CFG838
Library CF
(Link to library)
Clone ID CFG838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08780-1
Original site URL
Representative seq. ID CFG838P
(Link to Original site)
Representative DNA sequence
>CFG838 (CFG838Q) /CSM/CF/CFG8-B/CFG838Q.Seq.d/
AATTTTTATTCATTTTTTTTAAAAAGATAATTATTATTATTTTTCATAAAATAATAGAAA
AATGATTGAAGAACATAATTGTTTTGAAGAATTTATAAATACAGCAGCAATTGGTGAACA
ACAAGTTTATGGTGAATATAAATCTAAATTAGATTCATTTACAGATGAAAGTAAATTACC
ATATGAATTATTATTAGAGAGAAAGAATTTAGTAGAATTGAAAATTTCTGATGAAGAATA
TAAAAAGAGTGAATCTGCATTAAAAACACCAAATCCAACATTATTACAAAAGTTTCAAAT
TAATTTTTATCAAACTATTGAATCGATTAATCAAGTATTTAAACCATCATCATCATCATC
AAATCAATCATCATCATCGTCCTCCTCGAATGAAGATGATTCATTACAAAATAAAAAGAT
TAAAGTAATGTCATGGCATCCACAACATAGATTACTTGCAGTTTGTAATAAAAATGATGT
TATTTATATCTACTATTTCCCAAATCAAGATATGTATGGTATGGGTAATGTCAGACCTTT
AACATTATGGTTTGAATTACAATCAAAAGTTTATGATATACAATGGAAACCTTTCTTACC
ATATACTTTAGCTGTTGCTTXXXXXXXXXXACATTCATACCACGTTATAATGGTAACTCA
TTATTAGTTTGGTCTCCAAAAAATGATTATCTTTTATCTTGTGGTGGTAAAACTTGTAGA
ATTTTCGATATCTCAAAATGGGATTACAATAATAAAGAATGGCCAATGTTAACAAATTAT
CAAACAGGATCATGGAATGGAAAAGGTGAATATTTAGCAGTTGCAAGTGGTGATAGAATT
CAGTTTATTCAATGTATAAATAGAGCATTTGAATCAGGTGGTGAATTAATGTATGTTGAG
AAAACTTCAACCTATAGATTACAAAATGTTGGTGGTAGTGGTGGTGGTTCAAGTAGTAGT
GAATTATTTTTAGGCGGACATATAAAGAAAATTGCATGGTCACCTGATAGTCAAAGATTG
GCTGTCATCTTTTATTTAAATAGCAAGAGTAGAAATAATGATACTTATTGTGCAATCTAT
AAAATTAAAACTTATCCTAAATTTTCTGTAACACCAAGAGGTTTCATAAGGTCAAAAGAT
CAATCAATTCAATCAGTTTCTTTTGTCCCAAATTATAAAAAAGGTTCTTTATTATCAATT
GCCTACAATGATGGAACAATTAATTTTTCCCATTATTATATCAATATAACAATAAGAAAA
NAAGATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
ifihff*kdnyyyfs*NNRKMIEEHNCFEEFINTAAIGEQQVYGEYKSKLDSFTDESKLP
YELLLERKNLVELKISDEEYKKSESALKTPNPTLLQKFQINFYQTIESINQVFKPSSSSS
NQSSSSSSSNEDDSLQNKKIKVMSWHPQHRLLAVCNKNDVIYIYYFPNQDMYGMGNVRPL
TLWFELQSKVYDIQWKPFLPYTLAVA---

---TFIPRYNGNSLLVWSPKNDYLLSCGGKTCRIFDISKWDYNNKEWPMLTNYQTGSWNG
KGEYLAVASGDRIQFIQCINRAFESGGELMYVEKTSTYRLQNVGGSGGGSSSSELFLGGH
IKKIAWSPDSQRLAVIFYLNSKSRNNDTYCAIYKIKTYPKFSVTPRGFIRSKDQSIQSVS
FVPNYKKGSLLSIAYNDGTINFSHYYINITIRKXD


Translated Amino Acid sequence (All Frames)
Frame A:
nfysfflkr*lllffik**knd*rt*lf*riykyssnw*ttslw*i*i*irfiyr*k*it
i*iiirekefsrienf**ri*ke*icikntksniitkvsn*flsny*id*ssi*tiiiii
ksiiiivlle*r*fitk*kd*snvmastt*itcsl**k*cylyllfpksryvwyg*cqtf
nimv*itiksl*ytmetfltiyfscc---

---TFIPRYNGNSLLVWSPKNDYLLSCGGKTCRIFDISKWDYNNKEWPMLTNYQTGSWNG
KGEYLAVASGDRIQFIQCINRAFESGGELMYVEKTSTYRLQNVGGSGGGSSSSELFLGGH
IKKIAWSPDSQRLAVIFYLNSKSRNNDTYCAIYKIKTYPKFSVTPRGFIRSKDQSIQSVS
FVPNYKKGSLLSIAYNDGTINFSHYYINITIRKXD

Frame B:
ifihff*kdnyyyfs*NNRKMIEEHNCFEEFINTAAIGEQQVYGEYKSKLDSFTDESKLP
YELLLERKNLVELKISDEEYKKSESALKTPNPTLLQKFQINFYQTIESINQVFKPSSSSS
NQSSSSSSSNEDDSLQNKKIKVMSWHPQHRLLAVCNKNDVIYIYYFPNQDMYGMGNVRPL
TLWFELQSKVYDIQWKPFLPYTLAVA---

---hsyhvimvthy*fglqkmiifylvvvklvefsisqngitiikngqc*qiikqdhgme
kvni*qlqvviefslfnv*iehlnqvvn*cmlrklqpidykmlvvvvvvqvvvnyf*adi
*rklhghlivkdwlssfi*iarveimilivqsiklklilnfl*hqevs*gqkinqfnqfl
lsqiikkvlyyqlptmmeqlifpiiisi*q*exki

Frame C:
flfiffkkiiiiifhkiiek*lkniivlknl*iqqqlvnnkfmvninln*ihlqmkvnyh
mnyy*reri**n*kflmknikrvnlh*khqiqhyyksfklifikllnrlikylnhhhhhq
inhhhrpprmkmihykikrlk*chgihnidylqfvikmmlfistisqikicmvwvmsdl*
hyglnynqkfmiyngnlsyhil*lll---

---ihttl*w*liislvskk*lsfilww*nl*nfrylkmglq**rmanvnklsnrimewk
r*ifssckw**nsvysmyk*si*irw*invc*enfnl*itkcww*wwwfk***iifrrty
kencmvt**skigchllfk*qe*k**yllcnl*n*nls*ifcntkrfhkvkrsinsisff
cpkl*krffiinclq*wnn*ffpllyqynnkkxrf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG838 (CFG838Q) /CSM/CF/CFG8-B/CFG838Q.Seq.d/ 1699 0.0
VFI871 (VFI871Q) /CSM/VF/VFI8-C/VFI871Q.Seq.d/ 1221 0.0
SSK827 (SSK827Q) /CSM/SS/SSK8-B/SSK827Q.Seq.d/ 1221 0.0
AFI409 (AFI409Q) /CSM/AF/AFI4-A/AFI409Q.Seq.d/ 1221 0.0
AFH742 (AFH742Q) /CSM/AF/AFH7-B/AFH742Q.Seq.d/ 1221 0.0
CFG822 (CFG822Q) /CSM/CF/CFG8-A/CFG822Q.Seq.d/ 496 e-139
SSE416 (SSE416Q) /CSM/SS/SSE4-A/SSE416Q.Seq.d/ 92 2e-17
VSB478 (VSB478Q) /CSM/VS/VSB4-D/VSB478Q.Seq.d/ 76 1e-12
VSC172 (VSC172Q) /CSM/VS/VSC1-C/VSC172Q.Seq.d/ 46 0.001
VHH302 (VHH302Q) /CSM/VH/VHH3-A/VHH302Q.Seq.d/ 46 0.001

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 829 0.0 12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 1e-12 17
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 44 3e-12 23
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 1e-10 21
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 40 1e-10 18
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 42 1e-10 22
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 4e-10 21
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence. 34 8e-10 21
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12 section 4 of 9 of the complete sequence. 34 2e-09 19
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 34 2e-09 23
dna update 2004. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115581_9(AC115581|pid:none) Dictyostelium discoideum chromosom... 390 e-107
BC077988_1(BC077988|pid:none) Xenopus laevis achalasia, adrenoco... 81 9e-14
BC067671_1(BC067671|pid:none) Danio rerio achalasia, adrenocorti... 68 6e-10
AK088247_1(AK088247|pid:none) Mus musculus 2 days neonate thymus... 65 5e-09
AY891872_1(AY891872|pid:none) Synthetic construct Homo sapiens c... 62 3e-08
AK222509_1(AK222509|pid:none) Homo sapiens mRNA for achalasia, a... 62 3e-08
(Q9NRG9) RecName: Full=Aladin; AltName: Full=Adracalin; &AF2260... 62 3e-08
AK000833_1(AK000833|pid:none) Homo sapiens cDNA FLJ20826 fis, cl... 62 4e-08
BC120418_1(BC120418|pid:none) Bos taurus achalasia, adrenocortic... 60 1e-07
AK087134_1(AK087134|pid:none) Mus musculus 0 day neonate lung cD... 58 8e-07
protein update 2009. 5.14
PSORT

psg: 0.63 gvh: 0.36 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
12.0 %: mitochondrial

>> prediction for CFG838 is cyt

5' end seq. ID CFG838F
5' end seq.
>CFG838F.Seq
AATTTTTATTCATTTTTTTTAAAAAGATAATTATTATTATTTTTCATAAAATAATAGAAA
AATGATTGAAGAACATAATTGTTTTGAAGAATTTATAAATACAGCAGCAATTGGTGAACA
ACAAGTTTATGGTGAATATAAATCTAAATTAGATTCATTTACAGATGAAAGTAAATTACC
ATATGAATTATTATTAGAGAGAAAGAATTTAGTAGAATTGAAAATTTCTGATGAAGAATA
TAAAAAGAGTGAATCTGCATTAAAAACACCAAATCCAACATTATTACAAAAGTTTCAAAT
TAATTTTTATCAAACTATTGAATCGATTAATCAAGTATTTAAACCATCATCATCATCATC
AAATCAATCATCATCATCGTCCTCCTCGAATGAAGATGATTCATTACAAAATAAAAAGAT
TAAAGTAATGTCATGGCATCCACAACATAGATTACTTGCAGTTTGTAATAAAAATGATGT
TATTTATATCTACTATTTCCCAAATCAAGATATGTATGGTATGGGTAATGTCAGACCTTT
AACATTATGGTTTGAATTACAATCAAAAGTTTATGATATACAATGGAAACCTTTCTTACC
ATATACTTTAGCTGTTGCTT----------
Length of 5' end seq. 620
3' end seq. ID CFG838Z
3' end seq.
>CFG838Z.Seq
----------ACATTCATACCACGTTATAATGGTAACTCATTATTAGTTTGGTCTCCAAA
AAATGATTATCTTTTATCTTGTGGTGGTAAAACTTGTAGAATTTTCGATATCTCAAAATG
GGATTACAATAATAAAGAATGGCCAATGTTAACAAATTATCAAACAGGATCATGGAATGG
AAAAGGTGAATATTTAGCAGTTGCAAGTGGTGATAGAATTCAGTTTATTCAATGTATAAA
TAGAGCATTTGAATCAGGTGGTGAATTAATGTATGTTGAGAAAACTTCAACCTATAGATT
ACAAAATGTTGGTGGTAGTGGTGGTGGTTCAAGTAGTAGTGAATTATTTTTAGGCGGACA
TATAAAGAAAATTGCATGGTCACCTGATAGTCAAAGATTGGCTGTCATCTTTTATTTAAA
TAGCAAGAGTAGAAATAATGATACTTATTGTGCAATCTATAAAATTAAAACTTATCCTAA
ATTTTCTGTAACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTC
TTTTGTCCCAAATTATAAAAAAGGTTCTTTATTATCAATTGCCTACAATGATGGAACAAT
TAATTTTTCCCATTATTATATCAATATAACAATAAGAAAANAAGATTT
Length of 3' end seq. 638
Connected seq. ID CFG838P
Connected seq.
>CFG838P.Seq
AATTTTTATTCATTTTTTTTAAAAAGATAATTATTATTATTTTTCATAAAATAATAGAAA
AATGATTGAAGAACATAATTGTTTTGAAGAATTTATAAATACAGCAGCAATTGGTGAACA
ACAAGTTTATGGTGAATATAAATCTAAATTAGATTCATTTACAGATGAAAGTAAATTACC
ATATGAATTATTATTAGAGAGAAAGAATTTAGTAGAATTGAAAATTTCTGATGAAGAATA
TAAAAAGAGTGAATCTGCATTAAAAACACCAAATCCAACATTATTACAAAAGTTTCAAAT
TAATTTTTATCAAACTATTGAATCGATTAATCAAGTATTTAAACCATCATCATCATCATC
AAATCAATCATCATCATCGTCCTCCTCGAATGAAGATGATTCATTACAAAATAAAAAGAT
TAAAGTAATGTCATGGCATCCACAACATAGATTACTTGCAGTTTGTAATAAAAATGATGT
TATTTATATCTACTATTTCCCAAATCAAGATATGTATGGTATGGGTAATGTCAGACCTTT
AACATTATGGTTTGAATTACAATCAAAAGTTTATGATATACAATGGAAACCTTTCTTACC
ATATACTTTAGCTGTTGCTT----------ACATTCATACCACGTTATAATGGTAACTCA
TTATTAGTTTGGTCTCCAAAAAATGATTATCTTTTATCTTGTGGTGGTAAAACTTGTAGA
ATTTTCGATATCTCAAAATGGGATTACAATAATAAAGAATGGCCAATGTTAACAAATTAT
CAAACAGGATCATGGAATGGAAAAGGTGAATATTTAGCAGTTGCAAGTGGTGATAGAATT
CAGTTTATTCAATGTATAAATAGAGCATTTGAATCAGGTGGTGAATTAATGTATGTTGAG
AAAACTTCAACCTATAGATTACAAAATGTTGGTGGTAGTGGTGGTGGTTCAAGTAGTAGT
GAATTATTTTTAGGCGGACATATAAAGAAAATTGCATGGTCACCTGATAGTCAAAGATTG
GCTGTCATCTTTTATTTAAATAGCAAGAGTAGAAATAATGATACTTATTGTGCAATCTAT
AAAATTAAAACTTATCCTAAATTTTCTGTAACACCAAGAGGTTTCATAAGGTCAAAAGAT
CAATCAATTCAATCAGTTTCTTTTGTCCCAAATTATAAAAAAGGTTCTTTATTATCAATT
GCCTACAATGATGGAACAATTAATTTTTCCCATTATTATATCAATATAACAATAAGAAAA
NAAGATTT
Length of connected seq. 1258
Full length Seq ID -
Full length Seq. -
Length of full length seq. -