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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963564
Clone id TST39A01NGRL0016_O01
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_O01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCGCTTGTTGCTCTCTCGTAGACGATGGCCATGGCGGCATCTAAGGCTATCTCTGCCTT
GAAGGGCACTAGGTTCCTGATCATCCTCACTGCGACTAATCTGTTGCAGGGAATGGAGTG
CCTCACCTTTAATGGCGAAGACAAATGAAGCGGGGGAAGGCATCTCCTCTATGACACCTT
CCTCTCACTCGCTAAAGTCTCCCGCTATCGCTAACTTCTACAGAAACTATCGTCGGGAGC
CTATCCCCAATATTTCAGAACTGGATTTGGAGGATGAAGTCAATCCAATTGACGTGAACC
CTAATAACATGATGCACGATGGGGATCCATTGGCCATTAAAGCTGTTATCAAAGATGTTA
TGCCTGTAGGGTACTTCCTCGGCTTGCCCTCATGCAGAGATGGCTACCTTCCCGCAAATC
ACCTTGGATTTACCGGGGGGCTTGCAATTCTTCTGCGGTTGTTCAAAGAAGGT
■■Homology search results ■■ -
sp_hit_id Q74CB9
Definition sp|Q74CB9|PYRD_GEOSL Dihydroorotate dehydrogenase OS=Geobacter sulfurreducens
Align length 73
Score (bit) 33.1
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963564|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O01, 5'
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q74CB9|PYRD_GEOSL Dihydroorotate dehydrogenase OS=Geobacter s...    33   0.64 
sp|O09131|GSTO1_MOUSE Glutathione S-transferase omega-1 OS=Mus m...    31   3.2  
sp|A2ARI4|LGR4_MOUSE Leucine-rich repeat-containing G-protein co...    30   4.2  
sp|Q39UK4|PYRD_GEOMG Dihydroorotate dehydrogenase OS=Geobacter m...    30   5.4  
sp|Q7L4E1|FA73B_HUMAN Protein FAM73B OS=Homo sapiens GN=FAM73B P...    30   5.4  
sp|Q31F19|SYFB_THICR Phenylalanyl-tRNA synthetase beta chain OS=...    30   7.1  
sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2 (...    30   7.1  
sp|Q9Y4G8|RPGF2_HUMAN Rap guanine nucleotide exchange factor 2 O...    30   7.1  
sp|Q46E46|HIS8_METBF Histidinol-phosphate aminotransferase OS=Me...    30   7.1  
sp|P40223|CSF3R_MOUSE Granulocyte colony-stimulating factor rece...    30   7.1  
sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03...    29   9.3  

>sp|Q74CB9|PYRD_GEOSL Dihydroorotate dehydrogenase OS=Geobacter
           sulfurreducens GN=pyrD PE=3 SV=1
          Length = 305

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +3

Query: 162 ISSMTPSSHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPN--NMMHDG---- 323
           +    P   ++ +P I NF+ N   E       LDL  EV  +++N +  N+ H G    
Sbjct: 84  VEKKVPFLRTVATPVIVNFFGNTLEEYAELAERLDLIPEVAAVEINISCPNVKHGGIVFG 143

Query: 324 -DPLAIKAVIKDV 359
            DP A  +V+K V
Sbjct: 144 TDPKAAYSVVKAV 156


>sp|O09131|GSTO1_MOUSE Glutathione S-transferase omega-1 OS=Mus
           musculus GN=Gsto1 PE=2 SV=2
          Length = 240

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 171 MTPSSHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPNN 308
           MT  S S   P IA+F R+ R+E  PN+ E  LE+E   ++   +N
Sbjct: 115 MTLESFSKVPPLIASFVRSKRKEDSPNLREA-LENEFKKLEEGMDN 159


>sp|A2ARI4|LGR4_MOUSE Leucine-rich repeat-containing G-protein
           coupled receptor 4 OS=Mus musculus GN=Lgr4 PE=2 SV=1
          Length = 951

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
 Frame = +3

Query: 273 DEVNPIDVNPNNMMHDGDPLAIKAV--IKD---------VMPVGYFLGLPSCRDGYLPAN 419
           D +  +D+N NN+  D  P AIKA+  +K+         V+P G F G P  R  +L  N
Sbjct: 225 DNLETLDLNYNNL--DEFPQAIKALPSLKELGFHSNSISVIPDGAFAGNPLLRTIHLYDN 282

Query: 420 HLGFTGGLA 446
            L F G  A
Sbjct: 283 PLSFVGNSA 291


>sp|Q39UK4|PYRD_GEOMG Dihydroorotate dehydrogenase OS=Geobacter
           metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
           GN=pyrD PE=3 SV=1
          Length = 305

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +3

Query: 162 ISSMTPSSHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPN--NMMHDG---- 323
           I    P   ++ +PAI NF+ N   E       LD   EV  +++N +  N+ H G    
Sbjct: 84  IEKKVPFLRTVNTPAIVNFFGNTVEEYAELAERLDKIPEVAGMEINISCPNVKHGGIVFG 143

Query: 324 -DPLAIKAVIKDV 359
            +P A  +V+K V
Sbjct: 144 TEPKAAYSVVKAV 156


>sp|Q7L4E1|FA73B_HUMAN Protein FAM73B OS=Homo sapiens GN=FAM73B PE=1
           SV=1
          Length = 593

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +3

Query: 135 AKTNEAGEGISSMTPSSHSLKSPAIANFYRNYRREPIPNISEL----DLEDEVNPIDVNP 302
           +K+N+   GISS+ PS HS  S ++A+        P    S L     +E+ +   D N 
Sbjct: 114 SKSNDTLSGISSIEPSKHSGSSHSVASMMAVNSSSPTAACSGLWDARGMEESLTTSDGNA 173

Query: 303 NNMMHDGDPLAIKAVIK 353
            ++   G  L  +A+ K
Sbjct: 174 ESLYMQGMELFEEALQK 190


>sp|Q31F19|SYFB_THICR Phenylalanyl-tRNA synthetase beta chain
           OS=Thiomicrospira crunogena (strain XCL-2) GN=pheT PE=3
           SV=1
          Length = 793

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 261 LDLEDEVNPIDVNPNNMMHDGDPLAIKAVIKDVMPVG 371
           LDL+D+V  +D+ PN      D L+I  V +DV  +G
Sbjct: 152 LDLDDQVIDVDLTPNR----ADCLSIAGVARDVAAIG 184


>sp|Q8CHG7|RPGF2_MOUSE Rap guanine nucleotide exchange factor 2
           (Fragment) OS=Mus musculus GN=Rapgef2 PE=1 SV=1
          Length = 1138

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = +2

Query: 41  SKAISALKGTRFLIILTATNLLQGMECLTFNGEDK*SGGRHLLYDTFLSLAKVSRY 208
           SKA+  L+    L I   TNL    E LT   E+K +G  HL       + K SRY
Sbjct: 89  SKAMEILRNNTHLSITVKTNLFVFKELLTRLSEEKRNGAPHL--PKIGDIKKASRY 142


>sp|Q9Y4G8|RPGF2_HUMAN Rap guanine nucleotide exchange factor 2
           OS=Homo sapiens GN=RAPGEF2 PE=1 SV=1
          Length = 1499

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = +2

Query: 41  SKAISALKGTRFLIILTATNLLQGMECLTFNGEDK*SGGRHLLYDTFLSLAKVSRY 208
           SKA+  L+    L I   TNL    E LT   E+K +G  HL       + K SRY
Sbjct: 447 SKAMEILRNNTHLSITVKTNLFVFKELLTRLSEEKRNGAPHL--PKIGDIKKASRY 500


>sp|Q46E46|HIS8_METBF Histidinol-phosphate aminotransferase
           OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
           GN=hisC PE=3 SV=1
          Length = 366

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 25/85 (29%), Positives = 37/85 (43%)
 Frame = +3

Query: 117 SASPLMAKTNEAGEGISSMTPSSHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDV 296
           +A+P          GI++++   H  KS  IA   R Y +E IP         +V P   
Sbjct: 251 AATPFSVSLPALKAGIAALSDVEHRKKSIEIAREGRKYLKEKIP--------FKVYPSQA 302

Query: 297 NPNNMMHDGDPLAIKAVIKDVMPVG 371
             N ++ D  PL  KAV + +M  G
Sbjct: 303 --NFVLVDVSPLKAKAVTQSLMKKG 325


>sp|P40223|CSF3R_MOUSE Granulocyte colony-stimulating factor
           receptor OS=Mus musculus GN=Csf3r PE=1 SV=1
          Length = 837

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 192 LKSPAIANFYRNYRREPIPNISELDLEDEVNPIDV 296
           + SP+  N Y+++  EP  NI+ + L+D +NP  +
Sbjct: 468 MSSPSYNNSYKSWMIEPNGNITGILLKDNINPFQL 502
tr_hit_id A9UWM5
Definition tr|A9UWM5|A9UWM5_MONBE Predicted protein OS=Monosiga brevicollis
Align length 59
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963564|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O01, 5'
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9UWM5|A9UWM5_MONBE Predicted protein OS=Monosiga brevicollis...    35   1.9  
tr|Q8CIU5|Q8CIU5_MOUSE Myotubularin-related 1 isoform D (Fragmen...    35   2.4  
tr|Q91EY0|Q91EY0_GVCP ORF75 similar to AcMNPV ORF119 OS=Cydia po...    34   4.2  
tr|Q7T9V2|Q7T9V2_GVAO ORF_63 OS=Adoxophyes orana granulovirus GN...    34   4.2  
tr|Q1V9U3|Q1V9U3_VIBAL Putative uncharacterized protein OS=Vibri...    34   4.2  
tr|A2E2Y7|A2E2Y7_TRIVA Putative uncharacterized protein OS=Trich...    34   4.2  
tr|Q8CIU3|Q8CIU3_MOUSE Myotubularin-related 1 isoform F (Fragmen...    33   5.4  
tr|A7HMB7|A7HMB7_FERNB DNA polymerase III, beta subunit OS=Fervi...    33   5.4  
tr|Q0CBG9|Q0CBG9_ASPTN Putative uncharacterized protein OS=Asper...    33   5.4  
tr|B2W5W7|B2W5W7_PYRTR Predicted protein OS=Pyrenophora tritici-...    33   7.1  
tr|Q26080|Q26080_PLAMG Myosin heavy chain OS=Placopecten magella...    33   9.3  
tr|B7PZY6|B7PZY6_IXOSC Putative uncharacterized protein (Fragmen...    33   9.3  

>tr|A9UWM5|A9UWM5_MONBE Predicted protein OS=Monosiga brevicollis
           GN=24507 PE=4 SV=1
          Length = 1082

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +3

Query: 156 EGISSMTPSSHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPNNMMHDGDPL 332
           E +  +  S  S  +PAIA   + ++R+ I N+ +  LE    P+D+   N++H  DP+
Sbjct: 109 ENVGILKTSVASSVAPAIAVRQQFFQRQQIQNVLQDHLEARPGPLDLMSANILHPRDPI 167


>tr|Q8CIU5|Q8CIU5_MOUSE Myotubularin-related 1 isoform D (Fragment)
           OS=Mus musculus GN=Mtmr1 PE=2 SV=1
          Length = 149

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
 Frame = +3

Query: 183 SHSLKSPAIANFYRNYRREPIPNISE----LDLEDEVN--PIDVNPNNMMHDGDPLA--- 335
           S S+ S  ++  Y+ +RR    NI +    L+LE+E N  P +   +  + DG+ LA   
Sbjct: 18  SGSVTSENVSRDYKVFRRPDTRNIHKARQRLELEEEHNGYPSEAEADQALRDGNKLAQME 77

Query: 336 ---------IKAVIKDVMPVGYFLGLPS 392
                    IKA++KDV+ +  F+G  S
Sbjct: 78  EAPLFPGESIKAIVKDVIYICPFMGAVS 105


>tr|Q91EY0|Q91EY0_GVCP ORF75 similar to AcMNPV ORF119 OS=Cydia
           pomonella granulosis virus GN=orf75 PE=4 SV=1
          Length = 538

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 327 PLAIKAVIKDVMPVGYFLGLPSCRDGYLPANHLGF 431
           P     V++DVM    F   P CRDG+LPA H  F
Sbjct: 198 PYCRPQVMRDVMLDPNFFHRPPCRDGFLPAEHPAF 232


>tr|Q7T9V2|Q7T9V2_GVAO ORF_63 OS=Adoxophyes orana granulovirus
           GN=ORF_63 PE=4 SV=1
          Length = 533

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
 Frame = +3

Query: 252 ISELDLEDEVN-PIDVNPNNMMHD---------------------GDPLAIKAVIKDVMP 365
           +++L++ D+   P+   PN M+ D                       P     V++DVM 
Sbjct: 152 VTQLNMYDDCTFPVGCQPNGMIVDIYTSPIMCVCDNGYVPELSETNTPYCRPLVMRDVML 211

Query: 366 VGYFLGLPSCRDGYLPANHLGF 431
              F   P CRDG+LPA H  F
Sbjct: 212 SLDFYHRPPCRDGFLPAQHPAF 233


>tr|Q1V9U3|Q1V9U3_VIBAL Putative uncharacterized protein OS=Vibrio
           alginolyticus 12G01 GN=V12G01_08830 PE=4 SV=1
          Length = 317

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +3

Query: 222 RNYRREPIPNISELDLEDEVNPIDVNPNNMMHDGDPLAIKAVIKDVMPVGYFLGLPSCRD 401
           + YR+EP+P +   D+   + PI VN   + + GD +  +  +KD    G+ L     +D
Sbjct: 193 KRYRKEPMPTVLMGDMNQPITPISVNSALVSNTGDSVT-ELQLKD----GWLLQSAPLKD 247

Query: 402 GYLPANHLGFTGG 440
              PA H  F+ G
Sbjct: 248 -ERPATHYHFSTG 259


>tr|A2E2Y7|A2E2Y7_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_404690 PE=4 SV=1
          Length = 593

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 174 TPSSHSL-KSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPNNMMHDGDPLAIKAVI 350
           TPS  +   +P I N +RN   EP PN+ +  L  E+ P     N+      PLAI  V 
Sbjct: 353 TPSKFTYYATPLIRNPHRN--DEPKPNLEKFSLIHEIKPQTTRTNSPTRSNIPLAITNVP 410

Query: 351 KD 356
           KD
Sbjct: 411 KD 412


>tr|Q8CIU3|Q8CIU3_MOUSE Myotubularin-related 1 isoform F (Fragment)
           OS=Mus musculus GN=Mtmr1 PE=2 SV=1
          Length = 140

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
 Frame = +3

Query: 183 SHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPNNMMHDGDPLA--------- 335
           S S+ S  ++  Y+ +RR   P+  EL+ E    P +   +  + DG+ LA         
Sbjct: 18  SGSVTSENVSRDYKVFRR---PDTRELEEEHNGYPSEAEADQALRDGNKLAQMEEAPLFP 74

Query: 336 ---IKAVIKDVMPVGYFLGLPS 392
              IKA++KDV+ +  F+G  S
Sbjct: 75  GESIKAIVKDVIYICPFMGAVS 96


>tr|A7HMB7|A7HMB7_FERNB DNA polymerase III, beta subunit
           OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
           5306 / Rt17-B1) GN=Fnod_1203 PE=4 SV=1
          Length = 367

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +3

Query: 129 LMAKTNEAGEGISSMTPSSHSLKSPAIANFYRNYRREPIPNISELDLE----DEVNPIDV 296
           L +++++ GE + S+  +        I NF   +  EP+ +I E ++E    D ++P+ +
Sbjct: 293 LTSQSSDFGEAVESIPITKDG--EDLIVNFNPKFLNEPLKHIDEKEIEFNFVDNLSPLQI 350

Query: 297 NPNNM 311
           NP N+
Sbjct: 351 NPRNV 355


>tr|Q0CBG9|Q0CBG9_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_08965
           PE=4 SV=1
          Length = 1446

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +3

Query: 165 SSMTPSSHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPNNMMHDGD 326
           ++M P++   ++P   + Y+  +R P P++ E  L D+VNP D N N+    GD
Sbjct: 6   TAMNPNTSPPRTPPAGSNYKASKRHPRPSVRETFL-DDVNPTD-NTNSSNESGD 57


>tr|B2W5W7|B2W5W7_PYRTR Predicted protein OS=Pyrenophora
           tritici-repentis (strain Pt-1C-BFP) GN=PTRG_06125 PE=4
           SV=1
          Length = 93

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
 Frame = +3

Query: 132 MAKTNEAGEGISSMTPSSHSLKSPAIANFYRNYRREPIPNISELDLEDEVNPIDVNPNNM 311
           M+ TNE G+G      +SH+    A+ N      +E  P   E  L + ++P   NPN+ 
Sbjct: 1   MSSTNEHGQG------ASHATGQSAVPNKV----QEAAPKGLEEGLPESIHPTGSNPNSQ 50

Query: 312 -------MHDGDPLAIKAVIKDVMPVGYFLGLPS 392
                  ++DG+   +   +++++P      LP+
Sbjct: 51  STSKTHALNDGEDSVVPKKVQEIVPESVERALPN 84