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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CFF382
Library CF
(Link to library)
Clone ID CFF382
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFF382P
(Link to Original site)
Representative DNA sequence 
>CFF382 (CFF382Q) /CSM/CF/CFF3-D/CFF382Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAAXXXXXXXXXXAATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTT
AAGNTGNGAATTTNANCCNCCAANACAACCAANATCCCTTGATTGGGCTNAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---MSKFPXMCLKTWXXXKXXIXXXXTTXIP*lgxk
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**fkkkktkkk---

---nvqisixvfknvxxx*xxnxxxqxnqxpliglk

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---MSKFPXMCLKTWXXXKXXIXXXXTTXIP*lgxk

Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkknqkk---

---cpnfhxcv*krggxlxxefxppxqpxsldwaxn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        155   3e-37
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        155   3e-37
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        155   3e-37
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        155   3e-37
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        155   3e-37
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/                        155   3e-37
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/                        155   3e-37
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/                        155   3e-37
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/                        155   3e-37
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/                        155   3e-37
own update 2002.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   105   6e-55  3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   105   4e-54  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   105   3e-50  6
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   105   9e-36  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   5e-28  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    88   6e-14  1
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              38   0.11   4
BX152671|BX152671.1 Danio rerio genomic clone DKEY-113L5, genomic survey sequence.    38   0.12   2
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.13   2
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72.    40   0.17   3
dna update 2004. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    54   2e-06
protein update 2008.12.26
PSORT 

 psg: 0.24  gvh: 0.40  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.35  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFF382 is nuc
5' end seq. ID CFF382F
5' end seq. 
>CFF382F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID CFF382Z
3' end seq. 
>CFF382Z.Seq
----------AATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTTAAGN
TGNGAATTTNANCCNCCAANACAACCAANATCCCTTGATTGGGCTNAAAAT
Length of 3' end seq. 101
Connected seq. ID CFF382P
Connected seq. 
>CFF382P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------AATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTT
AAGNTGNGAATTTNANCCNCCAANACAACCAANATCCCTTGATTGGGCTNAAAAT
Length of connected seq. 225
Full length Seq ID -
Full length Seq. -
Length of full length seq. -