DK963577 |
Clone id |
TST39A01NGRL0016_O14 |
Library |
TST39 |
Length |
636 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_O14. 5' end sequence. |
Accession |
DK963577 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL914Contig1 |
Sequence |
CGCCCGCACACTCCACAAAAAACATTTCGTTCGTTTCAGTGTACTACCTACCGGTGCTAC TGCACATTCTGCTCTCCCTCTCTCGAAGACATTCACGCACCCGCCACAGACTCTCTCTCT TCGTTGCATTTGCGGCCAAGGGTTCGTCTAAGGAGACATGGAGTCTGCAACCCTTGCCGG GGGCTCTTCGTGCAGAGTTTCGGAGCATTCTGGTTTGCTGGACGGTTCTGGGCTTCGCCC TGCTCGAGCCCACCTCAATCGGCTTCTGCATCACCATCGTCCTTTACAAAGCCATCCTAC CAGCAGGCTTGAGGTATATGCAGGTGTGGGAAATACATTTGGAAATTTGTTTCGAGTGAC CACATATGGCGAGTCACATGGTGGAGGTGTTGGTTGTGTCATTGATGGGGTTCCTCCAAG ACTACCGCTCACTGAAGCAGACATGCAGTTTGAGCTGGATAGGAGGAGGCCAGGTCAAAG CCGCATCACAACTCCTCGAAAGGAGACCGATACCTGCTCAATATTGTCTGGTGTTGCGGA CGGTCTTACCTTGGGAACTCCAATTGCCGTGAACGTGCCAAATACAGATCAAAGAGGAGG GGACTATCAAGAAATGTCGCTTGCCTACAGACCATC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42885 |
Definition |
sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum |
Align length |
110 |
Score (bit) |
188.0 |
E-value |
2.0e-47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963577|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0016_O14, 5' (636 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=So... 188 2e-47 sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=So... 186 9e-47 sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Coryd... 172 1e-42 sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabi... 172 2e-42 sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elonga... 160 5e-39 sp|Q5N2I0|AROC_SYNP6 Chorismate synthase OS=Synechococcus sp. (s... 157 3e-38 sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus ... 154 5e-37 sp|B0C2W2|AROC_ACAM1 Chorismate synthase OS=Acaryochloris marina... 153 8e-37 sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (s... 150 4e-36 sp|Q110N5|AROC_TRIEI Chorismate synthase OS=Trichodesmium erythr... 150 5e-36 sp|Q3MFM3|AROC_ANAVT Chorismate synthase OS=Anabaena variabilis ... 149 1e-35 sp|Q8YYP9|AROC_ANASP Chorismate synthase OS=Anabaena sp. (strain... 149 1e-35 sp|Q2JLD4|AROC_SYNJB Chorismate synthase OS=Synechococcus sp. GN... 148 3e-35 sp|Q2JXD0|AROC_SYNJA Chorismate synthase OS=Synechococcus sp. (s... 147 6e-35 sp|B0JWQ2|AROC_MICAN Chorismate synthase OS=Microcystis aerugino... 145 1e-34 sp|A5GIL9|AROC_SYNPW Chorismate synthase OS=Synechococcus sp. (s... 142 1e-33 sp|Q0ID82|AROC_SYNS3 Chorismate synthase OS=Synechococcus sp. (s... 141 2e-33 sp|A5GW34|AROC_SYNR3 Chorismate synthase OS=Synechococcus sp. (s... 140 5e-33 sp|Q0BVN0|AROC_GRABC Chorismate synthase OS=Granulibacter bethes... 139 1e-32 sp|A5FY49|AROC_ACICJ Chorismate synthase OS=Acidiphilium cryptum... 138 2e-32 sp|Q3AMV2|AROC_SYNSC Chorismate synthase OS=Synechococcus sp. (s... 137 4e-32 sp|Q7U9F0|AROC_SYNPX Chorismate synthase OS=Synechococcus sp. (s... 137 5e-32 sp|Q2RR25|AROC_RHORT Chorismate synthase OS=Rhodospirillum rubru... 137 6e-32 sp|A9H0U2|AROC_GLUDA Chorismate synthase OS=Gluconacetobacter di... 136 8e-32 sp|A1KV89|AROC_NEIMF Chorismate synthase OS=Neisseria meningitid... 136 1e-31 sp|A9M1Q2|AROC_NEIM0 Chorismate synthase OS=Neisseria meningitid... 136 1e-31 sp|Q5F756|AROC_NEIG1 Chorismate synthase OS=Neisseria gonorrhoea... 136 1e-31 sp|Q9JY99|AROC_NEIMB Chorismate synthase OS=Neisseria meningitid... 135 1e-31 sp|Q9JT81|AROC_NEIMA Chorismate synthase OS=Neisseria meningitid... 135 1e-31 sp|Q3AUR6|AROC_SYNS9 Chorismate synthase OS=Synechococcus sp. (s... 135 2e-31
>sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum GN=CS2 PE=2 SV=1 Length = 431
Score = 188 bits (477), Expect = 2e-47 Identities = 90/110 (81%), Positives = 96/110 (87%) Frame = +2
Query: 305 RLEVYAGVGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSR 484 RLE+ A GNTFGN FRVTT+GESHGGGVGC+IDG PPRLPL+E+DMQ ELDRRRPGQSR Sbjct: 43 RLEIQAA-GNTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSR 101
Query: 485 ITTPRKETDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 ITTPRKETDTC I SG ADGLT G+PI V VPNTDQRG DY EMSLAYRP Sbjct: 102 ITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRP 151
>sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1 Length = 440
Score = 186 bits (472), Expect = 9e-47 Identities = 89/110 (80%), Positives = 96/110 (87%) Frame = +2
Query: 305 RLEVYAGVGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSR 484 RLE+ A G+TFGN FRVTT+GESHGGGVGC+IDG PPRLPL+E+DMQ ELDRRRPGQSR Sbjct: 49 RLEIQAA-GSTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSR 107
Query: 485 ITTPRKETDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 ITTPRKETDTC I SG ADGLT G+PI V VPNTDQRG DY EMSLAYRP Sbjct: 108 ITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRP 157
>sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Corydalis sempervirens PE=1 SV=1 Length = 447
Score = 172 bits (437), Expect = 1e-42 Identities = 78/102 (76%), Positives = 90/102 (88%) Frame = +2
Query: 329 GNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKET 508 G++FG +F+VTTYGESHGGGVGCVIDG PPR P++EAD+Q +LDRRRPGQSRITTPRKET Sbjct: 60 GSSFGKVFQVTTYGESHGGGVGCVIDGCPPRFPISEADIQSDLDRRRPGQSRITTPRKET 119
Query: 509 DTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 DTC I SGVADG T G+PI ++VPNTDQRG DY EM+ AYRP Sbjct: 120 DTCKIYSGVADGFTTGSPIHISVPNTDQRGNDYSEMAKAYRP 161
>sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2 Length = 436
Score = 172 bits (435), Expect = 2e-42 Identities = 78/102 (76%), Positives = 92/102 (90%) Frame = +2
Query: 329 GNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKET 508 G+++G FRV+T+GESHGGGVGC+IDG PPR+PLTE+D+QF+LDRRRPGQSRITTPRKET Sbjct: 52 GSSYGTHFRVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRRRPGQSRITTPRKET 111
Query: 509 DTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 DTC I SGV++G+T GTPI V VPNTDQRG DY EMS+AYRP Sbjct: 112 DTCRISSGVSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRP 153
>sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=aroC PE=3 SV=1 Length = 362
Score = 160 bits (405), Expect = 5e-39 Identities = 74/103 (71%), Positives = 88/103 (85%) Frame = +2
Query: 326 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 505 +G++FG+LFR++T+GESHGGGVG VIDG PPRL ++EA++QFELDRRRPGQS+ITTPRKE Sbjct: 1 MGSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKE 60
Query: 506 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 D C ILSGV DG TLGTPIA+ V N DQR DY EM +AYRP Sbjct: 61 ADQCEILSGVVDGKTLGTPIAIVVRNKDQRSQDYSEMQVAYRP 103
>sp|Q5N2I0|AROC_SYNP6 Chorismate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroC PE=3 SV=1 Length = 362
Score = 157 bits (398), Expect = 3e-38 Identities = 73/103 (70%), Positives = 87/103 (84%) Frame = +2
Query: 326 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 505 +G++FG+LFR++T+GESHGGGVG VIDG PPRL ++EA++QFELDRRRPGQS+ITTPRKE Sbjct: 1 MGSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKE 60
Query: 506 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 D C ILSGV DG TL TPIA+ V N DQR DY EM +AYRP Sbjct: 61 ADQCEILSGVVDGKTLDTPIAIVVRNKDQRSQDYSEMQVAYRP 103
>sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=aroC PE=3 SV=1 Length = 363
Score = 154 bits (388), Expect = 5e-37 Identities = 73/103 (70%), Positives = 85/103 (82%) Frame = +2
Query: 326 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 505 +GNTFG+LFRVTT+GESHGGGVG V+DG PPRL L+E D+Q ELDRRRPGQSR+TTPR+E Sbjct: 1 MGNTFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQKELDRRRPGQSRLTTPRQE 60
Query: 506 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 +D C ILSGV +G TLGTPIA+ V N D R DY EM+ YRP Sbjct: 61 SDRCEILSGVFEGKTLGTPIAILVRNKDTRPEDYAEMAQVYRP 103
>sp|B0C2W2|AROC_ACAM1 Chorismate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=aroC PE=3 SV=1 Length = 364
Score = 153 bits (386), Expect = 8e-37 Identities = 71/103 (68%), Positives = 83/103 (80%) Frame = +2
Query: 326 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 505 +GNTFG+LFR+TT+GESHGGGVG VIDG PP++ + D+QFELDRRRPGQSRITTPRKE Sbjct: 1 MGNTFGHLFRITTFGESHGGGVGVVIDGCPPQIEIAAEDIQFELDRRRPGQSRITTPRKE 60
Query: 506 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 TDTC I+SG+ G TLGTPI + V N D R DY EM+ YRP Sbjct: 61 TDTCEIVSGMFQGKTLGTPITILVRNKDTRPQDYSEMAQVYRP 103
>sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (strain PCC 6803) GN=aroC PE=3 SV=2 Length = 362
Score = 150 bits (380), Expect = 4e-36 Identities = 69/103 (66%), Positives = 84/103 (81%) Frame = +2
Query: 326 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 505 +GNTFG+LFR+TT+GESHGGGVG +IDG PPRL ++ ++Q +LDRRRPGQS+ITTPRKE Sbjct: 1 MGNTFGSLFRITTFGESHGGGVGVIIDGCPPRLEISPEEIQVDLDRRRPGQSKITTPRKE 60
Query: 506 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 D C ILSGV +G TLGTPIA+ V N D R DY EM++ YRP Sbjct: 61 ADQCEILSGVFEGKTLGTPIAILVRNKDARSQDYNEMAVKYRP 103
>sp|Q110N5|AROC_TRIEI Chorismate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=aroC PE=3 SV=1 Length = 370
Score = 150 bits (379), Expect = 5e-36 Identities = 69/103 (66%), Positives = 85/103 (82%) Frame = +2
Query: 326 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 505 +GN FG+LFRVTT+GESHGGGVG +IDG PP+L + ++Q+ELDRRRPGQS+ITTPRKE Sbjct: 1 MGNIFGHLFRVTTFGESHGGGVGVIIDGCPPKLEINVKEIQYELDRRRPGQSKITTPRKE 60
Query: 506 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRP 634 +DTC ILSGV +G TLGTPI + V N D R DYQ+M++ YRP Sbjct: 61 SDTCEILSGVFEGQTLGTPIMIWVRNKDARPQDYQDMAIKYRP 103
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTV8 |
Definition |
tr|A9RTV8|A9RTV8_PHYPA Chorismate synthase OS=Physcomitrella patens subsp. patens |
Align length |
110 |
Score (bit) |
193.0 |
E-value |
8.0e-48 |
Report |
|