NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963532
Clone id TST39A01NGRL0016_M16
Library
Length 419
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_M16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGGAGAGGCTCATTGATCCTACACAATGGTTGGATGTATCAGTTGAGAGGTATTCATTTT
ACTCAAAGCTCGGAGAGTCGAGTATCTAGTACTTCAAGCGCAATGCATCTGGCTCCCTGC
AACTACTTGAAAGCTGATGTAAGCCGTGAGTCTTATTAAGGTGACTCCAAATTGCTATCA
GGAAATTGAAGCGATCATTTATCAAGTGACAAGTATATAACCTGCTGATGAAAAAGGTTC
GGGCCACTTCGTTTCGTTGATGATATTGGATTTTACCGTCATATTTTGATATTCTACTGG
CTATTGTGTATGTAGCTTATCCGTGATGTGGGTTGTTGATACAGAGAGTTTCTCTCTCAA
ACTGAAATTTTTGCTACTGCCTCAAGTGGGCCTGCTTTTCGGAATTTAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q10201
Definition sp|Q10201|YBX7_SCHPO Uncharacterized protein C17D1.07c OS=Schizosaccharomyces pombe
Align length 35
Score (bit) 32.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963532|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_M16, 5'
         (407 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10201|YBX7_SCHPO Uncharacterized protein C17D1.07c OS=Schizo...    32   0.97 
sp|Q85ZS6|MATK_PSAJU Maturase K OS=Psathyrostachys juncea GN=mat...    30   3.7  
sp|Q4FNR7|MNME_PELUB tRNA modification GTPase mnmE OS=Pelagibact...    30   4.8  
sp|Q01638|ILRL1_HUMAN Interleukin-1 receptor-like 1 OS=Homo sapi...    29   6.3  
sp|Q9BRP0|OVOL2_HUMAN Transcription factor Ovo-like 2 OS=Homo sa...    29   8.2  

>sp|Q10201|YBX7_SCHPO Uncharacterized protein C17D1.07c
            OS=Schizosaccharomyces pombe GN=SPBC17D1.07c PE=2 SV=1
          Length = 962

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 337  NNPHHG*ATYTIASRISKYDGKIQYHQRNEVARTF 233
            N P H    YT  + ISKYD +I ++Q+ E  +TF
Sbjct: 916  NLPFHVKQLYTWLAPISKYDSEISFNQKKERRKTF 950


>sp|Q85ZS6|MATK_PSAJU Maturase K OS=Psathyrostachys juncea GN=matK
           PE=3 SV=1
          Length = 511

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -2

Query: 238 TFFISRLYTCHLINDRFNFLIAIWSHLNKTHGLHQLSSSC 119
           TFF+ + + C+LIN  + +    W+   + H ++QL++SC
Sbjct: 294 TFFLKKKWKCYLIN-FWQYYFCFWTQPRRIH-INQLANSC 331


>sp|Q4FNR7|MNME_PELUB tRNA modification GTPase mnmE OS=Pelagibacter
           ubique GN=mnmE PE=3 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 168 GVTLIRLTAYISFQVVAGSQMHCA*STRYSTLRALSKMNTSQLIHPTIV 22
           G+ ++R++   + +V+          TR +TLR ++K+NTS+LI   I+
Sbjct: 14  GIAIVRVSGKDTKKVIKLLTNAALPETRVATLRKINKINTSELIDEGII 62


>sp|Q01638|ILRL1_HUMAN Interleukin-1 receptor-like 1 OS=Homo sapiens
           GN=IL1RL1 PE=1 SV=4
          Length = 556

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
 Frame = -2

Query: 373 QKFQFERETLCINNPHHG*ATYTIASRISKYDGKIQYHQRNEVARTFFI----------S 224
           Q +  E E L +  P  G  +YT+    S+ +  I   +RN V  +  +          S
Sbjct: 23  QSWGLENEALIVRCPRQGKPSYTVDWYYSQTNKSIPTQERNRVFASGQLLKFLPAAVADS 82

Query: 223 RLYTCHLINDRFNFLIAIWSHLNKTHGLHQLSSSCREPDAL 101
            +YTC + +  FN       + N T  +++  S C  PD L
Sbjct: 83  GIYTCIVRSPTFNRT----GYANVT--IYKKQSDCNVPDYL 117


>sp|Q9BRP0|OVOL2_HUMAN Transcription factor Ovo-like 2 OS=Homo
           sapiens GN=OVOL2 PE=2 SV=1
          Length = 275

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 241 RTFFISRLYTCHLINDRFNFLIAIWSHLNKTHGLHQ 134
           RT    R Y C++ N  F    ++ SHL K HG+ Q
Sbjct: 167 RTHTGIRPYKCNVCNKAFTQRCSLESHLKKIHGVQQ 202
tr_hit_id B4HJX2
Definition tr|B4HJX2|B4HJX2_DROSE GM23819 OS=Drosophila sechellia
Align length 60
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963532|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_M16, 5'
         (407 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4HJX2|B4HJX2_DROSE GM23819 OS=Drosophila sechellia GN=GM2381...    35   1.4  
tr|B4QWJ5|B4QWJ5_DROSI GD18629 OS=Drosophila simulans GN=GD18629...    35   1.9  
tr|Q16R71|Q16R71_AEDAE Zinc finger protein (Fragment) OS=Aedes a...    33   5.5  
tr|Q9VHA9|Q9VHA9_DROME CG8301 OS=Drosophila melanogaster GN=CG83...    33   7.2  
tr|B4PUR5|B4PUR5_DROYA GE25966 OS=Drosophila yakuba GN=GE25966 P...    33   9.4  

>tr|B4HJX2|B4HJX2_DROSE GM23819 OS=Drosophila sechellia GN=GM23819
           PE=4 SV=1
          Length = 529

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 304 IASRISKYDGKIQYHQRNEVARTFFISRLYTCHLINDRFNFLIAIWSHLNKTHGLHQLSS 125
           +  R   ++  ++ HQR    +T+     Y C L  +RF   I + +H+ KTH    LS+
Sbjct: 462 VCGRAYLFEKSLRLHQRTHTGKTY-----YKCDLCQERFVTHIKLKTHMQKTHATQPLSA 516


>tr|B4QWJ5|B4QWJ5_DROSI GD18629 OS=Drosophila simulans GN=GD18629
           PE=4 SV=1
          Length = 223

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 304 IASRISKYDGKIQYHQRNEVARTFFISRLYTCHLINDRFNFLIAIWSHLNKTHGLHQLSS 125
           +  R   ++  ++ HQR    +T+     Y C L  +RF   I + +H+ KTH    LS+
Sbjct: 156 VCGRAYLFEKSLRLHQRTHTGKTY-----YKCDLCQERFVTHIKLKTHMQKTHASQPLSA 210


>tr|Q16R71|Q16R71_AEDAE Zinc finger protein (Fragment) OS=Aedes
           aegypti GN=AAEL011047 PE=4 SV=1
          Length = 532

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 217 YTCHLINDRFNFLIAIWSHLNKTHG 143
           Y CH+   RFN+ +++ SH+ + HG
Sbjct: 155 YACHMCEQRFNYKVSLHSHIERHHG 179


>tr|Q9VHA9|Q9VHA9_DROME CG8301 OS=Drosophila melanogaster GN=CG8301
           PE=2 SV=1
          Length = 607

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -2

Query: 304 IASRISKYDGKIQYHQRNEVARTFFISRLYTCHLINDRFNFLIAIWSHLNKTHGLHQLSS 125
           +  R   ++  ++ HQR    +T+     Y C L  +RF   I + +H+ K H   Q  S
Sbjct: 539 VCGRAYLFEKSLRLHQRTHTGKTY-----YKCDLCQERFVTHIKLKTHMQKAHAASQPHS 593

Query: 124 SCREPDAL 101
           + +  D L
Sbjct: 594 ADQPLDDL 601


>tr|B4PUR5|B4PUR5_DROYA GE25966 OS=Drosophila yakuba GN=GE25966 PE=4
           SV=1
          Length = 599

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 304 IASRISKYDGKIQYHQRNEVARTFFISRLYTCHLINDRFNFLIAIWSHLNKTH 146
           +  R   ++  ++ HQR    +T+     Y C L  +RF   I + +H+ KTH
Sbjct: 532 VCGRAYLFEKSLRLHQRTHTGKTY-----YKCDLCQERFVTHIKLKTHMQKTH 579