CFF487
Library CF
(Link to library)
Clone ID CFF487
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID CFF487P
(Link to Original site)
Representative DNA sequence
>CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/
AAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATAT
TTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATT
GATTTTTAATTATAAAAAAAAAAXXXXXXXXXXGTTTAATACAAGCATGTGGTCCAGATA
ATAATTACCAATGTGAATTTGTTGATAAGATATGTAACACTACTAATGACAAATGTTTAG
TAGAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAATG
ATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATA
ATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGG
AATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTG
ATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTC
CAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTG
TTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCATCAC
CAACCACTGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
nktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---LIQACGPDNNYQCEFVDKICNTTNDKCLVESCEIGFGCLAIPKNCNDNDPCTTDHCD
PAIGCYYDKFDNCDACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCE
NGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTPSPTTV


Translated Amino Acid sequence (All Frames)
Frame A:
k*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---v*ykhvvqiiitnvnlliryvtllmtnv**nlvk*vlvvlqfqkivmimihvpliiv
iql*vvimisliivmhvml*ilvlqmiyasqgnviqegthlv**tllivqalihaffhiv
kmvyvfqhtfvlqlhl*lqllpqlllqllpqllhqpllqplpqlqlqlqlhhqpl

Frame B:
nktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---fntsmwsr**lpm*ic**dm*hy**qmfsril*nrfwlscnskkl****smyh*sl*
ssyrlll**v**l*cm*ccrylyyk*fmlpkgm*skreptlfnkpy*lykh*smhffil*
kwcmysnihlysnsicnsncypncysncypncytnrysnrypnsnynsnsitnhc

Frame C:
ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk---

---LIQACGPDNNYQCEFVDKICNTTNDKCLVESCEIGFGCLAIPKNCNDNDPCTTDHCD
PAIGCYYDKFDNCDACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCE
NGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTPSPTTV

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/ 1027 0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/ 1019 0.0
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/ 1003 0.0
CHB474 (CHB474Q) /CSM/CH/CHB4-D/CHB474Q.Seq.d/ 989 0.0
SHF881 (SHF881Q) /CSM/SH/SHF8-D/SHF881Q.Seq.d/ 946 0.0
CFC857 (CFC857Q) /CSM/CF/CFC8-C/CFC857Q.Seq.d/ 946 0.0
CHQ213 (CHQ213Q) /CSM/CH/CHQ2-A/CHQ213Q.Seq.d/ 932 0.0
CHB332 (CHB332Q) /CSM/CH/CHB3-B/CHB332Q.Seq.d/ 914 0.0
AFN818 (AFN818Q) /CSM/AF/AFN8-A/AFN818Q.Seq.d/ 914 0.0
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/ 912 0.0

own update 2002. 9.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence. 40 3e-06 3
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 38 7e-06 9
AC124744|AC124744.1 Mus musculus chromosome UNK clone RP23-223E16, WORKING DRAFT SEQUENCE, 5 unordered pieces. 54 9e-06 6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 3e-05 13
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 38 1e-04 12
AC125190|AC125190.2 Mus musculus chromosome UNK clone RP23-288O24, WORKING DRAFT SEQUENCE, 3 unordered pieces. 54 1e-04 4
X16057|X16057.1 Dictyostelium discoideum DNA for cyclic nucleotide phosphodiesterase inhibitor. 56 7e-04 1
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence. 40 7e-04 2
AF220352|AF220352.1 Plasmodium falciparum 41-3 antigen gene, complete cds. 46 0.001 2
M20909|M20909.1 Dictyostelium discoideum pre-spore-specific cell surface glycoprotein PsA (D19) mRNA, complete cds. 46 0.002 2
dna update 2004. 1.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 299 6e-80
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 110 3e-23
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 78 2e-13
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 77 6e-13
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 75 2e-12
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 72 2e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 70 4e-11
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 67 4e-10
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 64 3e-09
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 64 4e-09
protein update 2009. 5.14
PSORT

psg: 0.52 gvh: 0.49 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CFF487 is cyt

5' end seq. ID CFF487F
5' end seq.
>CFF487F.Seq
AAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATAT
TTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATT
GATTTTTAATTATAAAAAAAAAA----------
Length of 5' end seq. 143
3' end seq. ID CFF487Z
3' end seq.
>CFF487Z.Seq
----------GTTTAATACAAGCATGTGGTCCAGATAATAATTACCAATGTGAATTTGTT
GATAAGATATGTAACACTACTAATGACAAATGTTTAGTAGAATCTTGTGAAATAGGTTTT
GGTTGTCTTGCAATTCCAAAAAATTGTAATGATAATGATCCATGTACCACTGATCATTGT
GATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTA
GATACTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCA
CCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGT
GAAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACT
GTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACC
GTTACCCCAACTCCAACTACAACTCCAACTCCATCACCAACCACTGTT
Length of 3' end seq. 518
Connected seq. ID CFF487P
Connected seq.
>CFF487P.Seq
AAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATAT
TTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATT
GATTTTTAATTATAAAAAAAAAA----------GTTTAATACAAGCATGTGGTCCAGATA
ATAATTACCAATGTGAATTTGTTGATAAGATATGTAACACTACTAATGACAAATGTTTAG
TAGAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAATG
ATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATA
ATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGG
AATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTG
ATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTC
CAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTG
TTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCATCAC
CAACCACTGTT
Length of connected seq. 661
Full length Seq ID -
Full length Seq. -
Length of full length seq. -