NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963484
Clone id TST39A01NGRL0016_K16
Library
Length 669
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_K16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCTTCTTTTCCTCTCCTCTCTCCCTTGCTCCCTCATCTCCCTAGCTATGTCTATACGAG
AAGCTATCCGCTTCCGCCGCGCTTCCGCGCCAAAGCCCAACAATTGGTATCAGAGCTTTG
GGGCAAGGTCTTGTAGGTATTCATGAGTTGAGGTATGAAGATGGGCTGCCAAAGAAGTGG
GGTTGGTCTGTGCCATACCAGATGCTGCTAGAGCAAAGGGACTTCTTGGGAGCCATCATC
AGCATGCACGGCTTCGACCTTCCAGGAGATCTCATTCATGGCTTCAGCTATTGTCCGCTG
AATGTTGCAGCGAGAAGGCCGTTGCAATAGTGCTCGCCAGTGGTGCTCTCCTATCTTCCC
CTCGATAATATAGCCTCAGTCGAGAGCTCGACAGGCCAAAGGCTCATGAGAAGACAAGCC
TCAAAGGGGCATAGCCAGCCTTGAGACGAGGGCAACAGCCCGGGGGCTGAGCAGACGAAA
CTAGAGATGGCGAATTGGAGGCATGAGGCTCATGCCCGGATCCAGTGATAGAGAGGGGCA
GCAGCAGCACGCGATGAAAGAGGGCTTTGAGAGCACTGCAGAGGGGCGAGTGGTGGCCAG
CACGGGTCACCATGCTGGTGAGCGTGACGGACAGGCCGAAGGAAACTGAGCTCGCAGGCG
GCCCACCTC
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 67
Score (bit) 52.0
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963484|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_K16, 5'
         (669 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...    52   3e-06
sp|Q8YPK5|TRUA_ANASP tRNA pseudouridine synthase A OS=Anabaena s...    33   1.4  
sp|Q8TAT2|FGFP3_HUMAN Fibroblast growth factor-binding protein 3...    32   3.0  
sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo s...    31   5.2  
sp|P44647|PRIA_HAEIN Primosomal protein N' OS=Haemophilus influe...    31   6.8  
sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast...    31   6.8  
sp|Q62232|SIX2_MOUSE Homeobox protein SIX2 OS=Mus musculus GN=Si...    30   8.9  

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
           F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
           SV=1
          Length = 265

 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
 Frame = -2

Query: 314 LAATFSGQ*LKP*---MRSPGRSKPCMLMMAPKKSLCSSSIWYGTDQP----HFFGSPSS 156
           L +TFSGQ LKP     R  G  +  + MMAPK    S SIWYG+D+P     F GSP S
Sbjct: 8   LTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPS 67

Query: 155 YLNS*IP 135
           YL+   P
Sbjct: 68  YLSGEFP 74


>sp|Q8YPK5|TRUA_ANASP tRNA pseudouridine synthase A OS=Anabaena sp.
           (strain PCC 7120) GN=truA PE=3 SV=1
          Length = 282

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 207 ARAKGLLGSHHQHARLRP-SRRSHSWLQLLSAEC 305
           A  K L+G HH  A  R  S+RSHSW+++ + EC
Sbjct: 152 AALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVEC 185


>sp|Q8TAT2|FGFP3_HUMAN Fibroblast growth factor-binding protein 3
           OS=Homo sapiens GN=FGFBP3 PE=1 SV=1
          Length = 258

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 165 AAKEVGLVCAIPDAARAKGLLGSHHQHARLRPSRRSHSWLQLL 293
           A  E+ L C  PD AR +     H +      +RR+H W Q+L
Sbjct: 72  AGSELALRCQSPDGARHQCAYRGHPERCAAYAARRAHFWKQVL 114


>sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo
           sapiens GN=C9orf131 PE=2 SV=3
          Length = 1079

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -2

Query: 260 RSKPCMLMMAPKKSLCSSSIWYGTDQPHFFGSPSSYLNS*IPTRPCP 120
           R  P      P +S CSS I   T  P F+G PS       P  PCP
Sbjct: 795 RQSPASRAPGPSQSFCSSPILSSTI-PDFWGLPSCPPQQIYPPNPCP 840


>sp|P44647|PRIA_HAEIN Primosomal protein N' OS=Haemophilus
           influenzae GN=priA PE=3 SV=1
          Length = 730

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 357 KIGEHHWRALLQRPSRCNIQRTIAE 283
           K G++ W+ LLQ PSR  +Q+ + E
Sbjct: 682 KAGQYRWQLLLQHPSRMTLQKALRE 706


>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic
           OS=Physcomitrella patens PE=3 SV=1
          Length = 269

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -2

Query: 224 KSLCSSSIWYGTDQPHFFGSPS----SYLN 147
           KS  S +IWYG D+P F G  S    SYLN
Sbjct: 44  KSAGSDTIWYGADRPKFLGPFSGETPSYLN 73


>sp|Q62232|SIX2_MOUSE Homeobox protein SIX2 OS=Mus musculus GN=Six2
           PE=1 SV=2
          Length = 296

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 607 TRAGHHSPLCSALKALFHRVL-LLPLSITGSGHEPHASNSPSLVSSAQPPGCCPRLKA-G 434
           + +  H+PL S+L      VL       T SG   H+S+SP+L+ S  PP   P L + G
Sbjct: 193 SNSSSHNPLASSLNGSGKSVLGSSEDEKTPSGTPDHSSSSPALLLSPPPPPGLPSLHSLG 252

Query: 433 YAP 425
           + P
Sbjct: 253 HPP 255
tr_hit_id Q5CCK8
Definition tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiantum capillus-veneris
Align length 68
Score (bit) 40.4
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963484|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_K16, 5'
         (669 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiant...    40   0.10 
tr|Q6H000|Q6H000_FREDI Pseudouridylate synthase OS=Fremyella dip...    37   1.1  
tr|B2ITM9|B2ITM9_NOSP7 tRNA pseudouridine synthase A OS=Nostoc p...    37   1.5  
tr|A2ZCU1|A2ZCU1_ORYSI Putative uncharacterized protein OS=Oryza...    36   2.5  
tr|B1TYH1|B1TYH1_MICLU LigA OS=Micrococcus luteus NCTC 2665 GN=M...    35   4.2  
tr|A0ZG49|A0ZG49_NODSP Pseudouridylate synthase OS=Nodularia spu...    34   7.2  
tr|Q7XX28|Q7XX28_ORYSJ OSJNBa0060B20.19 protein OS=Oryza sativa ...    34   7.3  
tr|Q0JEQ9|Q0JEQ9_ORYSJ Os04g0219600 protein OS=Oryza sativa subs...    34   7.3  
tr|A3AR73|A3AR73_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.3  
tr|B6KPE1|B6KPE1_TOXGO Putative uncharacterized protein OS=Toxop...    34   9.4  
tr|Q8LKA5|Q8LKA5_ORYSJ NBS-LRR protein (Fragment) OS=Oryza sativ...    34   9.5  

>tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiantum
           capillus-veneris GN=AcCab1 PE=4 SV=1
          Length = 215

 Score = 40.4 bits (93), Expect = 0.10
 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
 Frame = -2

Query: 317 LLAATFSGQ*LKP*---MRSPGRSKPCMLMMAPKKSLCSSSIWYGTDQ----PHFFGSPS 159
           L ++ FSGQ LKP     R  G S+  + MMAPKKS  S +I YG D+      F GSP 
Sbjct: 15  LSSSVFSGQQLKPVNELSRKVGTSEARVQMMAPKKS-SSGNIRYGADRLLYLGPFSGSPP 73

Query: 158 SYLNS*IP 135
           SYL    P
Sbjct: 74  SYLTGEFP 81


>tr|Q6H000|Q6H000_FREDI Pseudouridylate synthase OS=Fremyella
           diplosiphon PE=3 SV=1
          Length = 268

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
 Frame = +3

Query: 78  RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224
           RASA   N W+  F A   RY             V    W      L  ++  AA  K L
Sbjct: 85  RASAGVGNRWHARFSAAYRRYRYTIYTEDQPNLFVRPFSWHYYYAPLDESLIKAA-LKPL 143

Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305
           LG HH  A  R  S+RSHSW+++ +AEC
Sbjct: 144 LGKHHLAAFHRAGSKRSHSWVEVQAAEC 171


>tr|B2ITM9|B2ITM9_NOSP7 tRNA pseudouridine synthase A OS=Nostoc
           punctiforme (strain ATCC 29133 / PCC 73102)
           GN=Npun_R4364 PE=4 SV=1
          Length = 282

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
 Frame = +3

Query: 78  RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224
           RASA   N W+  F A   RY             V    W      L  ++  AA  K L
Sbjct: 99  RASASVDNRWHARFSAAYRRYRYTIYTEDRLNLFVRPFSWHYYYAPLDESLIQAA-LKPL 157

Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305
           LG HH  A  R  S+RSHSW+++ + EC
Sbjct: 158 LGKHHLAAFHRAGSKRSHSWVEVQAVEC 185


>tr|A2ZCU1|A2ZCU1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35606 PE=4 SV=1
          Length = 788

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
           P ++ WS  Y  L   + + D + AI+++   D+PGDL + F YC +
Sbjct: 387 PTEYAWSQAYDQLRNEMSKNDHIRAILNLSYHDMPGDLRNCFLYCSM 433


>tr|B1TYH1|B1TYH1_MICLU LigA OS=Micrococcus luteus NCTC 2665
           GN=MlutDRAFT_1429 PE=4 SV=1
          Length = 795

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +2

Query: 416 KPQRGIASLETRATARGLSR-RN*RWR-IGGMRLMPGSSDREGQQQHAMKEGFESTAEGR 589
           +P RG+  L  R   RG  R    R R +G +R  PG   R G      + G    A   
Sbjct: 533 RPVRGVPGLRRRRGGRGHGRVGGHRVRGLGPLRRTPGRRARRGDGLRVPRGG-RHPAGRH 591

Query: 590 VVASTGHHAGERDGQAEGN*ARRRP 664
            +A  GHH G R G A    AR+ P
Sbjct: 592 ELAHRGHHRGPRPGAARLRAARQAP 616


>tr|A0ZG49|A0ZG49_NODSP Pseudouridylate synthase OS=Nodularia
           spumigena CCY 9414 GN=truA PE=3 SV=1
          Length = 296

 Score = 34.3 bits (77), Expect = 7.2
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
 Frame = +3

Query: 78  RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224
           +ASA   N W+  F A   RY             V    W      L   +  AA  + L
Sbjct: 100 KASAAVDNRWHARFSAAYRRYRYTIYTEERPNLFVRPFSWHYYYAPLDECLIQAA-LEPL 158

Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305
           +G HH  A  R  S+RSHSW+++ +AEC
Sbjct: 159 MGKHHLAAFHRAGSKRSHSWVEVQAAEC 186


>tr|Q7XX28|Q7XX28_ORYSJ OSJNBa0060B20.19 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0060B20.19 PE=4 SV=1
          Length = 962

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
           P +  W   Y  L   L + D + AI+++  +DLPGDL + F YC +
Sbjct: 387 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 433


>tr|Q0JEQ9|Q0JEQ9_ORYSJ Os04g0219600 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0219600 PE=2 SV=1
          Length = 701

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
           P +  W   Y  L   L + D + AI+++  +DLPGDL + F YC +
Sbjct: 387 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 433


>tr|A3AR73|A3AR73_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_013295 PE=4 SV=1
          Length = 853

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
           P +  W   Y  L   L + D + AI+++  +DLPGDL + F YC +
Sbjct: 317 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 363


>tr|B6KPE1|B6KPE1_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_009650 PE=4 SV=1
          Length = 2587

 Score = 33.9 bits (76), Expect = 9.4
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 488 WRIGGMRLMPGSSDREGQQQHAMKEGFESTAEGRVVAS-TGHHAGERDGQAEGN*ARRR 661
           W + G     GS D  G  Q A + G   T E R  A  TG   GE DG+  G   R+R
Sbjct: 37  WAVAG-----GSGDAVGDLQAAARTGRRETEERRPEAGETGRQQGEEDGERAGKQLRKR 90