CFE631
Library CF
(Link to library)
Clone ID CFE631
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12263-1
Original site URL
Representative seq. ID CFE631Z
(Link to Original site)
Representative DNA sequence
>CFE631 (CFE631Q) /CSM/CF/CFE6-B/CFE631Q.Seq.d/
XXXXXXXXXXCAATAATTCAANANAAATCATCAGTTTTAGTATCAACAGTTATATTTTTT
ATAGGNTTATTTANGTGGNCATTAATTGAANANATTTTACATANATTTGNATTTCATTTG
GANACATCATCANATTGGGGNAACNTTTTCCATTTTTTCATTCNCGGNATTCATCATTTA
ACNCCAATGGATCAAACTCGTTTAACATTTCCNCCAGTTTTCTCTGNGNTTANTGGANAN
GGGGCTTANAAACNTTTNTTAAATTTCCCAGACNTTTTACAAATCCCTGGNANACCATGG
GCNCTCTANTCCGGNANTGCNTGNGGNTACANGCTTTACGANACNTTCCNNTACTATTTC
CATCANGCCGA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---IIQXKSSVLVSTVIFFIGLFXWXLIEXILHXFXFHLXTSSXWGNXFHFFIXGIHHLT
PMDQTRLTFPPVFSXXXGXGAXKXXLNFPDXLQIPGXPWALXSGXAXGYXLYXTFXYYFH
XA


Translated Amino Acid sequence (All Frames)
Frame A:
---nnsxxiisfsinsyifyrxixvxin*xxftxixisfgxiixlgxxfpffhsrxssfn
xngsnsfnisxsflxxxwxxglxtfxkfprxftnpwxtmgxlxrxcxxxxalrxxpxlfp
sxr


Frame B:
---IIQXKSSVLVSTVIFFIGLFXWXLIEXILHXFXFHLXTSSXWGNXFHFFIXGIHHLT
PMDQTRLTFPPVFSXXXGXGAXKXXLNFPDXLQIPGXPWALXSGXAXGYXLYXTFXYYFH
XA


Frame C:
---*fxxnhqf*yqqlyfl*xylxgh*lxxfyixlxfiwxhhxigxtfsifsfxxfii*x
qwiklv*hfxqfslxlxxxglxnxx*isqtfykslxxhgxsxpxxxxxtxftxxsxtisi
xp


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE631 (CFE631Q) /CSM/CF/CFE6-B/CFE631Q.Seq.d/ 472 e-132
SSA185 (SSA185Q) /CSM/SS/SSA1-D/SSA185Q.Seq.d/ 448 e-125
CHA280 (CHA280Q) /CSM/CH/CHA2-D/CHA280Q.Seq.d/ 448 e-125
CFI866 (CFI866Q) /CSM/CF/CFI8-C/CFI866Q.Seq.d/ 448 e-125
CFA671 (CFA671Q) /CSM/CF/CFA6-C/CFA671Q.Seq.d/ 400 e-111
CFA257 (CFA257Q) /CSM/CF/CFA2-C/CFA257Q.Seq.d/ 400 e-111
CFD520 (CFD520Q) /CSM/CF/CFD5-A/CFD520Q.Seq.d/ 367 e-101
SSK869 (SSK869Q) /CSM/SS/SSK8-C/SSK869Q.Seq.d/ 359 2e-98
SSD767 (SSD767Q) /CSM/SS/SSD7-C/SSD767Q.Seq.d/ 343 1e-93
CHC433 (CHC433Q) /CSM/CH/CHC4-B/CHC433Q.Seq.d/ 321 4e-87

own update 2002. 9.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC105998|AC105998.4 Homo sapiens chromosome 8, clone CTC-877B12, complete sequence. 44 1.4 1
AF202962|AF202962.4 Homo sapiens chromosome 8 clone XX-CTB877B12 map 8p, 4 unordered pieces. 44 1.4 1
AC117200|AC117200.3 Mus musculus chromosome 3 clone RP23-164N7, complete sequence. 42 5.4 1
AE014117|AE014117.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 42 of 57 of the complete genome. 42 5.4 1

dna update 2004. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT033295_1(BT033295|pid:none) Zea mays full-length cDNA clone ZM... 50 2e-05
EF145206_1(EF145206|pid:none) Populus trichocarpa clone WS01121_... 50 2e-05
BT053613_1(BT053613|pid:none) Medicago truncatula clone MTYFT1G-... 50 3e-05
AC084320_13(AC084320|pid:none) Oryza sativa chromosome 3 BAC OSJ... 47 2e-04
EU962225_1(EU962225|pid:none) Zea mays clone 241077 inositolphos... 45 6e-04
BT063517_1(BT063517|pid:none) Zea mays full-length cDNA clone ZM... 45 6e-04
AL080282_3(AL080282|pid:none) Arabidopsis thaliana DNA chromosom... 45 8e-04
AP008218_1420(AP008218|pid:none) Oryza sativa (japonica cultivar... 43 0.003
AY075511_1(AY075511|pid:none) Drosophila melanogaster RE63157 fu... 37 0.27

protein update 2009. 5.13
PSORT

psg: 1.00 gvh: 0.60 alm: 0.25 top: 0.40 tms: 0.07 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for CFE631 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFE631Z
3' end seq.
>CFE631Z.Seq
----------CAATAATTCAANANAAATCATCAGTTTTAGTATCAACAGTTATATTTTTT
ATAGGNTTATTTANGTGGNCATTAATTGAANANATTTTACATANATTTGNATTTCATTTG
GANACATCATCANATTGGGGNAACNTTTTCCATTTTTTCATTCNCGGNATTCATCATTTA
ACNCCAATGGATCAAACTCGTTTAACATTTCCNCCAGTTTTCTCTGNGNTTANTGGANAN
GGGGCTTANAAACNTTTNTTAAATTTCCCAGACNTTTTACAAATCCCTGGNANACCATGG
GCNCTCTANTCCGGNANTGCNTGNGGNTACANGCTTTACGANACNTTCCNNTACTATTTC
CATCANGCCGA
Length of 3' end seq. 361
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -