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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC113
Library CH
(Link to library)
Clone ID CHC113
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID CHC113P
(Link to Original site)
Representative DNA sequence 
>CHC113 (CHC113Q) /CSM/CH/CHC1-A/CHC113Q.Seq.d/
ACTGTTGGCCTACTGGAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAATA
AAAATCAATATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAA
CATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAA
AAAAAAAAXXXXXXXXXXAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAA
TGATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGA
TAATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAG
GGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCAC
TGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTAC
TCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAAC
TGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywnlfvsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYK
KK---

---GFGCLAIPKNCNDNDPCTTDHCDPAIGCYYDKFDNCDACNAVDTCITNDLCFPRECN
PRGNPPCLINPINCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTP
TVTPTVTPTPT
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglleficfi*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*
kk---

---rfwlscnskkl****smyh*sl*ssyrlll**v**l*cm*ccrylyyk*fmlpkgm*
skreptlfnkpy*lykh*smhffil*kwcmysnihlysnsicnsncypncysncypncyt
nrysnrypnsn

Frame B:
llaywnlfvsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYK
KK---

---GFGCLAIPKNCNDNDPCTTDHCDPAIGCYYDKFDNCDACNAVDTCITNDLCFPRECN
PRGNPPCLINPINCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTP
TVTPTVTPTPT

Frame C:
cwptgiylfhmni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliik
kk---

---vlvvlqfqkivmimihvpliiviql*vvimisliivmhvml*ilvlqmiyasqgnvi
qegthlv**tllivqalihaffhivkmvyvfqhtfvlqlhl*lqllpqlllqllpqllhq
pllqplpqlql
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/                        765   0.0
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        765   0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        765   0.0
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/                        765   0.0
CHC113 (CHC113Q) /CSM/CH/CHC1-A/CHC113Q.Seq.d/                        765   0.0
CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                        765   0.0
CFC857 (CFC857Q) /CSM/CF/CFC8-C/CFC857Q.Seq.d/                        765   0.0
CFC681 (CFC681Q) /CSM/CF/CFC6-D/CFC681Q.Seq.d/                        765   0.0
CFB308 (CFB308Q) /CSM/CF/CFB3-A/CFB308Q.Seq.d/                        765   0.0
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/                        765   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-07  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   6e-06  15
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   7e-06  8
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    36   8e-06  11
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   9e-06  17
CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   1e-05  3
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         34   9e-05  15
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    36   1e-04  11
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12 section 5 of 9 of the complete sequence.    34   2e-04  11
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   2e-04  9
dna update 2004. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                224   1e-57
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 90   5e-17
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 71   2e-11
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 69   7e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    62   8e-09
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 62   1e-08
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 59   7e-08
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    57   5e-07
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    52   9e-06
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    52   9e-06
protein update 2009. 3.29
PSORT 

 psg: 0.52  gvh: 0.26  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHC113 is nuc
5' end seq. ID CHC113F
5' end seq. 
>CHC113F.Seq
ACTGTTGGCCTACTGGAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAATA
AAAATCAATATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAA
CATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 198
3' end seq. ID CHC113Z
3' end seq. 
>CHC113Z.Seq
NNNNNNNNNNAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAATGATCCAT
GTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAATTGTG
ATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTA
ATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCAT
GCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTC
CATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACAC
CAACCGTTACTCCAACCGTTACCCCAACTCCAACTA
Length of 3' end seq. 396
Connected seq. ID CHC113P
Connected seq. 
>CHC113P.Seq
ACTGTTGGCCTACTGGAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAATA
AAAATCAATATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAA
CATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAA
AAAAAAAA----------AGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAA
TGATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGA
TAATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAG
GGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCAC
TGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTAC
TCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAAC
TGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTA
Length of connected seq. 574
Full length Seq ID -
Full length Seq. -
Length of full length seq. -