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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC347
Library CH
(Link to library)
Clone ID CHC347
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHC347P
(Link to Original site)
Representative DNA sequence 
>CHC347 (CHC347Q) /CSM/CH/CHC3-B/CHC347Q.Seq.d/
ACTGTTGGCCTACTGGTTATGAACATTTAATAAATAAAACACAATAAAAATCAATATTAT
TTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAAT
TGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXX
XXXXAAATAGGTTTTGGTTGTCTTGCAATNCCAAAAAATTGTAATGATAATGATCCATGT
ACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAATTGTGAT
GCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTAAT
CCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCATGC
ATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTCCA
TCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCA
ACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCATACACTGCNCCT
CAGTG
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---IGFGCLAXPKNCNDNDPCTTDHCDPAIGCYYDKFDNCDACNAVDTCITNDLCFPREC
NPRGNPPCLINPINCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVT
PTVTPTVTPTPTTTPTPYTAPQ
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvmni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk--
-

---k*vlvvlqxqkivmimihvpliiviql*vvimisliivmhvml*ilvlqmiyasqgn
viqegthlv**tllivqalihaffhivkmvyvfqhtfvlqlhl*lqllpqlllqllpqll
hqpllqplpqlqlqlqlhtlxls

Frame B:
llaywl*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---nrfwlscnxkkl****smyh*sl*ssyrlll**v**l*cm*ccrylyyk*fmlpkgm
*skreptlfnkpy*lykh*smhffil*kwcmysnihlysnsicnsncypncysncypncy
tnrysnrypnsnynsnsihcxsv

Frame C:
cwptgyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---IGFGCLAXPKNCNDNDPCTTDHCDPAIGCYYDKFDNCDACNAVDTCITNDLCFPREC
NPRGNPPCLINPINCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVT
PTVTPTVTPTPTTTPTPYTAPQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC347 (CHC347Q) /CSM/CH/CHC3-B/CHC347Q.Seq.d/                        823   0.0
SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/                        797   0.0
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        797   0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        797   0.0
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/                        797   0.0
CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                        797   0.0
CFC681 (CFC681Q) /CSM/CF/CFC6-D/CFC681Q.Seq.d/                        797   0.0
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/                        797   0.0
AFJ801 (AFJ801Q) /CSM/AF/AFJ8-A/AFJ801Q.Seq.d/                        797   0.0
CHB865 (CHB865Q) /CSM/CH/CHB8-C/CHB865Q.Seq.d/                        791   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   6e-09  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   1e-06  12
CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   4e-06  3
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    40   8e-06  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   8e-06  10
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    34   1e-05  11
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   1e-05  17
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12 section 5 of 9 of the complete sequence.    34   4e-05  12
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   7e-05  13
AC124744|AC124744.2 Mus musculus chromosome 13 clone RP23-223E16, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   2e-04  6
dna update 2004. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                224   2e-57
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 90   4e-17
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 71   2e-11
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 67   3e-10
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 61   3e-08
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    60   3e-08
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 60   6e-08
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    57   5e-07
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    53   7e-06
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    52   9e-06
protein update 2009. 3.29
PSORT 

 psg: 0.52  gvh: 0.28  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHC347 is nuc
5' end seq. ID CHC347F
5' end seq. 
>CHC347F.Seq
ACTGTTGGCCTACTGGTTATGAACATTTAATAAATAAAACACAATAAAAATCAATATTAT
TTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAAT
TGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAANNNNNN
NNNN
Length of 5' end seq. 184
3' end seq. ID CHC347Z
3' end seq. 
>CHC347Z.Seq
NNNNNNNNNNAAATAGGTTTTGGTTGTCTTGCAATNCCAAAAAATTGTAATGATAATGAT
CCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAAT
TGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGGAA
TGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGAT
CCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTCCA
ACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTT
ACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCATACACT
GCNCCTCAGTG
Length of 3' end seq. 431
Connected seq. ID CHC347P
Connected seq. 
>CHC347P.Seq
ACTGTTGGCCTACTGGTTATGAACATTTAATAAATAAAACACAATAAAAATCAATATTAT
TTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAAT
TGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA------
----AAATAGGTTTTGGTTGTCTTGCAATNCCAAAAAATTGTAATGATAATGATCCATGT
ACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGATAATTGTGAT
GCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTAAT
CCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCATGC
ATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTCCA
TCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCA
ACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCATACACTGCNCCT
CAGTG
Length of connected seq. 595
Full length Seq ID -
Full length Seq. -
Length of full length seq. -