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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE213
Library CF
(Link to library)
Clone ID CFE213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFE213F
(Link to Original site)
Representative DNA sequence 
>CFE213 (CFE213Q) /CSM/CF/CFE2-A/CFE213Q.Seq.d/
GTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAAT
CAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXX
X
sequence update 2001. 6. 1
Translated Amino Acid sequence 
sysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
vhiqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Frame B:
fifklnintikks*n*ickinl*qklvi*kkknqkk---


Frame C:
sysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH486 (SLH486Q) /CSM/SL/SLH4-D/SLH486Q.Seq.d/                        129   9e-30
SLG462 (SLG462Q) /CSM/SL/SLG4-C/SLG462Q.Seq.d/                        129   9e-30
SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        129   9e-30
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        129   9e-30
SHL201 (SHL201Q) /CSM/SH/SHL2-A/SHL201Q.Seq.d/                        129   9e-30
SHG423 (SHG423Q) /CSM/SH/SHG4-A/SHG423Q.Seq.d/                        129   9e-30
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        129   9e-30
SHD161 (SHD161Q) /CSM/SH/SHD1-C/SHD161Q.Seq.d/                        129   9e-30
SHC463 (SHC463Q) /CSM/SH/SHC4-C/SHC463Q.Seq.d/                        129   9e-30
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        129   9e-30
own update 2002.11.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    80   9e-24  3
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   3e-23  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    80   2e-21  6
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   5e-21  2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   7e-12  1
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    62   2e-06  1
AC024960|AC024960.2 Homo sapiens chromosome 18 clone RP11-431C11 map 18, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   0.012  4
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72.    40   0.077  4
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING.    46   0.097  1
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    28   0.14   3
dna update 2004. 1.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 52,504,240
protein update 2009. 5.13
PSORT -
5' end seq. ID CFE213F
5' end seq. 
>CFE213F.Seq
GTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAAT
CAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAA---------
-
Length of 5' end seq. 111
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -