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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963529
Clone id TST39A01NGRL0016_M13
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_M13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTTCCCCCCCATACAAGGTATGTAGCGAAGCCATTGGAAACTTGTAGCGTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACAGGCACACATACC
CAAGGAAATGAGTAAAGAACGACGTTGGGAGAAGCAGATCGAGCATGACGAGCATCTGCT
ACACAAGAATATAGAAAGAAAGGAGCAGCAGCAACGTCGACAAGGACATTATTTCGCAGA
GCTTCCGGCCATAAACATGACATATACACGCACCACCAGCTGCAGGAACTCCATGTTGCA
GGACTCAGCTTTCGCCCGTGATCAGCATACTCATGTCTCCAGCCTCAAAGCCAGCAACCT
TTTGCAGATTCTACGGAGATGGAGAGCGCAAAGCCTGAAGCAAACCACCCTCAGTGGCGC
GTCCATGGCGTCGCGCAGATCTGCTGCCCGCTCGCACTCCTGCTTAAGTTTGGGGCTCAC
CTTAGCGCCATTGAGGTGCTTAAGCATGCAATTGCATTCTGATGATGAAGATGAAGGACA
AAATGGAGCCAAACTTTTAACAGCGCCAAGCCGTGGAAGCCCGAGGCAAATTTGCGGCTC
TAGGGGCCAGGGTAGTACTCT
■■Homology search results ■■ -
sp_hit_id Q86U86
Definition sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens
Align length 66
Score (bit) 35.8
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963529|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_M13, 5'
         (621 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1...    36   0.18 
sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM...    35   0.31 
sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1...    33   1.2  
sp|Q6NS45|CCD66_MOUSE Coiled-coil domain-containing protein 66 O...    33   1.6  
sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase...    32   2.0  
sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120 OS=Arabidopsi...    32   2.0  
sp|A2RUB6|CCD66_HUMAN Coiled-coil domain-containing protein 66 O...    32   3.5  
sp|Q04791|SASB_ANAPL Fatty acyl-CoA hydrolase precursor, medium ...    30   7.7  
sp|Q6BSZ4|PACC_DEBHA pH-response transcription factor pacC/RIM10...    30   7.7  
sp|Q8MY86|FGFR1_DUGJA Fibroblast growth factor receptor 1 OS=Dug...    30   7.7  

>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1
            SV=1
          Length = 1689

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 18/66 (27%), Positives = 36/66 (54%)
 Frame = +2

Query: 98   THTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 277
            ++T  H+  ++ KER+ +   E +E  L +  E++E ++       A L  ++ TY++  
Sbjct: 892  SYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDC 951

Query: 278  SCRNSM 295
            S +NSM
Sbjct: 952  SFKNSM 957


>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1
            PE=1 SV=1
          Length = 1633

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 17/66 (25%), Positives = 37/66 (56%)
 Frame = +2

Query: 98   THTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 277
            ++T  H+  ++ KE++ +   E +E  L +  E++E ++       A L +++ TY++  
Sbjct: 890  SYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGSAGLSSLHRTYSQDC 949

Query: 278  SCRNSM 295
            S +NSM
Sbjct: 950  SFKNSM 955


>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1
            SV=3
          Length = 1634

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +2

Query: 98   THTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 277
            ++T  H+  ++ KE++ +   E +E  L +  E++E ++         L  ++ TY++  
Sbjct: 892  SYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGTTGLSGLHRTYSQDC 951

Query: 278  SCRNSM 295
            S +NSM
Sbjct: 952  SFKNSM 957


>sp|Q6NS45|CCD66_MOUSE Coiled-coil domain-containing protein 66
           OS=Mus musculus GN=Ccdc66 PE=1 SV=3
          Length = 935

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +2

Query: 134 KERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQDSAF 313
           +ERR +KQ+EH + ++ +  E + +++  +     E   + +   R         ++   
Sbjct: 454 RERRRQKQLEHQKAIMAQVEENRRKKRLEEEQRKKEEQELELRLAREREEMQRQYEEDIL 513

Query: 314 ARDQHTHVSSLKASNLLQILRRWR--AQSLKQ 403
            + Q   + +LK + L   ++R +  AQ LKQ
Sbjct: 514 KQRQREEIMTLKTNELFHTMQRAQELAQRLKQ 545


>sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase L
            OS=Dictyostelium discoideum GN=dhkL PE=3 SV=1
          Length = 1709

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 12/45 (26%), Positives = 28/45 (62%)
 Frame = +2

Query: 95   HTHTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGH 229
            H H Q H+     ++++ E   +H++H+  +  ++++QQQ++Q H
Sbjct: 1156 HHHQQVHL----QQQQQHEHDAQHNQHIQQQQQQQQQQQQQQQQH 1196


>sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120 OS=Arabidopsis
           thaliana GN=BHLH120 PE=3 SV=1
          Length = 209

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = +2

Query: 98  THTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPA-INMTYTRT 274
           T  Q+H+P+E  + ++ +K       LLH+NIER+ +Q+      FA L + + + Y + 
Sbjct: 10  TRHQSHMPQERDETKKEKK-------LLHRNIERQRRQE--MAILFASLRSQLPLKYIKA 60

Query: 275 TSCRNSMLQDS------AFARDQHTHVSSLKA 352
            S +             +F +D  T +  L A
Sbjct: 61  LSSQGKRAMSDHVNGAVSFIKDTQTRIKDLSA 92


>sp|A2RUB6|CCD66_HUMAN Coiled-coil domain-containing protein 66
           OS=Homo sapiens GN=CCDC66 PE=1 SV=4
          Length = 948

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +2

Query: 134 KERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQDSAF 313
           ++RR +KQ+EH + +  +  E++ ++Q  +     E     +   +         ++   
Sbjct: 457 RDRRRQKQLEHQKAITAQVEEKRRKKQLEEEQRKKEEQEEELRLAQEREEMQKQYEEDIL 516

Query: 314 ARDQHTHVSSLKASNLLQILRRWR--AQSLKQ 403
            + Q   + +LK + L Q ++R +  AQ LKQ
Sbjct: 517 KQKQKEEIMTLKTNELFQTMQRAQELAQRLKQ 548


>sp|Q04791|SASB_ANAPL Fatty acyl-CoA hydrolase precursor, medium
           chain OS=Anas platyrhynchos PE=1 SV=1
          Length = 557

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 224 LVDVAAAPFFLYSCVADARHARSASPNVVLYSF 126
           L+D  A P F++S V  ARH R A   V  Y F
Sbjct: 409 LLDSIADPLFVFSAVEVARHHRDAGNPVYFYEF 441


>sp|Q6BSZ4|PACC_DEBHA pH-response transcription factor pacC/RIM101
           OS=Debaryomyces hansenii GN=RIM101 PE=3 SV=2
          Length = 617

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 101 HTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHY 232
           H   H PK++ K  R  +Q EHD    +++    EQ+Q RQ H+
Sbjct: 251 HADDH-PKKLKKAHR-RQQEEHDHEREYEHEHEHEQEQYRQSHF 292


>sp|Q8MY86|FGFR1_DUGJA Fibroblast growth factor receptor 1
           OS=Dugesia japonica GN=FGFR1 PE=2 SV=1
          Length = 854

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 200 KEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQDSAFARDQHTHVSSLK 349
           K   Q R G+Y  +LP+ +   TR  S R+S L++  F      +  SLK
Sbjct: 471 KRLSQFRDGNYGEQLPSTSTDRTRLESTRHSQLENEVFECGSGNNSLSLK 520
tr_hit_id Q7YYM3
Definition tr|Q7YYM3|Q7YYM3_CRYPV Putative uncharacterized protein OS=Cryptosporidium parvum
Align length 100
Score (bit) 36.6
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963529|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_M13, 5'
         (621 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7YYM3|Q7YYM3_CRYPV Putative uncharacterized protein OS=Crypt...    37   1.2  
tr|Q5CWQ4|Q5CWQ4_CRYPV Putative uncharacterized protein OS=Crypt...    37   1.2  
tr|B4MX27|B4MX27_DROWI GK14540 OS=Drosophila willistoni GN=GK145...    37   1.2  
tr|A7AW30|A7AW30_BABBO Adenosylhomocysteinase (S-adenosyl-L-homo...    37   1.2  
tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824 OS=...    36   2.1  
tr|B4M1I9|B4M1I9_DROVI GJ19315 OS=Drosophila virilis GN=GJ19315 ...    35   4.7  
tr|B4JM34|B4JM34_DROGR GH24569 OS=Drosophila grimshawi GN=GH2456...    35   4.7  
tr|A9VZY8|A9VZY8_METEP Integrase family protein OS=Methylobacter...    34   6.1  
tr|B4MY21|B4MY21_DROWI GK10478 OS=Drosophila willistoni GN=GK104...    34   7.9  
tr|B4LBK3|B4LBK3_DROVI GJ11337 OS=Drosophila virilis GN=GJ11337 ...    34   7.9  
tr|O30328|O30328_ACEEU Aldehyde dehydrogenase subunit III OS=Ace...    34   8.0  
tr|Q3U0E6|Q3U0E6_MOUSE Putative uncharacterized protein OS=Mus m...    30   8.5  

>tr|Q7YYM3|Q7YYM3_CRYPV Putative uncharacterized protein
           OS=Cryptosporidium parvum GN=1MB.594 PE=4 SV=1
          Length = 1000

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 22/100 (22%), Positives = 48/100 (48%)
 Frame = +2

Query: 95  HTHTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRT 274
           HT TQ+     + + +  ++Q +  +HL H+     +QQQ+++   F++    N T T+T
Sbjct: 219 HTRTQSQPVAMVHQHQYQQQQQQQVQHLNHQQYFHSQQQQQQRMQTFSQSQTQNQTQTKT 278

Query: 275 TSCRNSMLQDSAFARDQHTHVSSLKASNLLQILRRWRAQS 394
            +  +S     +  +  +   +  +  +  QIL + + QS
Sbjct: 279 QAQIHSQSHSQSHVKAPNQTQTQTQVHSQTQILSQSQPQS 318


>tr|Q5CWQ4|Q5CWQ4_CRYPV Putative uncharacterized protein
           OS=Cryptosporidium parvum Iowa II GN=cgd6_4170 PE=4 SV=1
          Length = 1000

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 22/100 (22%), Positives = 48/100 (48%)
 Frame = +2

Query: 95  HTHTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRT 274
           HT TQ+     + + +  ++Q +  +HL H+     +QQQ+++   F++    N T T+T
Sbjct: 219 HTRTQSQPVAMVHQHQYQQQQQQQVQHLNHQQYFHSQQQQQQRMQTFSQSQTQNQTQTKT 278

Query: 275 TSCRNSMLQDSAFARDQHTHVSSLKASNLLQILRRWRAQS 394
            +  +S     +  +  +   +  +  +  QIL + + QS
Sbjct: 279 QAQIHSQSHSQSHVKAPNQTQTQTQVHSQTQILSQSQPQS 318


>tr|B4MX27|B4MX27_DROWI GK14540 OS=Drosophila willistoni GN=GK14540
           PE=4 SV=1
          Length = 281

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = +2

Query: 95  HTHTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRT 274
           H   + H   EM+   R +++ E D H   ++IER+          +   P+I+ +  R+
Sbjct: 28  HNRDRDHKSSEMNHHGRRDRERERDRHRSDRHIERERD--------YRHSPSISKSRKRS 79

Query: 275 TSCRNSMLQDSAFARDQH--THVSSLKASNLLQILR 376
           +S  +S   D    R +H  T    L   N LQ+ R
Sbjct: 80  SSSSDSPYSDHESQRSRHKRTRFKKLDEQNQLQVER 115


>tr|A7AW30|A7AW30_BABBO Adenosylhomocysteinase
           (S-adenosyl-L-homocysteinehydrolase) OS=Babesia bovis
           GN=BBOV_I001740 PE=3 SV=1
          Length = 491

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 278 WWCVYMSCLWPEALRNNVLVDVAAAPFFL--YSCVADARHARSAS 150
           WWCVY S  WP A    ++VD   + + +  Y    + RHA+  S
Sbjct: 121 WWCVYQSLRWPNADGPQLIVDDGCSAYTMIKYGLDLERRHAKDGS 165


>tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824
           OS=Homo sapiens PE=2 SV=1
          Length = 289

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 18/66 (27%), Positives = 36/66 (54%)
 Frame = +2

Query: 98  THTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 277
           ++T  H+  ++ KER+ +   E +E  L +  E++E ++       A L  ++ TY++  
Sbjct: 49  SYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDC 108

Query: 278 SCRNSM 295
           S +NSM
Sbjct: 109 SFKNSM 114


>tr|B4M1I9|B4M1I9_DROVI GJ19315 OS=Drosophila virilis GN=GJ19315
           PE=4 SV=1
          Length = 1200

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +2

Query: 95  HTHTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQ-----RRQGHYFAELPAINM 259
           H   Q H P+   +++  ++  +H +H LH+N + ++ QQ     +R  + F E   +  
Sbjct: 564 HLEQQQHFPQRYHQQQAQQQHQQHQQHQLHQNCQHQQPQQLVHRGKRYANGFNEAAQLRR 623

Query: 260 TYTRTTSCRNSMLQDSAFA 316
           T     + R  +   +A A
Sbjct: 624 TEPTHVALRRELAAVAATA 642


>tr|B4JM34|B4JM34_DROGR GH24569 OS=Drosophila grimshawi GN=GH24569
           PE=4 SV=1
          Length = 971

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +2

Query: 104 TQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQ----GHYFAELPAINMTYTR 271
           TQAH   +++        +    HL H++ ++++QQQ++Q     H    LPA   T T 
Sbjct: 591 TQAHAAGDLNMNVNQAAPVVQQPHLQHQHQQQQQQQQQQQQQQPAHMLLLLPATTTTATT 650

Query: 272 TTS 280
           TT+
Sbjct: 651 TTA 653


>tr|A9VZY8|A9VZY8_METEP Integrase family protein OS=Methylobacterium
           extorquens (strain PA1) GN=Mext_0473 PE=4 SV=1
          Length = 377

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +2

Query: 125 EMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAELPAINMTYTR 271
           E  KE RWE Q++ ++ LLH N E +EQ  +R+     ++P I + Y R
Sbjct: 208 EAVKELRWE-QVDFEDGLLHLNPEEREQTSKRRP--VVKMPPILIAYLR 253


>tr|B4MY21|B4MY21_DROWI GK10478 OS=Drosophila willistoni GN=GK10478
           PE=4 SV=1
          Length = 466

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 15/50 (30%), Positives = 32/50 (64%)
 Frame = +2

Query: 95  HTHTQAHIPKEMSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAEL 244
           H+HTQ H      ++++ +   +H +HL H+  ++++QQQ++Q H+  +L
Sbjct: 214 HSHTQQH-----QQQQQQQLHQQHQQHLQHQ--QQQQQQQQQQQHHAVQL 256


>tr|B4LBK3|B4LBK3_DROVI GJ11337 OS=Drosophila virilis GN=GJ11337
           PE=4 SV=1
          Length = 644

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +2

Query: 128 MSKERRWEKQIEHDEHLLHKNIERKEQQQRRQGHYFAEL----PAINMTYTRTTS 280
           + ++++ ++Q++H + + H    ++ QQQ++Q H+FA++    P    TYT   S
Sbjct: 347 LQQQQQQQQQMQHMQQMQHMQQMQQMQQQQQQQHHFAQVQQQHPVAGPTYTHCCS 401