DK963463 |
Clone id |
TST39A01NGRL0016_J18 |
Library |
TST39 |
Length |
673 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_J18. 5' end sequence. |
Accession |
DK963463 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL128Contig1 |
Sequence |
CTAATCCCCAGCCTTCCTGCGTGTTTGCAAGCTATGGAAGGTGTAGTGAGCGTGAGGGCG GCCACACCCACAGCCCTCTGTGTAGCTACAACGCCGTCCCCTGCGTCGTCTTCGCGCTCG TTGTCATACCGCCTCCCCGCCATCAGAGGATCCCTTAAGCATCAGGGATGCAACACATCT AGCAGCTCCTCGCTTCAGGAGAGCCTACAGCGCATGGCTACCAAGATCACTCAAAACCCT ACCCTTCGCAATGCTGCTTTCTTTGCGATGAATGCCCTCTGGGCAGTGCCAGCCATAGCT GCAGAAGTCGCAGCAGAGGCAGAAGAGAAGGGAAAGATTTTCGATTTTAATCTCACCCTC CCCATTATCGCGGCAGAGTTCCTGTTGCTCATGGTGACTTTGGACAACATATGGTTTAAG CCTGTGGCCAAGGTTATGGATGACAGAGATGAAGCCATCAGGCAGAAGCTTATGAGTGTG CGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGCTGAGGCGATCCTCAAGGCC GCACGTGCAGAGACCACGGCGGAGCTCAACAAGATGAAGAGGGAGACGGCAGCAAAGCTT GATGCCAAGCTTCAGGAATCACGCGAAAGAATAGAGAAAGAGCTTGCAGAAGCTATTGCA AACCTAGAGGTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
114 |
Score (bit) |
130.0 |
E-value |
5.0e-30 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963463|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0016_J18, 5' (673 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 130 5e-30 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 74 9e-13 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 73 1e-12 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 69 2e-11 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 68 4e-11 sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 68 5e-11 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 67 7e-11 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 65 3e-10 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 65 4e-10 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 64 6e-10 sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 63 1e-09 sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 60 8e-09 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 59 2e-08 sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 57 7e-08 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 50 8e-06 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 48 5e-05 sp|P41172|ATPF_THIFE ATP synthase B chain OS=Thiobacillus ferroo... 43 0.002 sp|O29104|VATE_ARCFU V-type ATP synthase subunit E OS=Archaeoglo... 40 0.015 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 40 0.015 sp|Q7A0C4|ATPF_STAAW ATP synthase B chain OS=Staphylococcus aure... 40 0.015 sp|Q6G7K3|ATPF_STAAS ATP synthase B chain OS=Staphylococcus aure... 40 0.015 sp|Q6GEW8|ATPF_STAAR ATP synthase B chain OS=Staphylococcus aure... 40 0.015 sp|Q7A4E7|ATPF_STAAN ATP synthase B chain OS=Staphylococcus aure... 40 0.015 sp|Q99SF1|ATPF_STAAM ATP synthase B chain OS=Staphylococcus aure... 40 0.015 sp|Q5HE93|ATPF_STAAC ATP synthase B chain OS=Staphylococcus aure... 40 0.015 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 39 0.019 sp|Q48329|VATE_HALVO V-type ATP synthase subunit E OS=Halobacter... 39 0.025 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 39 0.025 sp|A7GTL0|SYFA_BACCN Phenylalanyl-tRNA synthetase alpha chain OS... 39 0.033 sp|Q15149|PLEC1_HUMAN Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3 38 0.043
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 130 bits (328), Expect = 5e-30 Identities = 63/114 (55%), Positives = 87/114 (76%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 K +FDFNLTLPII AEFL LM LD I++ P+ MD RD +I+++L V+D S E+K+ Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLE 669 L+EQA A+++AARAE +A LNKMK+ET +++AKL E R++IE EL EA+ +LE Sbjct: 140 LEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLE 193
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 73.6 bits (179), Expect = 9e-13 Identities = 37/115 (32%), Positives = 69/115 (60%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDFN TLP++A +FL+LM+ L+ I++KPV K++D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADE 72
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEV 672 L + E L AR + A++ +++ + + +++++ EK + EA L + Sbjct: 73 LAAKYEEDLSKARRDAQAKIAASQKDAQSIVSEDIKKAQMNAEKLITEASKQLNI 127
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 73.2 bits (178), Expect = 1e-12 Identities = 41/115 (35%), Positives = 66/115 (57%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDFN TLP++A +FL LMV L+ I++KPV KV+D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADE 72
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEV 672 L + E L AR ++ ++E + +++++ EK +AEA L V Sbjct: 73 LAAKYEEDLSEARRNAQLKIASSQKEAQNIVSEDIKKAQLNAEKLIAEASKQLNV 127
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 68.9 bits (167), Expect = 2e-11 Identities = 34/111 (30%), Positives = 64/111 (57%) Frame = +1
Query: 337 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQE 516 +FDF+ TLP++A +FL+L V L+ + +KP+ + +D+RDE IR L ++ + +L Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAN 81
Query: 517 QAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLE 669 Q E L R E A + + + E A++ +++ ++ EL +A A ++ Sbjct: 82 QYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQAEID 132
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 68.2 bits (165), Expect = 4e-11 Identities = 36/113 (31%), Positives = 67/113 (59%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDFN TLP++A + LL MV L+ +++ PVAKV+D+R+E IR+ L D + + Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASDILAKAEA 77
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANL 666 + +Q E L R E ++ ++E + +++++++ E + EA + L Sbjct: 78 ITKQYEKDLAQERREAQLIISVAQKEAQDIVALEIKQAQKDTELLVNEATSQL 130
>sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (strain PCC 7120) GN=atpG PE=3 SV=1 Length = 163
Score = 67.8 bits (164), Expect = 5e-11 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FD + TLP++A +FLLL + L+ +KP+ K +D R+E +R + ++ + +K Sbjct: 16 EGGLFDLDATLPLMAIQFLLLALILNATLYKPLGKAIDGRNEYVRNNQLEAQERLSKAEK 75
Query: 508 LQEQAEAILKAAR-------AETTAELNKMKRETAAKLDAKLQESRER----IEKELAEA 654 L E E L AR A+ AE K+ E A + Q RE+ IE++ +A Sbjct: 76 LAEAYEQELAGARRQAQTIIADAQAEAQKIAAEKVAAAQKEAQAQREQAAGEIEQQKQQA 135
Query: 655 IANLE 669 +A+LE Sbjct: 136 LASLE 140
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 67.4 bits (163), Expect = 7e-11 Identities = 34/115 (29%), Positives = 64/115 (55%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDF+ TLP++ + L+LM+ L+ +++KP+ K++D+R E I+ + + Sbjct: 18 EGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNEAEKCLAQAAE 77
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEV 672 L Q E + AR + N + E + KL+E++++ + ELA A LE+ Sbjct: 78 LTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASATNKLEL 132
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 65.1 bits (157), Expect = 3e-10 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 7/113 (6%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKA 75
Query: 508 LQEQAEAILKAAR-------AETTAELNKMKRETAAKLDAKLQESRERIEKEL 645 L Q E L A R AE E ++ + A+ + Q RE+ ++E+ Sbjct: 76 LTAQYEQELAATRKQSQALIAEAQTEAGRIAAQQLAEAQREAQAQREQAQQEI 128
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 64.7 bits (156), Expect = 4e-10 Identities = 32/112 (28%), Positives = 69/112 (61%) Frame = +1
Query: 331 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 510 G +FDF+ TLP++A++FLL+M+ LD ++KP+ KV+ DR+ I + L S S++ K+ Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKET 74
Query: 511 QEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANL 666 + E ++ ++ E+ ++ +K +T + +L +++ + ++++I L Sbjct: 75 LARYEEVILKSKKESQQLIDSIKTKTEHDIVNELIQTQNSTREFISKSIKEL 126
>sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Antithamnion sp. GN=atpG PE=3 SV=1 Length = 159
Score = 64.3 bits (155), Expect = 6e-10 Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 11/125 (8%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVR---DNSDE 498 +G +FDFN TLP++A +FL L + L+ I++KP+ K++D+RDE I L + +++ Sbjct: 18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSLTAASAALSKAND 77
Query: 499 IKKLQEQ--------AEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEA 654 + K EQ A+ I+K A+ + ++ +E D + + +++ + +A Sbjct: 78 LTKRYEQDLAESRKKAQDIIKNAQQDAQNIVSSKIKEAQKDADQLMSNTYDQLNIQKEQA 137
Query: 655 IANLE 669 + NLE Sbjct: 138 LQNLE 142
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
142 |
Score (bit) |
179.0 |
E-value |
1.0e-43 |
Report |
 |