=Lyngb...    33   9.6  
tr|Q95WU3|Q95WU3_GIALA RNA-dependent RNA-polymerase OS=Giardia l...    33   9.6  
tr|Q8MX71|Q8MX71_GIALA RNA dependent RNA polymerase OS=Giardia l...    33   9.6  
tr|A8B3P5|A8B3P5_GIALA RNA-directed RNA polymerase, putative OS=...    33   9.6  
tr|Q2GMI1|Q2GMI1_CHAGB Putative uncharacterized protein OS=Chaet...    33   9.6  
tr|B2ANU8|B2ANU8_PODAN Predicted CDS Pa_7_1390 OS=Podospora anse...    33   9.6  

>tr|Q7SH12|Q7SH12_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU02957 PE=4 SV=2
          Length = 480

 Score = 37.0 bits (84), Expect = 0.87
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 135 NEQPLPIVEAVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGTGDASFSDASQS 308
           N QP PI +  P+P NTS+   P    SS+S  ++   +V+    G+ D    D  QS
Sbjct: 49  NFQPSPIDKTSPSPTNTSNLQPPQSHLSSVSSNMSVASMVSPTTPGSADPKRFDRPQS 106


>tr|Q6MVP5|Q6MVP5_NEUCR Putative uncharacterized protein B16D18.110
           OS=Neurospora crassa GN=B16D18.110 PE=4 SV=1
          Length = 482

 Score = 37.0 bits (84), Expect = 0.87
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 135 NEQPLPIVEAVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGTGDASFSDASQS 308
           N QP PI +  P+P NTS+   P    SS+S  ++   +V+    G+ D    D  QS
Sbjct: 51  NFQPSPIDKTSPSPTNTSNLQPPQSHLSSVSSNMSVASMVSPTTPGSADPKRFDRPQS 108


>tr|Q5ZLY3|Q5ZLY3_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_4g21 PE=2 SV=1
          Length = 352

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 78  EIAGWSDVLRKSSPTEVEQNEQPLPIVEAVPNPQNTSSTLEPLKDASS 221
           +I G S+ + K S + + + E+ LP+ +  PNP N   TL+ +KD  S
Sbjct: 151 DIVGSSNGVGKDSFSNIVKGEKMLPVFDEPPNPTNVEETLQRIKDNDS 198


>tr|B4MLT9|B4MLT9_DROWI GK17390 OS=Drosophila willistoni GN=GK17390
            PE=4 SV=1
          Length = 1528

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
 Frame = -1

Query: 301  LASENDASPVPDSTVVTSKGLFKVPDMDEASFKGSNVDEVF*GL----------GTASTM 152
            L   + AS  P +T  T+ G    P  D  S   + + E+F  +           TAST 
Sbjct: 746  LTGASGASAAPTATATTTAGASPAPPNDIQSRTAARIGELFANVLPAPNANAASTTASTN 805

Query: 151  GKGCSFCSTSVGDDFLKTSLQPAISTSSR 65
              G    STS G D   T+  P  +T +R
Sbjct: 806  TAGAGAASTSTGRDQRATNTLPTTATQTR 834


>tr|Q28LC2|Q28LC2_JANSC Putative uncharacterized protein
           OS=Jannaschia sp. (strain CCS1) GN=Jann_3573 PE=4 SV=1
          Length = 3486

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +3

Query: 45  TQTSFATLEEVEIAGWSDVLRKSSPTEVEQNEQPLPIVEAVPNPQNTSSTLEPLKDASSM 224
           T T   T+E+ +I G   ++  +  T  E    P     +VP  Q+ S T       +S 
Sbjct: 432 TYTISYTVEQADIDGGGPLVNSAVVTTTETGTTPEADTASVPVTQDDSFTFTKTAGVASF 491

Query: 225 SGTLNKPLLVTTVESGTGDASFSD 296
           S  +N P++ T     TG+ + +D
Sbjct: 492 S-AVNDPIVFTLTVENTGNVTLTD 514


>tr|B4FVF6|B4FVF6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 381

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 16/54 (29%)
 Frame = +3

Query: 21  PRVVLTHSTQTSFAT----------------LEEVEIAGWSDVLRKSSPTEVEQ 134
           P  V+T +T TSF +                +EEV  AGW D+++ SSPT   Q
Sbjct: 22  PAAVMTFTTPTSFPSPGLCLNTTKKIPLPGKIEEVRAAGWLDLMKASSPTRKRQ 75


>tr|A6GM84|A6GM84_9BURK ABC transporter related protein
           OS=Limnobacter sp. MED105 GN=LMED105_06182 PE=3 SV=1
          Length = 262

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 27  VVLTHSTQTSFATLEEVEIAGWSDVLRKSSPTEVEQNEQP 146
           VV+TH    SFA  + V +     VL + +P EVE N+ P
Sbjct: 195 VVVTHDIHESFAISDHVIVIANGKVLAQGTPAEVEANQDP 234


>tr|A0YWW2|A0YWW2_9CYAN Putative uncharacterized protein OS=Lyngbya
           sp. PCC 8106 GN=L8106_03242 PE=4 SV=1
          Length = 372

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +3

Query: 9   SVHFPRVVLTHSTQTSFATLEEVEIAGWSDV---LRKSSPTEVEQNEQPLPIVEAVPNPQ 179
           ++H P     HS Q S A   +V+   W+ +     K   +++    QP  ++    NPQ
Sbjct: 206 TIHTPE---NHSIQPSSANFHQVQAVIWAAIDYFFFKDYNSQLHSESQPENVLSG--NPQ 260

Query: 180 NTSSTLEPLKDASSMSGTLNKPLLVTT 260
           N   T +P K  + +     +PL  T+
Sbjct: 261 NQQLTPQPQKSQAPILANSRRPLAATS 287


>tr|Q95WU3|Q95WU3_GIALA RNA-dependent RNA-polymerase OS=Giardia
           lamblia PE=4 SV=1
          Length = 1377

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 162 AVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGTGDASF 290
           ++PNP  T  TLE L+ A    G +N  ++V   E G  D  F
Sbjct: 409 SIPNPTETQQTLEILRVAQRSKGMINMQIIVLLSEMGVPDDVF 451


>tr|Q8MX71|Q8MX71_GIALA RNA dependent RNA polymerase OS=Giardia
           lamblia PE=2 SV=1
          Length = 2001

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 162 AVPNPQNTSSTLEPLKDASSMSGTLNKPLLVTTVESGTGDASF 290
           ++PNP  T  TLE L+ A    G +N  ++V   E G  D  F
Sbjct: 577 SIPNPTETQQTLEILRVAQPSKGMINMQIIVLLSEMGVPDDVF 619