DK963540 |
Clone id |
TST39A01NGRL0016_M24 |
Library |
TST39 |
Length |
632 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_M24. 5' end sequence. |
Accession |
DK963540 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1179Contig1 |
Sequence |
GAAGGCACCGAAGAAACCAGATAAAGTGCTTCCATGTCCTCGGTGTCACAGCCTTGATAC AAAGTTTTGTTATTTCAACAACTACAATGTAAATCAGCCTCGCCACTTCTGCAGGAAATG CCAGCGGTACTGGACTGCTGGTGGCACTTTACGGAATGTACCAGTGGGTGCAGGACGTAG GAAAAACAAGCATTCTGCTTCACATCAAAAACATGGTATTGTTTCTGATGCTTTACAAGT ACGTACTAGTCGCCTGATGTGGCACGCAACAGGTTCTGCGGTGCTAGCATTTCCCCGGGC ACAATCCTCAGTTCAAAGCCAAGGCTGCACGTTCTACCTTTAGATACACAATCTATACCT ACCTCGGATAGCCCTTTAGCTAATAGTAGAATGCTTAGTTTTGGTCAAGAGAGCCCTCTT TGCAAAAGTATGGCTGCAACTACGCTAGGATTACAGGAGAATGCAACCTTGCAGAATCGT GGAGGCATCCATGTTGATGGTGCCATGGGAGCTGATGTCACATTTGCACTTGGTGGCAAA GACACGTCAGAGCTTGAAGATTGCACAATATCAGGAAAAATTTCACCTCCAAGCTGCCAA ACAGGTATGAACAATGCCACGATTGCAGCTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q93ZL5 |
Definition |
sp|Q93ZL5|DOF52_ARATH Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana |
Align length |
97 |
Score (bit) |
141.0 |
E-value |
1.0e-34 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PMX9 |
Definition |
tr|A7PMX9|A7PMX9_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
80 |
Score (bit) |
150.0 |
E-value |
6.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963540|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0016_M24, 5' (632 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PMX9|A7PMX9_VITVI Chromosome chr14 scaffold_21, whole genom... 150 6e-35 tr|A7PDL2|A7PDL2_VITVI Chromosome chr17 scaffold_12, whole genom... 150 8e-35 tr|A5CAA8|A5CAA8_VITVI Putative uncharacterized protein OS=Vitis... 150 8e-35 tr|A7QRG2|A7QRG2_VITVI Chromosome chr8 scaffold_150, whole genom... 140 2e-34 tr|Q5XF25|Q5XF25_ARATH At5g39660 OS=Arabidopsis thaliana PE=2 SV=1 141 2e-33 tr|Q39540|Q39540_CUCMA AOBP (Ascorbate oxidase promoter-binding ... 144 4e-33 tr|A5AJU8|A5AJU8_VITVI Putative uncharacterized protein OS=Vitis... 144 6e-33 tr|Q0GLC4|Q0GLC4_SOYBN Dof27 OS=Glycine max PE=2 SV=1 132 6e-33 tr|A9RZ17|A9RZ17_PHYPA Predicted protein OS=Physcomitrella paten... 139 2e-31 tr|B6SY12|B6SY12_MAIZE Putative uncharacterized protein OS=Zea m... 133 2e-31 tr|Q5NBA7|Q5NBA7_ORYSJ Putative ascorbate oxidase promoter-bindi... 137 4e-31 tr|Q0JNV4|Q0JNV4_ORYSJ Os01g0264000 protein (Putative uncharacte... 137 4e-31 tr|B8AC63|B8AC63_ORYSI Putative uncharacterized protein OS=Oryza... 137 4e-31 tr|Q948I5|Q948I5_ORYSA Putative H-protein promoter binding facto... 136 9e-31 tr|Q338F9|Q338F9_ORYSJ Dof domain, zinc finger family protein, e... 136 9e-31 tr|B8BGR5|B8BGR5_ORYSI Putative uncharacterized protein OS=Oryza... 136 9e-31 tr|A7QEC0|A7QEC0_VITVI Chromosome chr1 scaffold_84, whole genome... 136 9e-31 tr|A3C4K8|A3C4K8_ORYSJ Putative uncharacterized protein OS=Oryza... 136 9e-31 tr|Q14DX9|Q14DX9_PICAB Dof domain zinc finger DNA-binding protei... 136 1e-30 tr|B6ZAF7|B6ZAF7_HELPE Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAE9|B6ZAE9_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAE3|B6ZAE3_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAE2|B6ZAE2_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAD9|B6ZAD9_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAD8|B6ZAD8_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAD6|B6ZAD6_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAD5|B6ZAD5_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAD2|B6ZAD2_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAD0|B6ZAD0_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30 tr|B6ZAC9|B6ZAC9_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 135 2e-30
>tr|A7PMX9|A7PMX9_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020987001 PE=4 SV=1 Length = 268
Score = 150 bits (379), Expect = 6e-35 Identities = 63/80 (78%), Positives = 73/80 (91%) Frame = +2
Query: 2 KAPKKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRR 181 K KKPDK+LPCPRC+S+DTKFCY+NNYNVNQPRHFC+ CQRYWTAGGT+RNVPVGAGRR Sbjct: 44 KTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRR 103
Query: 182 KNKHSASHQKHGIVSDALQV 241 KNK+S SH +H VS+ALQ+ Sbjct: 104 KNKNSTSHYRHITVSEALQI 123
>tr|A7PDL2|A7PDL2_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016324001 PE=4 SV=1 Length = 367
Score = 150 bits (378), Expect = 8e-35 Identities = 62/79 (78%), Positives = 73/79 (92%) Frame = +2
Query: 2 KAPKKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRR 181 K KKPDK+LPCPRC+S+DTKFCY+NNYN+NQPRHFC+ CQRYWTAGGT+RNVPVGAGRR Sbjct: 105 KTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRR 164
Query: 182 KNKHSASHQKHGIVSDALQ 238 KNK+SASH +H +S+ALQ Sbjct: 165 KNKNSASHYRHITISEALQ 183
>tr|A5CAA8|A5CAA8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035904 PE=4 SV=1 Length = 473
Score = 150 bits (378), Expect = 8e-35 Identities = 62/79 (78%), Positives = 73/79 (92%) Frame = +2
Query: 2 KAPKKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRR 181 K KKPDK+LPCPRC+S+DTKFCY+NNYN+NQPRHFC+ CQRYWTAGGT+RNVPVGAGRR Sbjct: 112 KTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRR 171
Query: 182 KNKHSASHQKHGIVSDALQ 238 KNK+SASH +H +S+ALQ Sbjct: 172 KNKNSASHYRHITISEALQ 190
Score = 35.0 bits (79), Expect = 3.7 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Frame = +1
Query: 379 ANSRMLSFGQESPLCKSMAATTLGLQENATLQN-RGGIHVDGAMGADVTFAL--GGKDTS 549 +N +L+FG ++P C SM + L L+E R G H G V+F + G D S Sbjct: 207 SNGTVLTFGSDAPFCDSM-TSVLNLEEKKMPNGARNGFHTHKEQGIPVSFRVQENGDDHS 265
Query: 550 ELEDCTISGKISPPSCQTGMNNA 618 T+S S + G++ A Sbjct: 266 SASSITVSNS-SEEGSKYGLHEA 287
>tr|A7QRG2|A7QRG2_VITVI Chromosome chr8 scaffold_150, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003807001 PE=4 SV=1 Length = 420
Score = 140 bits (353), Expect(2) = 2e-34 Identities = 60/75 (80%), Positives = 67/75 (89%) Frame = +2
Query: 2 KAPKKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRR 181 K KKPDK+LPCPRC+SL+TKFCYFNNYNVNQPRHFC+ CQRYWTAGGT+RNVPVGAGRR Sbjct: 20 KVLKKPDKILPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRR 79
Query: 182 KNKHSASHQKHGIVS 226 KNKH AS + +VS Sbjct: 80 KNKHLASQYRQIMVS 94
Score = 29.6 bits (65), Expect(2) = 2e-34 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +1
Query: 295 PGTILSSKPRLHVLPLDTQSIPTSDSP-LANSRMLSFGQESPLCKSMAATTLGLQE 459 P T++ + + L T+ P A+ +L FG E+PLCKSM T L ++E Sbjct: 99 PTTVIEASDSSNQQILSCGETSTTFRPSTASGTVLKFGPEAPLCKSM-ETVLSIRE 153
>tr|Q5XF25|Q5XF25_ARATH At5g39660 OS=Arabidopsis thaliana PE=2 SV=1 Length = 457
Score = 141 bits (355), Expect(2) = 2e-33 Identities = 62/97 (63%), Positives = 76/97 (78%), Gaps = 3/97 (3%) Frame = +2
Query: 11 KKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRRKNK 190 KKPDK+LPCPRC+S++TKFCY+NNYNVNQPRHFC+KCQRYWTAGGT+RNVPVGAGRRKNK Sbjct: 132 KKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNK 191
Query: 191 HSASHQKHGI---VSDALQVRTSRLMWHATGSAVLAF 292 ASH + ++A+Q + H G+ +L F Sbjct: 192 SPASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTF 228
Score = 25.8 bits (55), Expect(2) = 2e-33 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +1
Query: 385 SRMLSFGQESPLCKSMAATTLGLQENATLQNR 480 + +L+FG +S LC+SM A+ L L E + L+ + Sbjct: 223 ANLLTFGSDSVLCESM-ASGLNLVEKSLLKTQ 253
>tr|Q39540|Q39540_CUCMA AOBP (Ascorbate oxidase promoter-binding protein) OS=Cucurbita maxima PE=2 SV=1 Length = 380
Score = 144 bits (363), Expect = 4e-33 Identities = 59/76 (77%), Positives = 71/76 (93%) Frame = +2
Query: 11 KKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRRKNK 190 KKPDK+LPCPRC+S++TKFCY+NNYNVNQPRHFC+ CQRYWT GGT+RNVPVGAGRRKNK Sbjct: 34 KKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTIRNVPVGAGRRKNK 93
Query: 191 HSASHQKHGIVSDALQ 238 +SASH +H +S+AL+ Sbjct: 94 NSASHYRHITISEALR 109
>tr|A5AJU8|A5AJU8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028596 PE=4 SV=1 Length = 475
Score = 144 bits (362), Expect = 6e-33 Identities = 63/80 (78%), Positives = 73/80 (91%), Gaps = 1/80 (1%) Frame = +2
Query: 2 KAPKKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRR 181 K KKPDK+LPCPRC+S+DTKFCY+NNYNVNQPRHFC+ CQRYWTAGGT+RNVPVGAGRR Sbjct: 114 KTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRR 173
Query: 182 KNKH-SASHQKHGIVSDALQ 238 KNK+ SAS +H +VS+ALQ Sbjct: 174 KNKNSSASQYRHIMVSEALQ 193
>tr|Q0GLC4|Q0GLC4_SOYBN Dof27 OS=Glycine max PE=2 SV=1 Length = 322
Score = 132 bits (332), Expect(2) = 6e-33 Identities = 55/77 (71%), Positives = 65/77 (84%) Frame = +2
Query: 2 KAPKKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRR 181 K +KPDK+LPCPRC+S+DTKFCY+NNYNVNQPRHFC+ CQRYWTAGG +RNVPVGAGRR Sbjct: 56 KTLRKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGVMRNVPVGAGRR 115
Query: 182 KNKHSASHQKHGIVSDA 232 KNK+ S + V +A Sbjct: 116 KNKNFTSQYRQITVPEA 132
Score = 32.7 bits (73), Expect(2) = 6e-33 Identities = 24/81 (29%), Positives = 40/81 (49%) Frame = +1
Query: 286 SISPGTILSSKPRLHVLPLDTQSIPTSDSPLANSRMLSFGQESPLCKSMAATTLGLQENA 465 ++ +LSS+P L P S N+ +L+FG ++PLC+SM + L L E A Sbjct: 128 TVPEAALLSSQPDL----------PNGPSLNCNATLLAFGSDTPLCESM-TSVLNLAEKA 176
Query: 466 TLQNRGGIHVDGAMGADVTFA 528 + N +G+ ++ FA Sbjct: 177 -VNNSTTNGFNGSEELEIPFA 196
>tr|A9RZ17|A9RZ17_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161886 PE=4 SV=1 Length = 733
Score = 139 bits (349), Expect = 2e-31 Identities = 59/75 (78%), Positives = 64/75 (85%) Frame = +2
Query: 5 APKKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRRK 184 A KKPDK+ PCPRC SLDTKFCY+NNYN NQPRHFC+ CQRYWTAGGTLRNVPVGAGRRK Sbjct: 287 ALKKPDKLAPCPRCDSLDTKFCYYNNYNANQPRHFCKNCQRYWTAGGTLRNVPVGAGRRK 346
Query: 185 NKHSASHQKHGIVSD 229 KH SH +HG + D Sbjct: 347 TKHGNSHVRHGGLLD 361
>tr|B6SY12|B6SY12_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 556
Score = 133 bits (335), Expect(2) = 2e-31 Identities = 53/67 (79%), Positives = 64/67 (95%) Frame = +2
Query: 11 KKPDKVLPCPRCHSLDTKFCYFNNYNVNQPRHFCRKCQRYWTAGGTLRNVPVGAGRRKNK 190 KKPDK+LPCPRC+S+DTKFCY+NNYNVNQPRHFC+ CQRYWTAGGT+RNVPVGAGRRK+K Sbjct: 167 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSK 226
Query: 191 HSASHQK 211 +++ H + Sbjct: 227 NASLHYR 233
Score = 26.6 bits (57), Expect(2) = 2e-31 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +1
Query: 313 SKPRLHVLPLDTQSIPTSDSPLA--NSRMLSFGQESPLCKSMAA 438 SKP VLP S P + + A N +L FG E P C+SM + Sbjct: 250 SKP---VLPEALASSPPAPTQPASRNGTVLKFGPEVPFCESMVS 290
|