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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB672
Library CH
(Link to library)
Clone ID CHB672
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CHB672P
(Link to Original site)
Representative DNA sequence 
>CHB672 (CHB672Q) /CSM/CH/CHB6-C/CHB672Q.Seq.d/
ATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAAAAA
AAAAAAAAAAAAAATTTAAAAANTCCCCTTTTTTGAAAAAAAAAAXXXXXXXXXXTTTTN
NNNNGNNANNNNTTNNNANNNNGTNNGNNTNTNTNTNNTNNNANNTNNNAAAANNAATNN
NTNTNNNNNTTGGTNNTTAGNTTAAGNGGNTGGTANNNAANTNTTTGTNNAACATTANTG
GTAAGNCNATNANTNTTNAAGTTGAGGGNTNANATAATNTTNANNATGTTNNANCNAANA
TTNAAGNCAAAGNAGGTATNCCNNCANACCAACAAAGATTAATTTTNGNTGGTAANCAAT
TANAAGATGGTNGACTNTNTNTGATTNCAACATTCAAAAGGAATCCGCTNTCCATTTAGT
CNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCANTGGTAAGACTATTAC
ACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGA
AGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCG
TACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAG
AGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGA
AGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACC
AGATCAACTANGT
sequence update 2002.10.25
Translated Amino Acid sequence 
tnikfifyffiycnis*KKKKKKKFKXSPFLKKK---

---XXXXXXXXXXXXXXXXXXXXXXXXLVXXLXGWXXXXCXTLXVXXXXXKLRXXIXXXM
XXXXXKXKXVXXXTNKD*fxxvxnxkmvdxx*xqhskgirxpfsxqikrwyanfcqnpxw
*dyytxs*rf**h*ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfs
sqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrryptrstx
Translated Amino Acid sequence (All Frames) 
Frame A:
iqilnsyfiflyivtfhkkkkkkknlkxplf*kkk---

---fxxxxxxxxvxxxxxxxxkxnxxxxwxlx*xxgxxxfvxhxw*xxxxxs*gxx*xxx
cxxxxxxqxryxxxptkinfxw*xixrwxtxxdxniqkesaxhlvxrlrggmqifvktlx
gktitlevegsdnienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhl
vlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippdqlx

Frame B:
yky*ihilffyil*hfikkkkkkki*kxpffekk---

---fxxxxxxxxxxxxxxxxxkxxxxxxgx*xkxxvxxxlxnixgkxxxxxvegxxnxxx
vxxxixxkxgxpxxqqrlixxgxqlxdgxlxxixtfkrnplsi*ssd*evvckflskpsx
vrllhxklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*
fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkvshqinx

Frame C:
tnikfifyffiycnis*KKKKKKKFKXSPFLKKK---

---XXXXXXXXXXXXXXXXXXXXXXXXLVXXLXGWXXXXCXTLXVXXXXXKLRXXIXXXM
XXXXXKXKXVXXXTNKD*fxxvxnxkmvdxx*xqhskgirxpfsxqikrwyanfcqnpxw
*dyytxs*rf**h*ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfs
sqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrryptrstx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB672 (CHB672Q) /CSM/CH/CHB6-C/CHB672Q.Seq.d/                        888   0.0
CFH123 (CFH123Q) /CSM/CF/CFH1-A/CFH123Q.Seq.d/                        846   0.0
CFC246 (CFC246Q) /CSM/CF/CFC2-B/CFC246Q.Seq.d/                        846   0.0
AFL448 (AFL448Q) /CSM/AF/AFL4-B/AFL448Q.Seq.d/                        846   0.0
AFI773 (AFI773Q) /CSM/AF/AFI7-D/AFI773Q.Seq.d/                        846   0.0
SFJ493 (SFJ493Q) /CSM/SF/SFJ4-D/SFJ493Q.Seq.d/                        844   0.0
SFI208 (SFI208Q) /CSM/SF/SFI2-A/SFI208Q.Seq.d/                        844   0.0
CFH562 (CFH562Q) /CSM/CF/CFH5-C/CFH562Q.Seq.d/                        844   0.0
VFK823 (VFK823Q) /CSM/VF/VFK8-A/VFK823Q.Seq.d/                        842   0.0
VFJ305 (VFJ305Q) /CSM/VF/VFJ3-A/VFJ305Q.Seq.d/                        842   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   761   0.0    3
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   769   0.0    2
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   761   0.0    2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   454   e-138  3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   444   e-136  3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   428   e-131  2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   365   e-100  3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   373   e-100  3
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   103   2e-61  5
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   103   2e-61  5
dna update 2004. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   256   1e-71
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   256   1e-71
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   256   1e-71
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   254   4e-71
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   254   4e-71
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   245   5e-67
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   245   5e-67
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526...   245   5e-67
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   245   6e-67
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   245   6e-67
protein update 2009. 3.29
PSORT 

 psg: 0.55  gvh: 0.61  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.40  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHB672 is nuc
5' end seq. ID CHB672F
5' end seq. 
>CHB672F.Seq
ATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAAAAA
AAAAAAAAAAAAAATTTAAAAANTCCCCTTTTTTGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 115
3' end seq. ID CHB672Z
3' end seq. 
>CHB672Z.Seq
NNNNNNNNNNTTTTNNNNNGNNANNNNTTNNNANNNNGTNNGNNTNTNTNTNNTNNNANN
TNNNAAAANNAATNNNTNTNNNNNTTGGTNNTTAGNTTAAGNGGNTGGTANNNAANTNTT
TGTNNAACATTANTGGTAAGNCNATNANTNTTNAAGTTGAGGGNTNANATAATNTTNANN
ATGTTNNANCNAANATTNAAGNCAAAGNAGGTATNCCNNCANACCAACAAAGATTAATTT
TNGNTGGTAANCAATTANAAGATGGTNGACTNTNTNTGATTNCAACATTCAAAAGGAATC
CGCTNTCCATTTAGTCNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCAN
TGGTAAGACTATTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAA
AATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACA
ATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTT
AGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCAT
TACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAA
AGAAGGTATCCCACCAGATCAACTANGT
Length of 3' end seq. 688
Connected seq. ID CHB672P
Connected seq. 
>CHB672P.Seq
ATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAAAAA
AAAAAAAAAAAAAATTTAAAAANTCCCCTTTTTTGAAAAAAAAAA----------TTTTN
NNNNGNNANNNNTTNNNANNNNGTNNGNNTNTNTNTNNTNNNANNTNNNAAAANNAATNN
NTNTNNNNNTTGGTNNTTAGNTTAAGNGGNTGGTANNNAANTNTTTGTNNAACATTANTG
GTAAGNCNATNANTNTTNAAGTTGAGGGNTNANATAATNTTNANNATGTTNNANCNAANA
TTNAAGNCAAAGNAGGTATNCCNNCANACCAACAAAGATTAATTTTNGNTGGTAANCAAT
TANAAGATGGTNGACTNTNTNTGATTNCAACATTCAAAAGGAATCCGCTNTCCATTTAGT
CNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCANTGGTAAGACTATTAC
ACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGA
AGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCG
TACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAG
AGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGA
AGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACC
AGATCAACTANGT
Length of connected seq. 783
Full length Seq ID -
Full length Seq. -
Length of full length seq. -