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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH601
Library CF
(Link to library)
Clone ID CFH601
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFH601P
(Link to Original site)
Representative DNA sequence 
>CFH601 (CFH601Q) /CSM/CF/CFH6-A/CFH601Q.Seq.d/
ATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAA
AAAAAAAAAAAAAAAAATTAAAAAATCANCTTTTTTGAAAAAAAAAAXXXXXXXXXXTTN
NNAATTTNAANNNAAANTNNANANAAANAGGTTTNCNCCANATNAANAANNTTTNATTTN
NNTGGTAANNATTANAAAANGNNGGANNNTNTNTNATNNNAANTTNCAAAAANAATNACT
NTTCCANTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTGTCAAANCATTANCTGG
TAAGNCCATCACTCTTGAAGTGAGGGCTCAGATAATATTGAAAATGTTAAANCAAANATT
CAAGACAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTCGCTGGTAANCAATTA
GAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTC
CTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACA
CTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAA
GGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGT
ACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGA
GGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAA
GGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCA
sequence update 2001.11.22
Translated Amino Acid sequence 
lyky*ihilffyil*HFIKKKKKKKIKKSXFLKKK---

---XXFXXKXXXXRFXPXXXXXIXXVXIXKXXXXXXXXXQKXXLFXLVLXLXGGMQXFVK
XLXGKXITLEVRAQIILKMLXQXFKTKKVSXQTNKD*fslvxn*kmvvlslittfkrnpl
si*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnw
rmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkk
vshqi
Translated Amino Acid sequence (All Frames) 
Frame A:
iiqilnsyfiflyivtfhkkkkkkkn*kixffekk---

---xxixxxxxxkxvxxxxxxfxxxgxxxkxxxxxxxxxxkxxtxpxgpxixrwyanxcq
xixw*xhhs*segsdnienvkxxiqdkegippdqqrlifagxqledgrtlsdyniqkest
lhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkql
edgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdke
gippd

Frame B:
lyky*ihilffyil*HFIKKKKKKKIKKSXFLKKK---

---XXFXXKXXXXRFXPXXXXXIXXVXIXKXXXXXXXXXQKXXLFXLVLXLXGGMQXFVK
XLXGKXITLEVRAQIILKMLXQXFKTKKVSXQTNKD*fslvxn*kmvvlslittfkrnpl
si*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnw
rmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkk
vshqi

Frame C:
ytnikfifyffiycnis*kkkkkkklknxlf*kkk---

---xnxxxxxxxxgxxxxxxxxfxw*xlxxxgxxxxxxxkxnxxsxwssx*xvvckxlsx
hxlvxpsllk*glr*y*kc*xkxsrqrrypxrptkinfrw*xirrwsysl*lqhskgihs
pfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*tig
gwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrr
yptrs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH601 (CFH601Q) /CSM/CF/CFH6-A/CFH601Q.Seq.d/                       1144   0.0
SFH711 (SFH711Q) /CSM/SF/SFH7-A/SFH711Q.Seq.d/                       1116   0.0
SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/                       1116   0.0
SFF543 (SFF543Q) /CSM/SF/SFF5-B/SFF543Q.Seq.d/                       1116   0.0
SFD428 (SFD428Q) /CSM/SF/SFD4-B/SFD428Q.Seq.d/                       1116   0.0
SFD191 (SFD191Q) /CSM/SF/SFD1-D/SFD191Q.Seq.d/                       1116   0.0
SFC119 (SFC119Q) /CSM/SF/SFC1-A/SFC119Q.Seq.d/                       1116   0.0
SFB344 (SFB344Q) /CSM/SF/SFB3-B/SFB344Q.Seq.d/                       1116   0.0
CHE361 (CHE361Q) /CSM/CH/CHE3-C/CHE361Q.Seq.d/                       1116   0.0
CHC240 (CHC240Q) /CSM/CH/CHC2-B/CHC240Q.Seq.d/                       1116   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1009   0.0    3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1001   0.0    4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1001   0.0    3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   648   0.0    2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   609   e-170  3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   593   e-165  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   460   e-135  3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   460   e-135  3
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.   174   6e-86  5
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   165   2e-84  4
dna update 2004. 2. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   336   6e-96
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   336   6e-96
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   336   6e-96
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   334   2e-95
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   334   1e-91
AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene...   317   9e-91
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu...   318   2e-90
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub...   318   2e-90
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit...   318   2e-90
AE014296_755(AE014296|pid:none) Drosophila melanogaster chromoso...   318   2e-90
protein update 2009. 5.15
PSORT 

 psg: 0.59  gvh: 0.43  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.47  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for CFH601 is nuc
5' end seq. ID CFH601F
5' end seq. 
>CFH601F.Seq
ATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAA
AAAAAAAAAAAAAAAAATTAAAAAATCANCTTTTTTGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 117
3' end seq. ID CFH601Z
3' end seq. 
>CFH601Z.Seq
NNNNNNNNNNTTNNNAATTTNAANNNAAANTNNANANAAANAGGTTTNCNCCANATNAAN
AANNTTTNATTTNNNTGGTAANNATTANAAAANGNNGGANNNTNTNTNATNNNAANTTNC
AAAAANAATNACTNTTCCANTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTGTCA
AANCATTANCTGGTAAGNCCATCACTCTTGAAGTGAGGGCTCAGATAATATTGAAAATGT
TAAANCAAANATTCAAGACAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTCGC
TGGTAANCAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCAC
TCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGG
TAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAAT
CCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATT
GGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGT
TCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTAC
ACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGA
AGGTATCCCACCAGATCA
Length of 3' end seq. 738
Connected seq. ID CFH601P
Connected seq. 
>CFH601P.Seq
ATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAA
AAAAAAAAAAAAAAAAATTAAAAAATCANCTTTTTTGAAAAAAAAAA----------TTN
NNAATTTNAANNNAAANTNNANANAAANAGGTTTNCNCCANATNAANAANNTTTNATTTN
NNTGGTAANNATTANAAAANGNNGGANNNTNTNTNATNNNAANTTNCAAAAANAATNACT
NTTCCANTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTGTCAAANCATTANCTGG
TAAGNCCATCACTCTTGAAGTGAGGGCTCAGATAATATTGAAAATGTTAAANCAAANATT
CAAGACAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTCGCTGGTAANCAATTA
GAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTC
CTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACA
CTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAA
GGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGT
ACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGA
GGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAA
GGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCA
Length of connected seq. 835
Full length Seq ID -
Full length Seq. -
Length of full length seq. -