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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963572
Clone id TST39A01NGRL0016_O09
Library
Length 617
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_O09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCGGAGCTGAAGGTGAGCCTGAAGGAGGAGGAGGAGGGGCGAGCTATGAGAAGCGGTGC
CATGGTTGTGCATGTGGGCAGCATGCCTCTGCGTGCTCCCCCGGGCCCAGCACGATGGGC
ACTTGCATCAGCTGATCGCTTCCTGTCCATCCAACACTTCTATACGATACTACAGCCCAT
CTCAGGCAGCAGCCCGGCATAATATTGGAACGGACCATTGCATGCTTGCCAACGCGGAGA
TGCTGGAGGGTTGGAGTGACCAAAGACTGCATAAGCATGAAGGATGCAGTTGAGTTCAAT
AGGAATTGGGACATGTCATTACAGCTTTGCAAGCATGATTGCCGGCACCATACAGATGCA
TTCGTGGAGTTTTTAACTGGCGAGAAAGACATACTGCAGACGCTAAAGAATACTGCTCAC
AGCAAGCTTATTCATGAGGGCAGTTAACATTTCTCTAATATTAAGATTTTTTTGCTAATT
GTAGAGTTTGCTTTAATTTCAGCTTTTTCCAGCATTTCTGTCAGCCAATTGTGGATGCGT
AGTTGAAGAGAACAGCTCAAGCTACTGTCTGTGGTGAGCTGGGTTTGAAGGTATAGCATG
GGCTTGATCCTCTGCTG
■■Homology search results ■■ -
sp_hit_id O31669
Definition sp|O31669|MTND_BACSU Acireductone dioxygenase OS=Bacillus subtilis
Align length 79
Score (bit) 32.7
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963572|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O09, 5'
         (617 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O31669|MTND_BACSU Acireductone dioxygenase OS=Bacillus subtil...    33   1.5  
sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protei...    32   3.4  
sp|A9BUC8|URED_DELAS Urease accessory protein ureD OS=Delftia ac...    31   4.5  
sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protei...    31   5.8  
sp|Q0BHN2|URED_BURCM Urease accessory protein ureD OS=Burkholder...    30   7.6  
sp|O95980|RECK_HUMAN Reversion-inducing cysteine-rich protein wi...    30   9.9  

>sp|O31669|MTND_BACSU Acireductone dioxygenase OS=Bacillus subtilis
           GN=mtnD PE=3 SV=1
          Length = 178

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 27/79 (34%), Positives = 38/79 (48%)
 Frame = +1

Query: 139 LPVHPTLLYDTTAHLRQQPGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDMS 318
           LP H +  YD T   +QQ     E  I  + TRR ++    +D IS+ D+   N   D  
Sbjct: 39  LPEHLSEKYDLTEEEKQQILDTFETEIKDISTRRGYK---AQDVISLSDS---NPKLDEL 92

Query: 319 LQLCKHDCRHHTDAFVEFL 375
           L+  K +  HHTD  V F+
Sbjct: 93  LENFKRE-HHHTDDEVRFI 110


>sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protein 13B
            OS=Mus musculus GN=Vps13b PE=2 SV=2
          Length = 4013

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 380  PVKNSTNASVWCRQSCLQSCNDMSQFLLNSTASFMLMQSLVTPTLQHLRVGKHAMVRSNI 201
            P  NS+   VWC    L+  + + Q ++  +  F++   L  P + HL      +  + I
Sbjct: 2807 PTSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQI 2866

Query: 200  MPG 192
            +PG
Sbjct: 2867 IPG 2869


>sp|A9BUC8|URED_DELAS Urease accessory protein ureD OS=Delftia
           acidovorans (strain DSM 14801 / SPH-1) GN=ureD PE=3 SV=1
          Length = 305

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 197 PGCCLRWAVVSYRSVGWTGSDQLMQVPIVLGPGEHAEACCPHAQPWHR 54
           PG C   AV+ +   G  G DQL Q+ + + PG HA    P A  W++
Sbjct: 55  PGIC--HAVLLHPPGGVAGGDQL-QIDVTVEPGAHALLTTPGATRWYK 99


>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B
            OS=Homo sapiens GN=VPS13B PE=1 SV=1
          Length = 4022

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 380  PVKNSTNASVWCRQSCLQSCNDMSQFLLNSTASFMLMQSLVTPTLQHLRVGKHAMVRSNI 201
            P  NS+   VWC    L+  + + Q ++  +  F++   L  P + HL      +  + I
Sbjct: 2814 PSSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQI 2873

Query: 200  MPG 192
            +PG
Sbjct: 2874 IPG 2876


>sp|Q0BHN2|URED_BURCM Urease accessory protein ureD OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=ureD PE=3 SV=1
          Length = 291

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -1

Query: 257 TPTLQHLRVGKHAMVRSNIMPGCCLRWAVVSYRSVGWTGSDQLMQVPIVLGPGEHAEACC 78
           T  +  L  G   + R     G  +  AV+ +   G  G DQL  + I LG G HA    
Sbjct: 34  TTLVHRLHDGPLRVQRPLYPEGDAICHAVIVHPPGGVAGGDQL-DIGIALGDGTHAVLTT 92

Query: 77  PHAQPWHR 54
           P A  W++
Sbjct: 93  PGATKWYK 100


>sp|O95980|RECK_HUMAN Reversion-inducing cysteine-rich protein with
           Kazal motifs OS=Homo sapiens GN=RECK PE=1 SV=1
          Length = 971

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 398 CSMSFSPVKNSTNASVWCRQSC---LQSCNDMSQFLLNSTASFMLMQSLVTPT 249
           CS+   P  + +  S+ C+  C   L+ C D ++F  + TA  +    L++PT
Sbjct: 415 CSLQIKPCHSKSRGSIICKSDCVEILKKCGDQNKFPEDHTAESIC--ELLSPT 465
tr_hit_id A9SJ12
Definition tr|A9SJ12|A9SJ12_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 54
Score (bit) 67.0
E-value 9.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963572|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O09, 5'
         (617 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SJ12|A9SJ12_PHYPA Predicted protein (Fragment) OS=Physcomit...    67   9e-13
tr|Q5S4Y6|Q5S4Y6_ARATH Putative uncharacterized protein OS=Arabi...    75   2e-12
tr|Q6RF56|Q6RF56_ARATH Putative uncharacterized protein OS=Arabi...    74   9e-12
tr|Q9SJ80|Q9SJ80_ARATH Putative uncharacterized protein At2g0479...    64   2e-11
tr|B8AEP2|B8AEP2_ORYSI Putative uncharacterized protein OS=Oryza...    57   4e-11
tr|Q6RF55|Q6RF55_ARATH Putative uncharacterized protein OS=Arabi...    64   5e-09
tr|A7PX25|A7PX25_VITVI Chromosome chr12 scaffold_36, whole genom...    63   1e-08
tr|B6U586|B6U586_MAIZE Putative uncharacterized protein OS=Zea m...    48   7e-08
tr|Q0DZZ8|Q0DZZ8_ORYSJ Os02g0588600 protein OS=Oryza sativa subs...    39   7e-06
tr|A4RUR7|A4RUR7_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.008
tr|A8I4E6|A8I4E6_CHLRE Predicted protein OS=Chlamydomonas reinha...    38   0.54 
tr|Q4QI21|Q4QI21_LEIMA Putative uncharacterized protein OS=Leish...    35   3.5  
tr|A3A8I0|A3A8I0_ORYSJ Putative uncharacterized protein OS=Oryza...    34   6.0  
tr|Q5K9K2|Q5K9K2_CRYNE Mitochondrion organization and biogenesis...    34   6.0  

>tr|A9SJ12|A9SJ12_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_19022 PE=4 SV=1
          Length = 139

 Score = 67.0 bits (162), Expect(2) = 9e-13
 Identities = 29/54 (53%), Positives = 40/54 (74%)
 Frame = +1

Query: 193 PGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDMSLQLCKHDCRHHT 354
           PG+ILERT++ LP +RCW VG  K  +S++DAV+F+R +   L L  +DCRHHT
Sbjct: 82  PGVILERTLSRLPNQRCWWVGEMKPGLSLEDAVKFSRGYSSELSLGINDCRHHT 135



 Score = 30.0 bits (66), Expect(2) = 9e-13
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 68  VHVGSMPLRAPPGPAR--WALASADRFLSIQHFYTILQPI 181
           V+V S+PLRAP        A+   + F   QHF TI++P+
Sbjct: 10  VYVASVPLRAPKLAQEIFEAVKDLEMFSEFQHFMTIVKPV 49


>tr|Q5S4Y6|Q5S4Y6_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 128

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 31/71 (43%), Positives = 51/71 (71%)
 Frame = +1

Query: 193 PGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDMSLQLCKHDCRHHTDAFVEF 372
           PG++L+R +  +P +RCW VG +K   +M+ A+EFN++W+  L++  HDCRH+T+  V+ 
Sbjct: 55  PGVVLQRRLKNVPRQRCWMVGPSKGNDAMEMAMEFNKSWETDLRVGFHDCRHYTNELVQH 114

Query: 373 LTGEKDILQTL 405
           LTGE  I++ L
Sbjct: 115 LTGEMQIVERL 125


>tr|Q6RF56|Q6RF56_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At2g04790 PE=2 SV=1
          Length = 128

 Score = 73.6 bits (179), Expect = 9e-12
 Identities = 30/71 (42%), Positives = 50/71 (70%)
 Frame = +1

Query: 193 PGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDMSLQLCKHDCRHHTDAFVEF 372
           PG++L+R +  +P +RCW VG +K   +M+  +EFN++W+  L++  HDCRH+T+  V+ 
Sbjct: 55  PGVVLQRRLKNVPRQRCWMVGPSKGNDAMEMXMEFNKSWETDLRVGFHDCRHYTNELVQH 114

Query: 373 LTGEKDILQTL 405
           LTGE  I++ L
Sbjct: 115 LTGEMQIVERL 125


>tr|Q9SJ80|Q9SJ80_ARATH Putative uncharacterized protein At2g04790
           OS=Arabidopsis thaliana GN=At2g04790 PE=4 SV=1
          Length = 145

 Score = 64.3 bits (155), Expect(2) = 2e-11
 Identities = 25/58 (43%), Positives = 42/58 (72%)
 Frame = +1

Query: 193 PGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDMSLQLCKHDCRHHTDAFV 366
           PG++L+R +  +P +RCW VG +K   +M+ A+EFN++W+  L++  HDCRH+T+  V
Sbjct: 84  PGVVLQRRLKNVPRQRCWMVGPSKGNDAMEMAMEFNKSWETDLRVGFHDCRHYTNGLV 141



 Score = 28.1 bits (61), Expect(2) = 2e-11
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 53  SGAMVVHVGSMPLRAPPGPAR--WALASADRFLSIQHFYTILQPIS 184
           S    ++V ++PL+A  GP +   ++A +    ++QHF  +++P S
Sbjct: 14  SSGDTIYVAAVPLKAAAGPPQLIMSMAYSLNISNLQHFMVLIKPSS 59


>tr|B8AEP2|B8AEP2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07860 PE=4 SV=1
          Length = 176

 Score = 57.4 bits (137), Expect(2) = 4e-11
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
 Frame = +1

Query: 193 PGIILERTIACLPTRRCWRVGVTKD------CISMKDAVEFNRNWDMSLQLCKHDCRHHT 354
           PG++  RT+  +P  RCW VG  +         ++  A  F   W   L + +HDCR  T
Sbjct: 91  PGVVRRRTLRRVPDTRCWLVGHHRSGGGAGAAAAVLAADAFTARWPTDLVVGRHDCRDFT 150

Query: 355 DAFVEFLTGEKDILQTLKNTA 417
           +  VE LTGEK +L  L+++A
Sbjct: 151 NGLVEELTGEKRVLDALRSSA 171



 Score = 34.3 bits (77), Expect(2) = 4e-11
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +2

Query: 59  AMVVHVGSMPLRAPPGPARWALASADRFL---SIQHFYTILQP 178
           A  V+V ++PLR P GPA+ AL SA   L    +QHF  +L+P
Sbjct: 17  AAAVYVAAVPLRGPKGPAQ-ALMSAGYSLGLWDLQHFMVLLRP 58


>tr|Q6RF55|Q6RF55_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At2g04790 PE=4 SV=1
          Length = 116

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 25/58 (43%), Positives = 42/58 (72%)
 Frame = +1

Query: 193 PGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDMSLQLCKHDCRHHTDAFV 366
           PG++L+R +  +P +RCW VG +K   +M+ A+EFN++W+  L++  HDCRH+T+  V
Sbjct: 55  PGVVLQRRLKNVPRQRCWMVGPSKGNDAMEMAMEFNKSWETDLRVGFHDCRHYTNGLV 112


>tr|A7PX25|A7PX25_VITVI Chromosome chr12 scaffold_36, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025873001
           PE=4 SV=1
          Length = 164

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
 Frame = +1

Query: 142 PVHPTLLYDTTAHL--RQQPGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDM 315
           P  P  +Y   A L  R   G +LER +  LP  + W +G +++   ++ A  FN+ W  
Sbjct: 70  PKDPENVYVALAALSGRAVQGAVLERKLTKLPRSKWWLIGCSRED-GVEAAHRFNKAWHT 128

Query: 316 SLQLCKHDCRHHTDAFVEFLTGEKDILQTLKNT 414
            L++  HDCR +T+  VE+LTGEK +L+ L+++
Sbjct: 129 DLKIGYHDCRDYTNGLVEYLTGEKQVLKRLRSS 161


>tr|B6U586|B6U586_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 144

 Score = 47.8 bits (112), Expect(2) = 7e-08
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +1

Query: 184 RQQPGIILERTIACLPTRRCWRVGVTKDCISMKDAVEFNRNWDMSLQLCKHDCRHHTDAF 363
           R+ PG++  RT+  +P  RCW VG   D +    A  F+  W   L + +HDCR +T+  
Sbjct: 82  REIPGVVRRRTLRRVPDGRCWLVGHCCDAVGA--ATRFSERWTTGLVVGEHDCRDYTNGN 139

Query: 364 VEFLT 378
           +  L+
Sbjct: 140 LSALS 144



 Score = 32.7 bits (73), Expect(2) = 7e-08
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +2

Query: 68  VHVGSMPLRAPPGPARWALASADRFL---SIQHFYTILQP 178
           V+V ++PLRAP GPA+  L SA   L    +QHF  +L+P
Sbjct: 14  VYVAAVPLRAPKGPAQ-LLMSAGYSLGMWDLQHFMVLLRP 52


>tr|Q0DZZ8|Q0DZZ8_ORYSJ Os02g0588600 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0588600 PE=2 SV=1
          Length = 157

 Score = 39.3 bits (90), Expect(2) = 7e-06
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 193 PGIILERTIACLPTRRCWRVGVTKD------CISMKDAVEFNRNWDMSLQLCKHDCRHHT 354
           PG++  RT+  +P  RCW VG  +         ++  A  F   W   L + +HDCR  T
Sbjct: 91  PGVVRRRTLRRVPDTRCWLVGHHRSGGGAGAAAAVLAADAFTARWPTDLVVGRHDCRDFT 150

Query: 355 DAF 363
           + +
Sbjct: 151 NGW 153



 Score = 34.3 bits (77), Expect(2) = 7e-06
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +2

Query: 59  AMVVHVGSMPLRAPPGPARWALASADRFL---SIQHFYTILQP 178
           A  V+V ++PLR P GPA+ AL SA   L    +QHF  +L+P
Sbjct: 17  AAAVYVAAVPLRGPKGPAQ-ALMSAGYSLGLWDLQHFMVLLRP 58


>tr|A4RUR7|A4RUR7_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_30715 PE=4 SV=1
          Length = 194

 Score = 43.9 bits (102), Expect = 0.008
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
 Frame = +1

Query: 196 GIILERTIACLPTRRCWRVGVTKDCISMKDAVE-----FNRNWDM-SLQLCKHDCRHHTD 357
           G++  R +A +P RRC RVG T+  +  + A+E     F+  WD  +L+L  +DCR+H+ 
Sbjct: 53  GVVRSRRLAGVPGRRCCRVGGTRAGLGGRIAIEAAIAAFHERWDADALRLGTNDCRNHSV 112

Query: 358 AFVEFLT 378
               +LT
Sbjct: 113 ELARWLT 119