CFF382
Library CF
(Link to library)
Clone ID CFF382
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFF382P
(Link to Original site)
Representative DNA sequence
>CFF382 (CFF382Q) /CSM/CF/CFF3-D/CFF382Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAAXXXXXXXXXXAATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTT
AAGNTGNGAATTTNANCCNCCAANACAACCAANATCCCTTGATTGGGCTNAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---MSKFPXMCLKTWXXXKXXIXXXXTTXIP*lgxk


Translated Amino Acid sequence (All Frames)
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**fkkkktkkk---

---nvqisixvfknvxxx*xxnxxxqxnqxpliglk

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---MSKFPXMCLKTWXXXKXXIXXXXTTXIP*lgxk

Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkknqkk---

---cpnfhxcv*krggxlxxefxppxqpxsldwaxn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/ 155 3e-37
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/ 155 3e-37
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/ 155 3e-37
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/ 155 3e-37
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/ 155 3e-37
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/ 155 3e-37
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/ 155 3e-37
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/ 155 3e-37
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/ 155 3e-37
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/ 155 3e-37

own update 2002.11.18
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 105 6e-55 3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 105 4e-54 4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 105 3e-50 6
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 105 9e-36 2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 5e-28 2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 88 6e-14 1
AX196294|AX196294.1 Sequence 1 from Patent WO0151627. 38 0.11 4
BX152671|BX152671.1 Danio rerio genomic clone DKEY-113L5, genomic survey sequence. 38 0.12 2
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site. 42 0.13 2
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72. 40 0.17 3
dna update 2004. 1.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 54 2e-06

protein update 2008.12.26
PSORT

psg: 0.24 gvh: 0.40 alm: 0.59 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.00
nuc: 0.35 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for CFF382 is nuc

5' end seq. ID CFF382F
5' end seq.
>CFF382F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID CFF382Z
3' end seq.
>CFF382Z.Seq
----------AATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTTAAGN
TGNGAATTTNANCCNCCAANACAACCAANATCCCTTGATTGGGCTNAAAAT
Length of 3' end seq. 101
Connected seq. ID CFF382P
Connected seq.
>CFF382P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------AATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTT
AAGNTGNGAATTTNANCCNCCAANACAACCAANATCCCTTGATTGGGCTNAAAAT
Length of connected seq. 225
Full length Seq ID -
Full length Seq. -
Length of full length seq. -