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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF802
Library CF
(Link to library)
Clone ID CFF802
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00819-1|Contig-U16511-1
Original site URL
Representative seq. ID CFF802P
(Link to Original site)
Representative DNA sequence 
>CFF802 (CFF802Q) /CSM/CF/CFF8-A/CFF802Q.Seq.d/
GACTTTTGGTTTATCTAGTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAAT
AATAGTAATTGTACAATTTGTATCATTCCTTTTTTTTTTTTTTTNAAAAAANNAATXXXX
XXXXXXAGATTAACAANATNAACNAGNTNAACAANNTNNACNAGNTNAACAAAATNAACN
AGNTCAACAAAATNNACNAGNTNNACAAAATNNACNAGNTCNACAAAATNNACNAGNTCN
ACAAAATNNACNAGNNCAACAAAATCCCCNAGNTCNACNAGNTCNACAAAACCNACNAGN
TCNACAAAAAGNAAACNGAAAAAAAAAACNGGAAAAAAAAAACAAAAAAAAACAGAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
tfglssikfplk*y**YYKIIVIVQFVSFLFFFFXKXX---

---RLTXXTXXTXXTXXTKXTXSTKXTXXTKXTXSTKXTXSTKXTXXTKSPXSTXSTKPT
XSTKXKXKKKTGKKKQKKTE
Translated Amino Acid sequence (All Frames) 
Frame A:
dfwfi*yqvsikiiliil*nnsncticiipffffxkkx---

---RLTXXTXXTXXTXXTKXTXSTKXTXXTKXTXSTKXTXSTKXTXXTKSPXSTXSTKPT
XSTKXKXKKKTGKKKQKKTE

Frame B:
tfglssikfplk*y**YYKIIVIVQFVSFLFFFFXKXX---

---d*qxxxxxqxxxxxqnxxxqqnxxxxqnxxxxqnxxxxqnxxxqqnpxxxxxxqnxx
xxqkxnxkkkxekknkkkqk

Frame C:
llvylvssfh*nninniik***lynlyhsfffffxkxn---

---inxxnxxnxxxxxnkxnxxnkxxxxxkxxxxxkxxxxxkxxxxnkipxxxxxxktxx
xxkkxtekknxkkktkknrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF802 (CFF802Q) /CSM/CF/CFF8-A/CFF802Q.Seq.d/                         82   7e-15
CHJ306 (CHJ306Q) /CSM/CH/CHJ3-A/CHJ306Q.Seq.d/                         66   4e-10
SLA870 (SLA870Q) /CSM/SL/SLA8-C/SLA870Q.Seq.d/                         64   2e-09
SFJ705 (SFJ705Q) /CSM/SF/SFJ7-A/SFJ705Q.Seq.d/                         64   2e-09
SFH109 (SFH109Q) /CSM/SF/SFH1-A/SFH109Q.Seq.d/                         64   2e-09
CHJ684 (CHJ684Q) /CSM/CH/CHJ6-D/CHJ684Q.Seq.d/                         64   2e-09
CHD296 (CHD296Q) /CSM/CH/CHD2-D/CHD296Q.Seq.d/                         64   2e-09
CFJ782 (CFJ782Q) /CSM/CF/CFJ7-D/CFJ782Q.Seq.d/                         64   2e-09
CFJ673 (CFJ673Q) /CSM/CF/CFJ6-D/CFJ673Q.Seq.d/                         64   2e-09
CFI529 (CFI529Q) /CSM/CF/CFI5-B/CFI529Q.Seq.d/                         64   2e-09
own update 2003. 9.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    64   1e-21  3
AC096440|AC096440.4 Rattus norvegicus clone CH230-106K24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42   5.2    1
AC099272|AC099272.7 Rattus norvegicus clone CH230-20O18, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    42   5.2    1
dna update 2003.10. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5UQ57) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...    35   0.61
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    32   6.7
protein update 2008.12.27
PSORT 

 psg: 1.01  gvh: 0.45  alm: 0.25  top: 0.53  tms: 0.07  mit: 0.66  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 3.33  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: mitochondrial
	 16.0 %: Golgi
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for CFF802 is mit
5' end seq. ID CFF802F
5' end seq. 
>CFF802F.Seq
GACTTTTGGTTTATCTAGTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAAT
AATAGTAATTGTACAATTTGTATCATTCCTTTTTTTTTTTTTTTNAAAAAANNAAT----
------
Length of 5' end seq. 116
3' end seq. ID CFF802Z
3' end seq. 
>CFF802Z.Seq
----------AGATTAACAANATNAACNAGNTNAACAANNTNNACNAGNTNAACAAAATN
AACNAGNTCAACAAAATNNACNAGNTNNACAAAATNNACNAGNTCNACAAAATNNACNAG
NTCNACAAAATNNACNAGNNCAACAAAATCCCCNAGNTCNACNAGNTCNACAAAACCNAC
NAGNTCNACAAAAAGNAAACNGAAAAAAAAAACNGGAAAAAAAAAACAAAAAAAAACAGA
AAA
Length of 3' end seq. 233
Connected seq. ID CFF802P
Connected seq. 
>CFF802P.Seq
GACTTTTGGTTTATCTAGTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAAT
AATAGTAATTGTACAATTTGTATCATTCCTTTTTTTTTTTTTTTNAAAAAANNAAT----
------AGATTAACAANATNAACNAGNTNAACAANNTNNACNAGNTNAACAAAATNAACN
AGNTCAACAAAATNNACNAGNTNNACAAAATNNACNAGNTCNACAAAATNNACNAGNTCN
ACAAAATNNACNAGNNCAACAAAATCCCCNAGNTCNACNAGNTCNACAAAACCNACNAGN
TCNACAAAAAGNAAACNGAAAAAAAAAACNGGAAAAAAAAAACAAAAAAAAACAGAAAA
Length of connected seq. 349
Full length Seq ID -
Full length Seq. -
Length of full length seq. -