DK963551 |
Clone id |
TST39A01NGRL0016_N11 |
Library |
TST39 |
Length |
565 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_N11. 5' end sequence. |
Accession |
DK963551 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL679Contig1 |
Sequence |
TCTCGTCTCGCGAGTCCCATCGGCCATATCCATAGCACCTGCGGCTCATCTGTAGGCCGG AGAGCTATCTTCCAGAAAGAAAATGAGGGAAATTCTCCACATTCAAGGTGGCCAATGCGG CAATCAAATTGGTTCCAAGTTTTGGGAGGTGATCTGTGATGAACATGGCATTGACCCCAC AGGTTCTTACAAGGGTGATTCGGAGCTGCAGCTTGAGCGTATCAATGTCTATTTCAATGA AGCCAGTGGGGGAAGATATGTGCCTAGGGCAGTTCTCATGGATCTGGAGCCTGGTACTAT GGATAGTGTGCGTACGGGACCGCTGGGACAAATTTTTAGGCCTGATAACTTTGTGTTTGG CCAAAGTGGAGCTGGAAACAACTGGGCCAAAGGACACTACACTGAAGGTGCTGAACTTAT CGACTCTGTTTTGGATGTTGTAAGGAAAGAGGCGGAGAATTGTGACTGTCTTCAAGGTTT TGAAGTCTGCCATTCTCTAGGAGGCGGCACTGGTTCTGGTATGGGAACACTACTCATCTC AAAAGATACGGGAGGAGTATCCGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P28551 |
Definition |
sp|P28551|TBB3_SOYBN Tubulin beta chain (Fragment) OS=Glycine max |
Align length |
137 |
Score (bit) |
278.0 |
E-value |
1.0e-74 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4FTM1 |
Definition |
tr|B4FTM1|B4FTM1_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
162 |
Score (bit) |
280.0 |
E-value |
4.0e-74 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963551|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0016_N11, 5' (565 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4FTM1|B4FTM1_MAIZE Putative uncharacterized protein OS=Zea m... 280 4e-74 tr|A9SKU2|A9SKU2_PHYPA Predicted protein OS=Physcomitrella paten... 278 1e-73 tr|A7KQH3|A7KQH3_EUCGR Beta-tubulin OS=Eucalyptus grandis GN=TUB... 278 2e-73 tr|Q0DA75|Q0DA75_ORYSJ Os06g0671900 protein OS=Oryza sativa subs... 277 3e-73 tr|A3BEJ5|A3BEJ5_ORYSJ cDNA clone:J023010B07, full insert sequen... 277 3e-73 tr|A2YG29|A2YG29_ORYSI Putative uncharacterized protein OS=Oryza... 277 3e-73 tr|Q10CU1|Q10CU1_ORYSJ Os03g0780600 protein OS=Oryza sativa subs... 276 4e-73 tr|A9RY37|A9RY37_PHYPA Predicted protein OS=Physcomitrella paten... 276 4e-73 tr|A2XMI9|A2XMI9_ORYSI Putative uncharacterized protein OS=Oryza... 276 4e-73 tr|B8AY97|B8AY97_ORYSI Putative uncharacterized protein OS=Oryza... 276 6e-73 tr|A3B412|A3B412_ORYSJ Putative uncharacterized protein OS=Oryza... 276 6e-73 tr|Q0E3L8|Q0E3L8_ORYSJ Os02g0167300 protein OS=Oryza sativa subs... 276 7e-73 tr|A9PEU0|A9PEU0_POPTR Putative uncharacterized protein OS=Popul... 276 7e-73 tr|A5CFY6|A5CFY6_HORVD Beta tubulin 3 OS=Hordeum vulgare var. di... 276 7e-73 tr|A2X1B6|A2X1B6_ORYSI Putative uncharacterized protein OS=Oryza... 276 7e-73 tr|Q676U1|Q676U1_9SOLA Beta-tubulin OS=Nicotiana attenuata GN=TU... 275 1e-72 tr|Q38MV0|Q38MV0_SOLLC Beta-tubulin OS=Solanum lycopersicum GN=T... 275 1e-72 tr|B8AAY0|B8AAY0_ORYSI Putative uncharacterized protein OS=Oryza... 275 1e-72 tr|B5M4B1|B5M4B1_SOLTU Beta-tubulin OS=Solanum tuberosum PE=2 SV=1 275 1e-72 tr|A5ANL9|A5ANL9_VITVI Putative uncharacterized protein OS=Vitis... 275 1e-72 tr|A4ZYP3|A4ZYP3_CAPAN Beta tubulin OS=Capsicum annuum PE=2 SV=1 275 1e-72 tr|A7PH61|A7PH61_VITVI Chromosome chr17 scaffold_16, whole genom... 275 1e-72 tr|A5CFY8|A5CFY8_HORVD Beta tubulin 5 OS=Hordeum vulgare var. di... 275 1e-72 tr|Q8GZ16|Q8GZ16_ARATH Putative tubulin beta-1 chain (At1g75780)... 274 2e-72 tr|Q2TFP1|Q2TFP1_SOYBN Tubulin B4 OS=Glycine max PE=2 SV=1 274 2e-72 tr|A7PG08|A7PG08_VITVI Chromosome chr6 scaffold_15, whole genome... 274 2e-72 tr|A5CFY5|A5CFY5_HORVD Beta tubulin 2 OS=Hordeum vulgare var. di... 274 2e-72 tr|Q6TYR3|Q6TYR3_PHYPA Beta-tubulin 5 OS=Physcomitrella patens G... 274 3e-72 tr|Q0E4V5|Q0E4V5_ORYSI Beta-tubulin 6 (Fragment) OS=Oryza sativa... 274 3e-72 tr|Q0DI63|Q0DI63_ORYSJ Os05g0413200 protein OS=Oryza sativa subs... 274 3e-72
>tr|B4FTM1|B4FTM1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 496
Score = 280 bits (716), Expect = 4e-74 Identities = 133/162 (82%), Positives = 143/162 (88%) Frame = +2
Query: 8 SRVPSAISIAPAAHL*AGELSSRKKMREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGS 187 SR+P AP A G + KMREILHIQGGQCGNQIG+KFWEV+CDEHGIDPTG Sbjct: 27 SRLPDLARSAPVASQ-FGSSHTSAKMREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGR 85
Query: 188 YKGDSELQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQS 367 Y G+S+LQLER+NVY+NEAS GR+VPRAVLMDLEPGTMDSVRTGP GQIFRPDNFVFGQS Sbjct: 86 YTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQS 145
Query: 368 GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFEVCH 493 GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGF+VCH Sbjct: 146 GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 187
>tr|A9SKU2|A9SKU2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_232451 PE=3 SV=1 Length = 444
Score = 278 bits (711), Expect = 1e-73 Identities = 127/137 (92%), Positives = 135/137 (98%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILHIQGGQCGNQIG+KFWEVICDEHGIDPTG+Y GDS+LQLER+NVYFNEASGGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDPTGTYHGDSDLQLERVNVYFNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAE+CDCLQGF+VCH Sbjct: 121 RKEAESCDCLQGFQVCH 137
>tr|A7KQH3|A7KQH3_EUCGR Beta-tubulin OS=Eucalyptus grandis GN=TUB4 PE=2 SV=1 Length = 449
Score = 278 bits (710), Expect = 2e-73 Identities = 128/137 (93%), Positives = 133/137 (97%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILHIQGGQCGNQIG+KFWEVICDEHGID TG Y GDSELQLERINVY+NEASGGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDATGKYNGDSELQLERINVYYNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAENCDCLQGF+VCH Sbjct: 121 RKEAENCDCLQGFQVCH 137
>tr|Q0DA75|Q0DA75_ORYSJ Os06g0671900 protein OS=Oryza sativa subsp. japonica GN=Os06g0671900 PE=3 SV=1 Length = 433
Score = 277 bits (708), Expect = 3e-73 Identities = 128/137 (93%), Positives = 133/137 (97%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILHIQGGQCGNQIG+KFWEVICDEHGID TG Y GDS+LQLERINVY+NEASGGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAENCDCLQGF+VCH Sbjct: 121 RKEAENCDCLQGFQVCH 137
>tr|A3BEJ5|A3BEJ5_ORYSJ cDNA clone:J023010B07, full insert sequence OS=Oryza sativa subsp. japonica GN=OsJ_021467 PE=2 SV=1 Length = 446
Score = 277 bits (708), Expect = 3e-73 Identities = 128/137 (93%), Positives = 133/137 (97%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILHIQGGQCGNQIG+KFWEVICDEHGID TG Y GDS+LQLERINVY+NEASGGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAENCDCLQGF+VCH Sbjct: 121 RKEAENCDCLQGFQVCH 137
>tr|A2YG29|A2YG29_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24075 PE=3 SV=1 Length = 446
Score = 277 bits (708), Expect = 3e-73 Identities = 128/137 (93%), Positives = 133/137 (97%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILHIQGGQCGNQIG+KFWEVICDEHGID TG Y GDS+LQLERINVY+NEASGGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAENCDCLQGF+VCH Sbjct: 121 RKEAENCDCLQGFQVCH 137
>tr|Q10CU1|Q10CU1_ORYSJ Os03g0780600 protein OS=Oryza sativa subsp. japonica GN=Os03g0780600 PE=2 SV=1 Length = 444
Score = 276 bits (707), Expect = 4e-73 Identities = 127/137 (92%), Positives = 133/137 (97%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG Y GDS+LQLERINVY+NEASGGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQLERINVYYNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAENCDCLQGF+VCH Sbjct: 121 RKEAENCDCLQGFQVCH 137
>tr|A9RY37|A9RY37_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_121199 PE=3 SV=1 Length = 443
Score = 276 bits (707), Expect = 4e-73 Identities = 125/137 (91%), Positives = 135/137 (98%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILH+QGGQCGNQIG+KFWEVICDEHGIDPTG+Y GDS+LQLERINVYFNEASGGRYV Sbjct: 1 MREILHVQGGQCGNQIGAKFWEVICDEHGIDPTGTYHGDSDLQLERINVYFNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQ+GAGNNWAKGHYT+GAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTDGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAE+CDCLQGF++CH Sbjct: 121 RKEAESCDCLQGFQICH 137
>tr|A2XMI9|A2XMI9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13743 PE=3 SV=1 Length = 444
Score = 276 bits (707), Expect = 4e-73 Identities = 127/137 (92%), Positives = 133/137 (97%) Frame = +2
Query: 83 MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGRYV 262 MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG Y GDS+LQLERINVY+NEASGGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQLERINVYYNEASGGRYV 60
Query: 263 PRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442 PRAVLMDLEPGTMDSVR+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFEVCH 493 RKEAENCDCLQGF+VCH Sbjct: 121 RKEAENCDCLQGFQVCH 137
>tr|B8AY97|B8AY97_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19960 PE=4 SV=1 Length = 624
Score = 276 bits (706), Expect = 6e-73 Identities = 127/139 (91%), Positives = 134/139 (96%) Frame = +2
Query: 77 KKMREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYKGDSELQLERINVYFNEASGGR 256 +KMREILHIQGGQCGNQIGSKFWEV+CDEHGIDPTG Y G S+LQLER+NVY+NEAS GR Sbjct: 179 EKMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGR 238
Query: 257 YVPRAVLMDLEPGTMDSVRTGPLGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 436 +VPRAVLMDLEPGTMDSVRTGP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD Sbjct: 239 FVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 298
Query: 437 VVRKEAENCDCLQGFEVCH 493 VVRKEAENCDCLQGF+VCH Sbjct: 299 VVRKEAENCDCLQGFQVCH 317
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