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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963585
Clone id TST39A01NGRL0016_O22
Library
Length 667
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_O22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGAGAGAGAGAGACTCTGTGTTGTTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGA
GAGAGAGACTCTGTGTTGTTGTGTGTGTGTGTGTGAGAGAGAGGGCGTAGACCAACAAGA
CCCACCTGCTCGTTCTCCTTCGTACGAGCGTCACTCCCCTGCGCCCCTCACTCCCCCGCC
TGCATTGTAGTTCTCGTAAGCTGAGCTGAGCTGAGCTCTCCCATGGCCGCGCCTAGTAGG
CGCCGCAAACGCGCCCTCCCTTGCAACCCCTTCTTCCCCTTCCTCTTCCTCTTTCTGCTC
CAGCTCCTCCATAGCTCGCCTGCACTCTCCTCCTCCTCCTCTTCTTCTGCTAACGGCGGC
TTCGTCCTCCCCCTTCTCCACAAAACCTCTCTCCCTGCCCCTTACTCGCGCCATTCTTCC
CCTCTCGACTTTCTCGCTGAAGCGAAATCGCTCGACGAAGCTCGCCGCGCCGCCATCGCC
TCATCGCTGAGCAGGGGACGAAACTCTTCACCTACATTGTCTCGCTTTTCTGCTCCTTTC
GACGCCATTGCGGCAAGCAACGCGAGAGATGGCTTCAGAACAGGGGTGAGGTCCGGAGCC
TCGGAAGGGGCAGGGCAGTATTTTGTGCAGCTCGCCATTGGTACTCCGCCGCAGCAATTC
CTTCTTA
■■Homology search results ■■ -
sp_hit_id Q5XHH7
Definition sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin-B OS=Xenopus laevis
Align length 25
Score (bit) 30.8
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O22, 5'
         (667 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin-B O...    31   6.8  
sp|Q9DBC0|SELO_MOUSE Selenoprotein O OS=Mus musculus GN=Selo PE=...    30   8.8  
sp|Q2NSZ8|RNFD_SODGM Electron transport complex protein rnfD OS=...    30   8.9  

>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin-B
           OS=Xenopus laevis GN=syvn1-B PE=2 SV=1
          Length = 595

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 RRPTRPTCSFSFVRASLPCAPHSPA 180
           R+ T PTC    +RASLP  P +PA
Sbjct: 316 RQQTCPTCRMDVLRASLPTQPQTPA 340


>sp|Q9DBC0|SELO_MOUSE Selenoprotein O OS=Mus musculus GN=Selo PE=1
           SV=3
          Length = 667

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 644 VPMASCTKYCPAPSEAPDLTPVLKPSLALLAAMASKGAE 528
           VP A  ++  PAP   P L  + +P+LALL   AS+ AE
Sbjct: 78  VPGACFSRARPAPLRRPRLVALSEPALALLGLEASEEAE 116


>sp|Q2NSZ8|RNFD_SODGM Electron transport complex protein rnfD
           OS=Sodalis glossinidius (strain morsitans) GN=rnfD PE=3
           SV=1
          Length = 346

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 514 TLSRFSAPFDAIAASNARDGFRTGVRSGA 600
           TL++  A  D I  +   DGF+TG+R+GA
Sbjct: 172 TLTQLRATVDGITQATPLDGFKTGLRTGA 200
tr_hit_id A7P326
Definition tr|A7P326|A7P326_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera
Align length 39
Score (bit) 43.1
E-value 0.016
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O22, 5'
         (667 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P326|A7P326_VITVI Chromosome chr1 scaffold_5, whole genome ...    43   0.016
tr|A9RCN7|A9RCN7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.045
tr|Q9LI73|Q9LI73_ARATH Chloroplast nucleoid DNA binding protein-...    41   0.059
tr|A9TM24|A9TM24_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.22 
tr|Q5QM89|Q5QM89_ORYSJ Putative uncharacterized protein B1144G04...    39   0.29 
tr|Q0JKE8|Q0JKE8_ORYSJ Os01g0679500 protein OS=Oryza sativa subs...    39   0.29 
tr|A5AKV9|A5AKV9_VITVI Putative uncharacterized protein (Chromos...    39   0.29 
tr|A2WTS5|A2WTS5_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.29 
tr|A9S045|A9S045_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.38 
tr|Q0DG23|Q0DG23_ORYSJ Os05g0557100 protein OS=Oryza sativa subs...    38   0.50 
tr|A2Y7B7|A2Y7B7_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.50 
tr|A9RSN4|A9RSN4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.85 
tr|A7QNM3|A7QNM3_VITVI Chromosome undetermined scaffold_133, who...    37   0.85 
tr|Q9LNJ3|Q9LNJ3_ARATH F6F3.10 protein (At1g01300) (Chloroplast ...    36   1.9  
tr|Q8L9B9|Q8L9B9_ARATH Chloroplast nucleoid DNA binding protein,...    36   1.9  
tr|B4FDJ8|B4FDJ8_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.9  
tr|A9RYP4|A9RYP4_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.9  
tr|A9NV06|A9NV06_PICSI Putative uncharacterized protein OS=Picea...    36   1.9  
tr|B4D8C8|B4D8C8_9BACT Putative uncharacterized protein OS=Chtho...    36   2.5  
tr|Q9M356|Q9M356_ARATH Putative uncharacterized protein F15G16.2...    35   3.2  
tr|Q94BT8|Q94BT8_ARATH AT3g61820/F15G16_210 OS=Arabidopsis thali...    35   3.2  
tr|A9PCK2|A9PCK2_POPTR Putative uncharacterized protein OS=Popul...    35   3.2  
tr|A7PGQ3|A7PGQ3_VITVI Chromosome chr17 scaffold_16, whole genom...    35   3.2  
tr|Q4TEX8|Q4TEX8_TETNG Chromosome undetermined SCAF5014, whole g...    35   4.2  
tr|Q9LS40|Q9LS40_ARATH CND41, chloroplast nucleoid DNA binding p...    35   4.2  
tr|Q94D20|Q94D20_ORYSJ Nucleoid DNA-binding protein cnd41-like (...    35   4.2  
tr|A7PJT8|A7PJT8_VITVI Chromosome chr12 scaffold_18, whole genom...    35   4.2  
tr|A2ZV28|A2ZV28_ORYSJ Putative uncharacterized protein OS=Oryza...    35   4.2  
tr|A2WS70|A2WS70_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.2  
tr|Q6L558|Q6L558_ORYSJ Unknow protein OS=Oryza sativa subsp. jap...    35   5.5  

>tr|A7P326|A7P326_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030279001
           PE=4 SV=1
          Length = 458

 Score = 43.1 bits (100), Expect = 0.016
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +1

Query: 550 AASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           +A +     ++ V SGAS G+GQYFV L +GTPPQ+ LL
Sbjct: 66  SALHTPQSLKSPVVSGASTGSGQYFVDLRLGTPPQKLLL 104


>tr|A9RCN7|A9RCN7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_201465 PE=4 SV=1
          Length = 418

 Score = 41.6 bits (96), Expect = 0.045
 Identities = 18/32 (56%), Positives = 25/32 (78%)
 Frame = +1

Query: 571 GFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           GF++ V SG++ G+GQYFV   +GTPPQ+F L
Sbjct: 48  GFQSPVVSGSTLGSGQYFVDFFLGTPPQKFSL 79


>tr|Q9LI73|Q9LI73_ARATH Chloroplast nucleoid DNA binding
           protein-like; nucellin-like protein (At3g25700)
           OS=Arabidopsis thaliana GN=At3g25700 PE=2 SV=1
          Length = 452

 Score = 41.2 bits (95), Expect = 0.059
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
 Frame = +1

Query: 520 SRFSAPFDAIAASNARDGF-----------RTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           S F +P  A+A    R  F           ++ V SGA+ G+GQYFV L IG PPQ  LL
Sbjct: 40  SPFPSPTQALALDTRRLHFLSLRRKPIPFVKSPVVSGAASGSGQYFVDLRIGQPPQSLLL 99


>tr|A9TM24|A9TM24_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196312 PE=4 SV=1
          Length = 419

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +1

Query: 574 FRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           F++ V SG++ G+GQYFV   +GTPPQ+F L
Sbjct: 50  FQSPVVSGSTLGSGQYFVDFFLGTPPQKFSL 80


>tr|Q5QM89|Q5QM89_ORYSJ Putative uncharacterized protein B1144G04.37
           OS=Oryza sativa subsp. japonica GN=B1144G04.37 PE=4 SV=1
          Length = 216

 Score = 38.9 bits (89), Expect = 0.29
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 553 ASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           A+     F   + SGA  G GQYFV+  +GTP Q FLL
Sbjct: 65  AAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLL 102


>tr|Q0JKE8|Q0JKE8_ORYSJ Os01g0679500 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0679500 PE=4 SV=1
          Length = 484

 Score = 38.9 bits (89), Expect = 0.29
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 553 ASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           A+     F   + SGA  G GQYFV+  +GTP Q FLL
Sbjct: 65  AAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLL 102


>tr|A5AKV9|A5AKV9_VITVI Putative uncharacterized protein (Chromosome
           undetermined scaffold_203, whole genome shotgun
           sequence) OS=Vitis vinifera GN=GSVIVT00008623001 PE=4
           SV=1
          Length = 489

 Score = 38.9 bits (89), Expect = 0.29
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +1

Query: 571 GFRTGVRSGASEGAGQYFVQLAIGTPPQ 654
           GF + V SG ++G+G+YF +L +GTPP+
Sbjct: 131 GFSSSVTSGLAQGSGEYFTRLGVGTPPK 158


>tr|A2WTS5|A2WTS5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03267 PE=4 SV=1
          Length = 484

 Score = 38.9 bits (89), Expect = 0.29
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 553 ASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           A+     F   + SGA  G GQYFV+  +GTP Q FLL
Sbjct: 65  AAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLL 102


>tr|A9S045|A9S045_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_121919 PE=4 SV=1
          Length = 392

 Score = 38.5 bits (88), Expect = 0.38
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +1

Query: 574 FRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           FRT + SG + G+GQYFV  ++GTP Q+F L
Sbjct: 19  FRTPLVSGTTLGSGQYFVDFSLGTPEQKFHL 49


>tr|Q0DG23|Q0DG23_ORYSJ Os05g0557100 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0557100 PE=4 SV=1
          Length = 494

 Score = 38.1 bits (87), Expect = 0.50
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +1

Query: 550 AASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
           A + A   F   + SGA  G GQYFV+  +GTP Q F+L
Sbjct: 87  AGAVAASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFVL 125