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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI279
Library CF
(Link to library)
Clone ID CFI279
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID CFI279P
(Link to Original site)
Representative DNA sequence 
>CFI279 (CFI279Q) /CSM/CF/CFI2-D/CFI279Q.Seq.d/
ATTTGTTTATATGAACATTTAATAAATAAAACACAATAAAAATNATATTATTTATATATT
TATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACA
TTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXXXXXXANNNN
ANGNNNNNNNNNANNNNNNNNNCNNNGNNNNANNNNNNNNATNNNNNGNNNNANNNNTNA
NNNANGCNNTNTTTNNNNNTGTNNNAATNGTGTATGNATTNNNNCANNCNTNTGNNCNNN
NNCTCNATNTGTANCTNNNNCTGTNNCNNCNNCTGTNACTNCNNCTGTNACNNCANCTGT
TACANCANCCGTTACTCCAACCGTTACCCCAACTCCAA
sequence update 2001.11.22
Translated Amino Acid sequence 
lfi*tfnk*ntikxilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---XXXXXXXXXXXXXXXXXXXXXXXXXXXXCXNXVXIXXXXXXXXXXVXXXVXXXVTXX
VTXXVTXXVTPTVTPTP
Translated Amino Acid sequence (All Frames) 
Frame A:
iclyehlinktq*kxyylyiysnii*ifknwktffknwktllkkein*fliikkk---

---XXXXXXXXXXXXXXXXXXXXXXXXXXXXCXNXVXIXXXXXXXXXXVXXXVXXXVTXX
VTXXVTXXVTPTVTPTP

Frame B:
fvymni**ikhnknxiiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---xxxxxxxxxxxxxxxxxxxxxxxaxfxxvxxvyxxxxxxxxxlxxxlxlxxxlxlxl
xxxllxxpllqplpqlq

Frame C:
lfi*tfnk*ntikxilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcmxxxxxxxxxsxcxxxcxxxcxxxc
xxxcyxxrysnrypns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI279 (CFI279Q) /CSM/CF/CFI2-D/CFI279Q.Seq.d/                        123   2e-27
CFB605 (CFB605Q) /CSM/CF/CFB6-A/CFB605Q.Seq.d/                        117   1e-25
CFB127 (CFB127Q) /CSM/CF/CFB1-B/CFB127Q.Seq.d/                        115   5e-25
SFL402 (SFL402Q) /CSM/SF/SFL4-A/SFL402Q.Seq.d/                        103   2e-21
CFB308 (CFB308Q) /CSM/CF/CFB3-A/CFB308Q.Seq.d/                        103   2e-21
SFL207 (SFL207Q) /CSM/SF/SFL2-A/SFL207Q.Seq.d/                        101   8e-21
SFL206 (SFL206Q) /CSM/SF/SFL2-A/SFL206Q.Seq.d/                        101   8e-21
CFA330 (CFA330Q) /CSM/CF/CFA3-B/CFA330Q.Seq.d/                        101   8e-21
SLI746 (SLI746Q) /CSM/SL/SLI7-B/SLI746Q.Seq.d/                         96   5e-19
SHK570 (SHK570Q) /CSM/SH/SHK5-C/SHK570Q.Seq.d/                         96   5e-19
own update 2002. 9.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   2e-04  2
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   0.005  7
AX349036|AX349036.1 Sequence 494 from Patent WO0202807.            40   0.011  3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   0.014  7
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    32   0.015  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.027  6
CF342629|CF342629.1 AGENCOURT_15224176 NICHD_XGC_Swb1 Silurana tropicalis cDNA clone IMAGE:7000111 5', mRNA sequence.    40   0.031  2
CF342630|CF342630.1 AGENCOURT_15224162 NICHD_XGC_Swb1 Silurana tropicalis cDNA clone IMAGE:7000111 5', mRNA sequence.    40   0.032  2
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36   0.036  8
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    38   0.038  6
dna update 2003.12.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 232,951,478
protein update 2009. 5.15
PSORT 

 psg: 0.52  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFI279 is mit
5' end seq. ID CFI279F
5' end seq. 
>CFI279F.Seq
ATTTGTTTATATGAACATTTAATAAATAAAACACAATAAAAATNATATTATTTATATATT
TATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACA
TTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 175
3' end seq. ID CFI279Z
3' end seq. 
>CFI279Z.Seq
NNNNNNNNNNANNNNANGNNNNNNNNNANNNNNNNNNCNNNGNNNNANNNNNNNNATNNN
NNGNNNNANNNNTNANNNANGCNNTNTTTNNNNNTGTNNNAATNGTGTATGNATTNNNNC
ANNCNTNTGNNCNNNNNCTCNATNTGTANCTNNNNCTGTNNCNNCNNCTGTNACTNCNNC
TGTNACNNCANCTGTTACANCANCCGTTACTCCAACCGTTACCCCAACTCCAA
Length of 3' end seq. 233
Connected seq. ID CFI279P
Connected seq. 
>CFI279P.Seq
ATTTGTTTATATGAACATTTAATAAATAAAACACAATAAAAATNATATTATTTATATATT
TATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACA
TTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------ANNNN
ANGNNNNNNNNNANNNNNNNNNCNNNGNNNNANNNNNNNNATNNNNNGNNNNANNNNTNA
NNNANGCNNTNTTTNNNNNTGTNNNAATNGTGTATGNATTNNNNCANNCNTNTGNNCNNN
NNCTCNATNTGTANCTNNNNCTGTNNCNNCNNCTGTNACTNCNNCTGTNACNNCANCTGT
TACANCANCCGTTACTCCAACCGTTACCCCAACTCCAA
Length of connected seq. 388
Full length Seq ID -
Full length Seq. -
Length of full length seq. -