NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AY4A-1YAAA
confEVID 1AY4A-1YAAA
pdbIDA 1AY4
pdbIDB 1YAA
pdbChainA A
pdbChainB A
identity 0.313699990510941
indelSize 2
alignment <alignment>
<seq1>---MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-ETTKTYAGLSGEPEFQKAMGELILGDGLKSE-----TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD-GLEEDAAGTRLIASRIP---EVLIAASCSKNFGIYRERTGCLLALCAD----AATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV---</seq1>
<seq2>SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVRFYA</seq2>
<ss_1>--- HHHHHHHHH HHHHHHHHHHHHH- HHHHHHHHHHHHGGGEEGG-----EEEEEEE HHHHHHHHHHHHHHHH EEE HHHHHHH EEE EE EEHHHHHHHGGG EEEE HHHHHHHHHHHHH EEEEEE - GGGHHHHHHHHH --- EEEEEEE GGG EEEEEEE ----HHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHH HHHHHHHHH EEEEEGG HHHHHHHHHHH ---</ss_1>
<ss_2> HHHHHHHH HHHHHHHHHHH HHHHHHHHHHHH --HHHH EEEEEEE HHHHHHHHHHHHHHHH EEE HHHHHH EEEEEEE EEEHHHHHHHHHH EEEE HHHHHHHHHHHHH EEEEEE HHHH HHHHHHHHH EEEEEEE GGG EEEEEEE GGHHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHH HHHHHHHH EEE EEEEGG HHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AY4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AY4A</entryIDChain>
<sequence>RMLET-ETTKT</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 409 CA ARG A 59 93.751 43.945 -15.340 1.00 26.06 C </line>
<line>ATOM 420 CA MET A 60 95.041 43.856 -11.770 1.00 23.20 C </line>
<line>ATOM 428 CA LEU A 61 98.601 44.497 -12.986 1.00 27.10 C </line>
<line>ATOM 436 CA GLU A 62 97.496 47.759 -14.618 1.00 31.08 C </line>
<line>ATOM 445 CA THR A 63 95.086 49.003 -11.964 1.00 29.42 C </line>
<line>ATOM 452 CA GLU A 64 96.554 48.128 -8.586 1.00 29.09 C </line>
<line>ATOM 461 CA THR A 66 98.391 51.072 -7.082 1.00 23.85 C </line>
<line>ATOM 468 CA THR A 67 99.200 49.727 -3.627 1.00 19.66 C </line>
<line>ATOM 475 CA LYS A 68 99.766 46.542 -1.637 1.00 17.84 C </line>
<line>ATOM 484 CA THR A 69 99.123 47.879 1.866 1.00 19.18 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS THR THR GLU THR GLU LEU MET ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 18.45 15.19 14.15 11.85 8.42 6.23 5.39 5.42 3.80 </line>
<line>MET CA 14.79 11.50 10.87 9.23 5.54 5.15 5.42 3.82 </line>
<line>LEU CA 15.24 11.59 10.74 8.84 6.06 5.81 3.81 </line>
<line>GLU CA 16.56 13.23 11.30 8.28 6.12 3.79 </line>
<line>THR CA 14.45 11.60 9.32 6.25 3.79 </line>
<line>GLU CA 10.77 7.82 5.84 3.78 </line>
<line>THR CA 9.53 7.22 3.79 </line>
<line>THR CA 5.80 3.80 </line>
<line>LYS CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ARG CA 238</line>
<line>MET CA 249</line>
<line>LEU CA 187</line>
<line>GLU CA 149</line>
<line>THR CA 167</line>
<line>GLU CA 184</line>
<line>THR CA 118</line>
<line>THR CA 131</line>
<line>LYS CA 163</line>
<line>THR CA 135</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YAAA</entryIDChain>
<sequence>LIHNDSSYNHE</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 446 CA LEU A 59 33.287 16.632 53.261 1.00 19.41 C </line>
<line>ATOM 454 CA ILE A 60 33.790 19.970 55.025 1.00 19.88 C </line>
<line>ATOM 462 CA HIS A 61 30.072 20.370 55.768 1.00 30.74 C </line>
<line>ATOM 472 CA ASN A 62 29.810 16.725 56.798 1.00 33.57 C </line>
<line>ATOM 480 CA ASP A 63 32.421 17.398 59.475 1.00 27.43 C </line>
<line>ATOM 488 CA SER A 64 30.940 17.494 62.992 1.00 31.10 C </line>
<line>ATOM 494 CA SER A 65 33.532 20.097 63.988 1.00 31.42 C </line>
<line>ATOM 500 CA TYR A 66 32.628 22.431 61.093 1.00 15.50 C </line>
<line>ATOM 512 CA ASN A 67 32.690 26.107 62.120 1.00 13.94 C </line>
<line>ATOM 520 CA HIS A 68 33.339 29.724 61.142 1.00 2.11 C </line>
<line>ATOM 530 CA GLU A 69 36.048 30.546 63.728 1.00 10.31 C </line>
</atom-coordinate>
<distance-map>
<line> GLU HIS ASN TYR SER SER ASP ASN HIS ILE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 17.63 15.28 12.99 9.77 11.28 10.05 6.32 4.96 5.53 3.81 </line>
<line>ILE CA 13.88 11.52 9.45 6.65 8.97 8.82 5.32 5.43 3.81 </line>
<line>HIS CA 14.23 11.27 8.95 6.26 8.92 7.82 5.30 3.80 </line>
<line>ASN CA 16.67 14.15 11.16 7.68 8.77 6.34 3.80 </line>
<line>ASP CA 14.29 12.47 9.11 5.29 5.37 3.82 </line>
<line>SER CA 14.04 12.60 8.83 5.55 3.81 </line>
<line>SER CA 10.75 10.04 6.35 3.83 </line>
<line>TYR CA 9.19 7.33 3.82 </line>
<line>ASN CA 5.79 3.80 </line>
<line>HIS CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>LEU CA 246</line>
<line>ILE CA 268</line>
<line>HIS CA 196</line>
<line>ASN CA 159</line>
<line>ASP CA 171</line>
<line>SER CA 112</line>
<line>SER CA 137</line>
<line>TYR CA 184</line>
<line>ASN CA 179</line>
<line>HIS CA 190</line>
<line>GLU CA 179</line>
</n14>
</entryChain>
<parallel>
<x>64.48600006103516</x>
<y>27.281999588012695</y>
<z>-69.18800354003906</z>
</parallel>
<rotation>
<x>-0.8560000061988831</x>
<y>-0.20800000429153442</y>
<z>0.4740000069141388</z>
<x>0.5170000195503235</x>
<y>-0.34599998593330383</y>
<z>0.7829999923706055</z>
<x>0.0010000000474974513</x>
<y>0.9150000214576721</y>
<z>0.40400001406669617</z>
</rotation>
<rmsd>1.8325090408325195</rmsd>
<dmax>4.043004989624023</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AY4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AY4A</entryIDChain>
<sequence>QGFGD-GLEED</sequence>
<secondary-structure> - GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1597 CA GLN A 226 80.402 24.079 -7.620 1.00 17.00 C </line>
<line>ATOM 1606 CA GLY A 227 80.075 23.953 -11.386 1.00 16.82 C </line>
<line>ATOM 1610 CA PHE A 228 81.675 20.530 -11.996 1.00 18.26 C </line>
<line>ATOM 1621 CA GLY A 229 78.519 18.480 -11.466 1.00 19.64 C </line>
<line>ATOM 1625 CA ASP A 230 75.407 19.470 -13.396 1.00 21.72 C </line>
<line>ATOM 1633 CA GLY A 231 75.996 23.211 -13.509 1.00 19.48 C </line>
<line>ATOM 1637 CA LEU A 233 76.840 26.302 -11.481 1.00 20.51 C </line>
<line>ATOM 1645 CA GLU A 234 73.272 26.878 -10.248 1.00 20.88 C </line>
<line>ATOM 1654 CA GLU A 235 72.397 23.170 -10.063 1.00 21.22 C </line>
<line>ATOM 1663 CA ASP A 236 75.373 22.234 -7.881 1.00 17.62 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLU GLU LEU GLY ASP GLY PHE GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.36 8.42 8.10 5.70 7.41 8.92 7.05 5.78 3.78 </line>
<line>GLY CA 6.11 7.83 7.49 4.00 4.66 6.78 5.69 3.83 </line>
<line>PHE CA 7.72 9.84 10.68 7.55 6.46 6.51 3.80 </line>
<line>GLY CA 6.07 7.84 9.98 8.00 5.74 3.79 </line>
<line>ASP CA 6.17 5.82 8.33 7.24 3.79 </line>
<line>GLY CA 5.75 4.98 5.61 3.79 </line>
<line>LEU CA 5.63 5.62 3.82 </line>
<line>GLU CA 5.62 3.81 </line>
<line>GLU CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLN CA 491</line>
<line>GLY CA 437</line>
<line>PHE CA 477</line>
<line>GLY CA 446</line>
<line>ASP CA 344</line>
<line>GLY CA 337</line>
<line>LEU CA 385</line>
<line>GLU CA 309</line>
<line>GLU CA 306</line>
<line>ASP CA 413</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YAAA</entryIDChain>
<sequence>QGFATGDLDKD</sequence>
<secondary-structure> HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1700 CA GLN A 226 49.313 27.053 37.178 1.00 13.08 C </line>
<line>ATOM 1709 CA GLY A 227 47.596 24.160 35.413 1.00 15.09 C </line>
<line>ATOM 1713 CA PHE A 228 45.997 26.144 32.578 1.00 19.21 C </line>
<line>ATOM 1724 CA ALA A 229 48.956 26.638 30.248 1.00 18.04 C </line>
<line>ATOM 1729 CA THR A 230 49.746 22.975 29.495 1.00 17.95 C </line>
<line>ATOM 1736 CA GLY A 231 47.087 21.468 31.727 1.00 18.52 C </line>
<line>ATOM 1740 CA ASP A 232 49.939 19.910 33.723 1.00 16.84 C </line>
<line>ATOM 1748 CA LEU A 233 50.879 21.350 37.113 1.00 15.03 C </line>
<line>ATOM 1756 CA ASP A 234 54.558 20.358 37.041 1.00 16.79 C </line>
<line>ATOM 1764 CA LYS A 235 55.008 21.467 33.433 1.00 23.20 C </line>
<line>ATOM 1773 CA ASP A 236 53.521 24.870 34.339 1.00 16.71 C </line>
</atom-coordinate>
<distance-map>
<line> ASP LYS ASP LEU ASP GLY THR ALA PHE GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.53 8.81 8.51 5.91 7.96 8.12 8.71 6.95 5.74 3.80 </line>
<line>GLY CA 6.06 8.13 8.10 4.64 5.14 4.59 6.41 5.89 3.81 </line>
<line>PHE CA 7.83 10.19 11.26 8.21 7.46 4.88 5.80 3.80 </line>
<line>ALA CA 6.38 8.57 10.82 8.88 7.64 5.69 3.82 </line>
<line>THR CA 6.43 6.74 9.32 7.87 5.23 3.78 </line>
<line>GLY CA 7.73 8.10 9.24 6.59 3.81 </line>
<line>ASP CA 6.15 5.31 5.70 3.80 </line>
<line>LEU CA 5.20 5.53 3.81 </line>
<line>ASP CA 5.36 3.80 </line>
<line>LYS CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLN CA 501</line>
<line>GLY CA 444</line>
<line>PHE CA 479</line>
<line>ALA CA 442</line>
<line>THR CA 342</line>
<line>GLY CA 333</line>
<line>ASP CA 310</line>
<line>LEU CA 383</line>
<line>ASP CA 315</line>
<line>LYS CA 286</line>
<line>ASP CA 402</line>
</n14>
</entryChain>
<parallel>
<x>28.149999618530273</x>
<y>-0.7110000252723694</y>
<z>-45.486000061035156</z>
</parallel>
<rotation>
<x>-0.8360000252723694</x>
<y>0.039000000804662704</y>
<z>0.546999990940094</z>
<x>0.4699999988079071</x>
<y>-0.46299999952316284</y>
<z>0.7509999871253967</z>
<x>0.28200000524520874</x>
<y>0.8849999904632568</y>
<z>0.3700000047683716</z>
</rotation>
<rmsd>0.6627259850502014</rmsd>
<dmax>1.2309370040893555</dmax>
</indel>