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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963591
Clone id TST39A01NGRL0016_P04
Library
Length 656
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_P04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGAGAGATAGAGAGAGAGAGAGAGAGAGAGATGGAGCCTGTAGGGTTTGTTGGTATCAT
CGAGCTCACCGCCTTGATAATTCAGAGGAACTCGAAGCATTTTCTGTGCATTGCACTCAT
ACGACCTCTCCCTGCTGCTCTGCAGGCACTTCTACTGGATACCTCGGGCTCGATCAGACA
GTTTCTAGCCTCCATATCCTACCTGTACAAGCTTCTGGACGGTAAACTGCCGCCGCCAGA
TGTGATCGACCCCTCGGCCTTTGACAGGGGCTCGCAACCCCATGCAGCTCACAAGGTCGC
GCTGGAGGTGGCCCTGATCGCCTTCTCTCTTGTGGTGGCTTTCACGTGCACGCCGCTGCT
AACATTTAGTGCGTGCAGGGCGGTCCTGGGGAAGAGCGTGGATATGAGAGGGTCTGCAGG
GGGGATATGGCGGTCGGTGGGAAAGCTGGTGGTGACGATTCTGTGCCTGGTGGCGGCGAT
GATGGTGGGCCTGGTAGCGGCGATGGTGGCGGTGGCAGTGAGGACTGCGGTGGTTGGAGG
CACTCTCTGAGCGGTTATAAGCGTAGCTGGAGTATCAGTGGTTGGCGCTGGGCTCGTCTA
TTTAGGGGTGATGCTAAATTTGGCCGGAACGGTGGCTATTGTGGAGGAGGCCCAGG
■■Homology search results ■■ -
sp_hit_id Q8NFJ8
Definition sp|Q8NFJ8|BHLH5_HUMAN Class B basic helix-loop-helix protein 5 OS=Homo sapiens
Align length 43
Score (bit) 31.2
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963591|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_P04, 5'
         (656 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NFJ8|BHLH5_HUMAN Class B basic helix-loop-helix protein 5 O...    31   5.0  
sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=O...    31   6.5  
sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thali...    30   6.7  
sp|A5D7F8|SH3R1_BOVIN Putative E3 ubiquitin-protein ligase SH3RF...    30   8.5  
sp|P49281|NRAM2_HUMAN Natural resistance-associated macrophage p...    30   8.5  
sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated ...    30   8.5  
sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activate...    30   8.5  
sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate c...    30   8.5  

>sp|Q8NFJ8|BHLH5_HUMAN Class B basic helix-loop-helix protein 5
           OS=Homo sapiens GN=BHLHB5 PE=2 SV=1
          Length = 381

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 238 RCDRPLGL*QGLATPCSSQGRAGGGPDRLLSCGGFHVHAAANI 366
           RC+  L L  G+A P +S G  GGG      C   H+H  A++
Sbjct: 155 RCE--LVLRAGVADPRASPGAGGGGAKAAEGCSNAHLHGGASV 195


>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50
           OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2
           SV=2
          Length = 641

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 325 LSCGGFHVHAAANI*CVQGGPGEE-RGYERV 414
           LSCGG     AA     +GG GEE RGYERV
Sbjct: 27  LSCGGARRSWAAAAATAEGGGGEEGRGYERV 57


>sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thaliana
            GN=FH20 PE=2 SV=2
          Length = 1615

 Score = 28.1 bits (61), Expect(2) = 6.7
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -1

Query: 392  SPGPPCTH*MLAAACT*KPPQERRRSGPPPARPCELHGVASPCQRP 255
            +P PP    M   A    PP       PPP  P  +HG A P   P
Sbjct: 1022 APPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPP 1067



 Score = 21.2 bits (43), Expect(2) = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 433  PPYPPCRPSHIHALPQDRP 377
            PP PP   SH+ ++P   P
Sbjct: 996  PPPPPPPFSHVSSIPPPPP 1014



 Score = 30.4 bits (67), Expect = 8.5
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = -1

Query: 422  PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPCELHGVASPCQRP 255
            P    S+  S P PP    M   A    PP       PPP  P  +HG A P   P
Sbjct: 999  PPPPFSHVSSIPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPP 1054


>sp|A5D7F8|SH3R1_BOVIN Putative E3 ubiquitin-protein ligase SH3RF1
           OS=Bos taurus GN=SH3RF1 PE=2 SV=1
          Length = 840

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
 Frame = -1

Query: 389 PGPPCTH*MLAAACT*KPPQERRRSG-------PPPARPCELHGVASPCQRPR-GRSHLA 234
           PGPPC         T  P  +RR S        PPP +PC   G A+   RP     H  
Sbjct: 729 PGPPCACPGPCDGDTMAPGPQRRASSLDSAPVAPPPRQPCSSLGPAASEVRPAVCERHRV 788

Query: 233 AAVYRPEA 210
              Y P++
Sbjct: 789 VVSYPPQS 796


>sp|P49281|NRAM2_HUMAN Natural resistance-associated macrophage
           protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2
          Length = 568

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 326 SLVVAFTCTPLLTFSACRAVLGKSVDMRGSAGGIWRSVGKLVVTILC 466
           SL + F   P+LTF++ R V+    +  G     WR  G ++V I+C
Sbjct: 447 SLQLPFALIPILTFTSLRPVMSDFANGLG-----WRIAGGILVLIIC 488


>sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated
            cyclic nucleotide-gated channel 4 OS=Rattus norvegicus
            GN=Hcn4 PE=2 SV=1
          Length = 1198

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -1

Query: 431  AISPLQTLSYPRSSPGPPCTH*-------------MLAAACT*KPPQERRRSGPPPARPC 291
            A +P   LS P  SPGPP T               +L  A +  PPQ  +R G PP  P 
Sbjct: 1016 AFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPG 1075

Query: 290  EL 285
             L
Sbjct: 1076 RL 1077


>sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activated
            cyclic nucleotide-gated channel 4 OS=Mus musculus GN=Hcn4
            PE=1 SV=2
          Length = 1186

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -1

Query: 431  AISPLQTLSYPRSSPGPPCTH*-------------MLAAACT*KPPQERRRSGPPPARPC 291
            A +P   LS P  SPGPP T               +L  A +  PPQ  +R G PP  P 
Sbjct: 1003 AFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPG 1062

Query: 290  EL 285
             L
Sbjct: 1063 RL 1064


>sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate
           compartment protein 2 OS=Gecko japonicus GN=ERGIC2 PE=2
           SV=1
          Length = 377

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
 Frame = -1

Query: 356 AACT*KPPQERRRSGPPPARPCELHG--------------VASPCQRPRGRSHLAAAV 225
           +A T  PP+E   S PP A  C +HG              V      PRG +HLAA V
Sbjct: 151 SASTALPPREDDSSQPPDA--CRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALV 206
tr_hit_id Q6Z8B3
Definition tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 37.7
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963591|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_P04, 5'
         (656 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa sub...    38   0.62 
tr|A9F3U7|A9F3U7_SORC5 Transcriptional regulator, AraC family OS...    36   1.8  
tr|P89466|P89466_HHV2 Tegument protein OS=Human herpesvirus 2 GN...    36   2.4  
tr|Q93SJ8|Q93SJ8_MYXXA USC3-5p OS=Myxococcus xanthus PE=4 SV=1         36   2.4  
tr|A8XL03|A8XL03_CAEBR Putative uncharacterized protein OS=Caeno...    36   2.4  
tr|A7LK18|A7LK18_HHV2 VP11/12 OS=Human herpesvirus 2 GN=UL46 PE=...    35   4.0  
tr|Q0E424|Q0E424_ORYSJ Os02g0140100 protein OS=Oryza sativa subs...    34   6.9  
tr|Q08TT5|Q08TT5_STIAU Putative uncharacterized protein OS=Stigm...    34   9.0  
tr|B5H1F4|B5H1F4_STRCL Peptidase S8 and S53 subtilisin kexin sed...    34   9.0  
tr|Q69PS1|Q69PS1_ORYSJ Putative uncharacterized protein OSJNBb00...    34   9.0  

>tr|Q6Z8B3|Q6Z8B3_ORYSJ Extensin class 1-like OS=Oryza sativa subsp.
           japonica GN=P0470A03.23 PE=4 SV=1
          Length = 272

 Score = 37.7 bits (86), Expect = 0.62
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 425 SPLQTLSYPRS-SPGPPCTH*MLAAACT*KPPQERRRSGPPPARPCELHGVASPCQRPR 252
           +P+QT   P   +P PPC      AAC   PP   R S PPP  P  L   A+ C+R R
Sbjct: 178 APMQTPPPPPGPAPLPPC------AACWPPPPSPLRASTPPPPGPAPLPPFAACCRRRR 230


>tr|A9F3U7|A9F3U7_SORC5 Transcriptional regulator, AraC family
           OS=Sorangium cellulosum (strain So ce56) GN=sce4453 PE=4
           SV=1
          Length = 281

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -1

Query: 434 TAISPLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPCEL--HGVASP-- 267
           TA   L T + P S+P  P +   + AAC+   P     SG P ARP  L  HGVA+P  
Sbjct: 85  TAGEVLVTTALPISTPIAPSSSHSMPAACSLSVP-----SGAPAARPASLPAHGVAAPSH 139

Query: 266 -CQRPRGRS 243
             Q PR R+
Sbjct: 140 GAQLPRERA 148


>tr|P89466|P89466_HHV2 Tegument protein OS=Human herpesvirus 2
           GN=UL46 PE=4 SV=1
          Length = 722

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -1

Query: 395 SSPGPPCTH*MLAAACT*KPPQERRRSGPPP---ARPCELHGVASPCQRPR----GRSHL 237
           ++ GPP     +  +C  K  + RR + PPP   ARP         C+R R       H+
Sbjct: 425 AASGPPGGRGAVGGSCRDKIQRTRRDNAPPPLPRARPHSTPAAPRRCRRHREDLPEPPHV 484

Query: 236 AAAVYRPEACTGR--IWRLETV*SSPRYPVEVPA 141
            AA   PE C GR   +      + PR P   PA
Sbjct: 485 DAADRGPEPCAGRPATYYTHMAGAPPRLPPRNPA 518


>tr|Q93SJ8|Q93SJ8_MYXXA USC3-5p OS=Myxococcus xanthus PE=4 SV=1
          Length = 575

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
 Frame = -1

Query: 425 SPLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPP----------PARPCELHGV 276
           +PLQ  + PR+ P   C       +C   PP   R S P           P+ PC L   
Sbjct: 176 APLQRTAAPRAGPSG-CPAARCPGSC---PPGAGRSSWPMQYRRARRVRRPSPPCRLPAP 231

Query: 275 ASPCQRPRGRSHLAAAVYRPEACTGRIWRLET 180
             PCQR   R+  A   +R   C  R WR  T
Sbjct: 232 PGPCQR---RAASAVRWHRHAQCPARRWRSRT 260


>tr|A8XL03|A8XL03_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG14923 PE=4 SV=1
          Length = 1423

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -1

Query: 425 SPLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPCELHGVASPCQRPRGR 246
           SP+Q     R SP PP      +A    + P  RRRS P P R  + H ++     PR R
Sbjct: 427 SPIQKRKPSRRSPSPPRRRRSPSAT---RSPARRRRSSPSPIRGKKNHHMSPSASPPRRR 483

Query: 245 SHLAAAVYRPEACTGRIW 192
                +  R  + + ++W
Sbjct: 484 RDQTKSPVRDRSESPKMW 501


>tr|A7LK18|A7LK18_HHV2 VP11/12 OS=Human herpesvirus 2 GN=UL46 PE=4
           SV=1
          Length = 722

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -1

Query: 395 SSPGPPCTH*MLAAACT*KPPQERRRSGPPP---ARPCELHGVASPCQRPR----GRSHL 237
           ++ GPP     +  +C  K  + RR + PPP   ARP          +RPR       H+
Sbjct: 425 AASGPPGGRGAVGGSCRDKIQRTRRDNAPPPLPRARPHSTPAAPRRFRRPREDLPEPPHV 484

Query: 236 AAAVYRPEACTGR--IWRLETV*SSPRYPVEVPA 141
            AA   PE C GR   +      + PR P   PA
Sbjct: 485 DAADRGPEPCAGRPATYYTHMAGAPPRLPPRNPA 518


>tr|Q0E424|Q0E424_ORYSJ Os02g0140100 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0140100 PE=4 SV=1
          Length = 130

 Score = 34.3 bits (77), Expect = 6.9
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -1

Query: 422 PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARP 294
           P  TL  P  +  PP T    AAA     P  RR   PPPARP
Sbjct: 53  PPSTLISPSHAAPPPSTPPSTAAAPPSSQPSSRRHLSPPPARP 95


>tr|Q08TT5|Q08TT5_STIAU Putative uncharacterized protein
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_0142 PE=4
           SV=1
          Length = 219

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 341 KPPQERRRSGPPPARPCELHGVASPCQRPRG 249
           +P + RR++G PP RP  +    + C+RPRG
Sbjct: 170 RPRRSRRKTGCPPRRPSRIPSRRARCRRPRG 200


>tr|B5H1F4|B5H1F4_STRCL Peptidase S8 and S53 subtilisin kexin
           sedolisin OS=Streptomyces clavuligerus ATCC 27064
           GN=SSCG_05428 PE=4 SV=1
          Length = 948

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 335 PQERRRSGPPPARPCEL----HGVASPCQRPRGRSHLAAAV-YRPEACTGRIWRLETV*S 171
           P+  RR GP PA P +     H  A   QRP GR H AA   +RP      + +      
Sbjct: 697 PRPARRPGPVPAGPADRRTGQHPGADHPQRPAGRGHGAARPRHRPRRAVAHLHQRPG--D 754

Query: 170 SPRYPVEVPAEQQG 129
           SP  P  +P  Q G
Sbjct: 755 SPPEPQRLPDSQLG 768


>tr|Q69PS1|Q69PS1_ORYSJ Putative uncharacterized protein
           OSJNBb0039F24.31 (Putative uncharacterized protein
           P0019A05.18) OS=Oryza sativa subsp. japonica
           GN=OSJNBb0039F24.31 PE=4 SV=1
          Length = 160

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = -1

Query: 422 PLQTLSYPRSSPGPPCTH*MLAAACT*KPPQERRRSGPPPARPCELHGVASPCQRPRGRS 243
           P+   S PR+S   P +    A  C   PP+  R++ PPP     L G ASP  +P  R 
Sbjct: 16  PVPYKSLPRTSS--PISLTRRALPCLLPPPRRARQAPPPP----PLSGRASPLLQPPLRR 69

Query: 242 HLAAAVYRPEACTGRIWRLETV*SSPRYP 156
            +AAA       T    RL    + P  P
Sbjct: 70  TIAAASIAAARATSAAVRLPCAVAIPLSP 98