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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF487
Library CF
(Link to library)
Clone ID CFF487
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID CFF487P
(Link to Original site)
Representative DNA sequence 
>CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/
AAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATAT
TTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATT
GATTTTTAATTATAAAAAAAAAAXXXXXXXXXXGTTTAATACAAGCATGTGGTCCAGATA
ATAATTACCAATGTGAATTTGTTGATAAGATATGTAACACTACTAATGACAAATGTTTAG
TAGAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAATG
ATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATA
ATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGG
AATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTG
ATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTC
CAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTG
TTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCATCAC
CAACCACTGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---LIQACGPDNNYQCEFVDKICNTTNDKCLVESCEIGFGCLAIPKNCNDNDPCTTDHCD
PAIGCYYDKFDNCDACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCE
NGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTPSPTTV
Translated Amino Acid sequence (All Frames) 
Frame A:
k*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---v*ykhvvqiiitnvnlliryvtllmtnv**nlvk*vlvvlqfqkivmimihvpliiv
iql*vvimisliivmhvml*ilvlqmiyasqgnviqegthlv**tllivqalihaffhiv
kmvyvfqhtfvlqlhl*lqllpqlllqllpqllhqpllqplpqlqlqlqlhhqpl

Frame B:
nktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---fntsmwsr**lpm*ic**dm*hy**qmfsril*nrfwlscnskkl****smyh*sl*
ssyrlll**v**l*cm*ccrylyyk*fmlpkgm*skreptlfnkpy*lykh*smhffil*
kwcmysnihlysnsicnsncypncysncypncytnrysnrypnsnynsnsitnhc

Frame C:
ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk---

---LIQACGPDNNYQCEFVDKICNTTNDKCLVESCEIGFGCLAIPKNCNDNDPCTTDHCD
PAIGCYYDKFDNCDACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCE
NGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTPSPTTV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                       1027   0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                       1019   0.0
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                       1003   0.0
CHB474 (CHB474Q) /CSM/CH/CHB4-D/CHB474Q.Seq.d/                        989   0.0
SHF881 (SHF881Q) /CSM/SH/SHF8-D/SHF881Q.Seq.d/                        946   0.0
CFC857 (CFC857Q) /CSM/CF/CFC8-C/CFC857Q.Seq.d/                        946   0.0
CHQ213 (CHQ213Q) /CSM/CH/CHQ2-A/CHQ213Q.Seq.d/                        932   0.0
CHB332 (CHB332Q) /CSM/CH/CHB3-B/CHB332Q.Seq.d/                        914   0.0
AFN818 (AFN818Q) /CSM/AF/AFN8-A/AFN818Q.Seq.d/                        914   0.0
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/                        912   0.0
own update 2002. 9.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   3e-06  3
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   7e-06  9
AC124744|AC124744.1 Mus musculus chromosome UNK clone RP23-223E16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    54   9e-06  6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-05  13
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   1e-04  12
AC125190|AC125190.2 Mus musculus chromosome UNK clone RP23-288O24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    54   1e-04  4
X16057|X16057.1 Dictyostelium discoideum DNA for cyclic nucleotide phosphodiesterase inhibitor.    56   7e-04  1
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   7e-04  2
AF220352|AF220352.1 Plasmodium falciparum 41-3 antigen gene, complete cds.    46   0.001  2
M20909|M20909.1 Dictyostelium discoideum pre-spore-specific cell surface glycoprotein PsA (D19) mRNA, complete cds.    46   0.002  2
dna update 2004. 1.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                299   6e-80
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                110   3e-23
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 78   2e-13
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 77   6e-13
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 75   2e-12
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 72   2e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    70   4e-11
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    67   4e-10
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    64   3e-09
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    64   4e-09
protein update 2009. 5.14
PSORT 

 psg: 0.52  gvh: 0.49  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFF487 is cyt
5' end seq. ID CFF487F
5' end seq. 
>CFF487F.Seq
AAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATAT
TTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATT
GATTTTTAATTATAAAAAAAAAA----------
Length of 5' end seq. 143
3' end seq. ID CFF487Z
3' end seq. 
>CFF487Z.Seq
----------GTTTAATACAAGCATGTGGTCCAGATAATAATTACCAATGTGAATTTGTT
GATAAGATATGTAACACTACTAATGACAAATGTTTAGTAGAATCTTGTGAAATAGGTTTT
GGTTGTCTTGCAATTCCAAAAAATTGTAATGATAATGATCCATGTACCACTGATCATTGT
GATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTA
GATACTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCA
CCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGT
GAAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACT
GTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACC
GTTACCCCAACTCCAACTACAACTCCAACTCCATCACCAACCACTGTT
Length of 3' end seq. 518
Connected seq. ID CFF487P
Connected seq. 
>CFF487P.Seq
AAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATAT
TTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATT
GATTTTTAATTATAAAAAAAAAA----------GTTTAATACAAGCATGTGGTCCAGATA
ATAATTACCAATGTGAATTTGTTGATAAGATATGTAACACTACTAATGACAAATGTTTAG
TAGAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAATG
ATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATA
ATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGG
AATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTG
ATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTC
CAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTG
TTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCATCAC
CAACCACTGTT
Length of connected seq. 661
Full length Seq ID -
Full length Seq. -
Length of full length seq. -