AFG257
Library AF
(Link to library)
Clone ID AFG257
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFG257P
(Link to Original site)
Representative DNA sequence
>AFG257 (AFG257Q) /CSM/AF/AFG2-C/AFG257Q.Seq.d/
ATTTTTTTCTCACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTC
TTTATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCAT
TTTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTNTCACTGGTAAAACCATCAC
ATTGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGA
AGGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCG
TNCTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAAG
AGGNGGTATGCAAATNTTTGTAAAAACTNTCACTGGTAAAACCATCACCTTANAGGTTGA
AGGTAGNGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACC
AGATCANCAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTACTNTCTCTGA
CTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGNGGTNTGCA
AATNTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAA
CATTGAAAATGTTAAAGCCAAAATCCAGGACAAAGAAGGTNTNCCNCCNGATCACCANAG
ATTAATTTTCGCTGGTAAACAATTAGAAGANGGGCGNACTCTNNTGACTACACATTCAAA
AGAACCNCNCTCCNTTAGTTTTNAAATNAAAGGGGGATGCAAATTTTTGTTAAACNTTCN
CTGNTAAAACCXXXXXXXXXXTTAAAANNNNCATTGGTAAGCCCTACACCTNAANGGTTG
GAAGGGAGGTANTACNTTGAAAATGGTAAAAGCCAGAATTCCAAGAACAAAGNAGGTATC
CCACCAGATCCANCAAAGGATTAATTTTTNGNTGGTAAAANAATTAGAAAGAATGGTCGT
ACTCTCTCTGACTACAACATNCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAG
AGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTCGA
AGGTAGTGATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACC
AGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGA
TTACAACATCCAAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCA
AATCTTTGTAAAAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAA
CATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCA
AAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAA
AACTTTAACAGGTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGC
TGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCAC
TCTCCATTTAGTTCTCAGATTAAGAGGGGTAACTAAGTTT
sequence update 2001. 6. 2
Translated Amino Acid sequence
iffspyffvnsnn***ffkffiflni*kfffsfvyyfffhfyilinyanfc*nxhw*nhh
igs*r*xqh*kcqg*nsrqrrystrstkinlcw*tirrwsxsf*lqhskgihspfssxik
rxyanxcknxhw*nhhlxg*r*x*h*kc*s*nsrqrryptrsxkinfrw*tirxwsyxl*
lqhskgihsplgsqikrxxanxcknldw*nyhlgsrrf*qh*kc*sqnpgqrrxxxxspx
infrw*tirrxaxsxdytfkrtxlx*FXNXRGMQIFVKXSLXK---

---LKXXLVSPTPXXLEGRXYXENGKSQNSKNKXGIPPDPXKD*fxxgkxirkngrtlsd
ynxpkrihspfsfkikrwyanlc*nshw*nhhlgsrr***h*kcqsqnprqrrystrstt
shfrw*tirrwpysl*lqhpkrihspfssqikrwyanlcknldw*dhhigsrrf**h*kc
qsqnsrqrrystrstkinfrw*tirrwsysl*lqyskgihspfssqikrwyanlc*nfnr
*nyhlgsrr***h*kc*sqnprqrrystrsttshfrw*tirrwsysl*lqhskgihspfs
sqikrgn*v


Translated Amino Acid sequence (All Frames)
Frame A:
iffspyffvnsnn***ffkffiflni*kfffsfvyyfffhfyilinyanfc*nxhw*nhh
igs*r*xqh*kcqg*nsrqrrystrstkinlcw*tirrwsxsf*lqhskgihspfssxik
rxyanxcknxhw*nhhlxg*r*x*h*kc*s*nsrqrryptrsxkinfrw*tirxwsyxl*
lqhskgihsplgsqikrxxanxcknldw*nyhlgsrrf*qh*kc*sqnpgqrrxxxxspx
infrw*tirrxaxsxdytfkrtxlx*FXNXRGMQIFVKXSLXK---

---LKXXLVSPTPXXLEGRXYXENGKSQNSKNKXGIPPDPXKD*fxxgkxirkngrtlsd
ynxpkrihspfsfkikrwyanlc*nshw*nhhlgsrr***h*kcqsqnprqrrystrstt
shfrw*tirrwpysl*lqhpkrihspfssqikrwyanlcknldw*dhhigsrrf**h*kc
qsqnsrqrrystrstkinfrw*tirrwsysl*lqyskgihspfssqikrwyanlc*nfnr
*nyhlgsrr***h*kc*sqnprqrrystrsttshfrw*tirrwsysl*lqhskgihspfs
sqikrgn*v

Frame B:
ffshhifl*iviinnnflnslff*tyknfffplyiiffsifty*limqifvktxtgktit
levegxdnienvkakiqdkegippdqqrlifagkqledgrxlsdyniqkestlhlvlxlr
ggmqxfvktxtgktitlxvegxdnienvkakiqdkegippdxqrlifagkqlexgrtxsd
yniqkestlhlvlrlrggxqxfvktltgktitlevegsdnienvkakiqdkegxppdhxr
lifagkqlexgrtlxtthskepxsxsfxxkggckfllnxxx*n---

---*xxhw*alhlxgwkggxtlkmvkariprtkxvshqixqrinfxxvkxlermvvlslt
ttxqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqr
lifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienv
kakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltg
ktitlevegsdnienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlv
lrlrgvtkf

Frame C:
ffltiffck***liiif*ilyffkhikiffflcilfffpflhin*lckfllklslvkpsh
wklkvxttlkmsrlkfktkkvfhqinkd*sllvnn*kmvvlflittfkrnplsi*flx*e
xvckxl*klslvkpspxrlkvxitlkmlklkfktkkvshqixkd*fslvnn*xmvvlslt
ttfkrnplstwfsd*exvckxl*kp*lvklspwkskvlttlkmlkpksrtkkvxxxitxd
*fslvnn*kxgxlx*lhiqknxxplvxkxkgdanfc*tfxxkt---

---kxxigkpytxxvgrevxx*kw*kpefqeqxryptrsxkglifxw*xn*kewsysl*l
qhxkknplsi*f*d*evvcksllklslvkpspwkskvvitlkmskpksktkkvfhqinnv
sfslvnn*kmavlslittskknplsi*fsd*evvcksl*kp*lvrpshwkskvlitlkms
kpkfktkkvfhqinkd*fslvnn*kmvvlslttifkrnplsi*fsd*evvcksllkl*qv
klspwkskvvitlkmlkpksktkkvfhqinnvsfslvnn*kmvvlslittfkrnplsi*f
sd*eg*ls

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFG257 (AFG257Q) /CSM/AF/AFG2-C/AFG257Q.Seq.d/ 2966 0.0
SFD385 (SFD385Q) /CSM/SF/SFD3-D/SFD385Q.Seq.d/ 1495 0.0
CFK385 (CFK385Q) /CSM/CF/CFK3-D/CFK385Q.Seq.d/ 1493 0.0
AFE236 (AFE236Q) /CSM/AF/AFE2-B/AFE236Q.Seq.d/ 1479 0.0
CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/ 1467 0.0
CFK313 (CFK313Q) /CSM/CF/CFK3-A/CFK313Q.Seq.d/ 1463 0.0
VFI435 (VFI435Q) /CSM/VF/VFI4-B/VFI435Q.Seq.d/ 1461 0.0
AFF229 (AFF229Q) /CSM/AF/AFF2-B/AFF229Q.Seq.d/ 1421 0.0
AFO679 (AFO679Q) /CSM/AF/AFO6-D/AFO679Q.Seq.d/ 1413 0.0
CFG825 (CFG825Q) /CSM/CF/CFG8-B/CFG825Q.Seq.d/ 1407 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 1439 0.0 4
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 898 0.0 6
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 890 0.0 6
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 890 0.0 6
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 785 0.0 4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 850 0.0 4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 850 0.0 4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 632 0.0 4
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 337 0.0 7
AB122067|AB122067.1 Crassostrea gigas mRNA for polyubiquitin, complete cds. 137 0.0 14
dna update 2004. 5. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 794 0.0
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 793 0.0
AF285161_1(AF285161|pid:none) Mus musculus cell-line C3H/He poly... 790 0.0
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD... 789 0.0
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822... 789 0.0
BC168051_1(BC168051|pid:none) Xenopus tropicalis cDNA clone MGC:... 788 0.0
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 788 0.0
BC006680_1(BC006680|pid:none) Mus musculus ubiquitin C, mRNA (cD... 788 0.0
BC021837_1(BC021837|pid:none) Mus musculus ubiquitin C, mRNA (cD... 788 0.0
AB122067_1(AB122067|pid:none) Crassostrea gigas mRNA for polyubi... 788 0.0
protein update 2009. 4.20
PSORT

psg: 0.76 gvh: 0.53 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
24.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for AFG257 is cyt

5' end seq. ID AFG257F
5' end seq.
>AFG257F.Seq
ATTTTTTTCTCACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTC
TTTATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCAT
TTTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTNTCACTGGTAAAACCATCAC
ATTGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGA
AGGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCG
TNCTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAAG
AGGNGGTATGCAAATNTTTGTAAAAACTNTCACTGGTAAAACCATCACCTTANAGGTTGA
AGGTAGNGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACC
AGATCANCAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTACTNTCTCTGA
CTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGNGGTNTGCA
AATNTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAA
CATTGAAAATGTTAAAGCCAAAATCCAGGACAAAGAAGGTNTNCCNCCNGATCACCANAG
ATTAATTTTCGCTGGTAAACAATTAGAAGANGGGCGNACTCTNNTGACTACACATTCAAA
AGAACCNCNCTCCNTTAGTTTTNAAATNAAAGGGGGATGCAAATTTTTGTTAAACNTTCN
CTGNTAAAACC----------
Length of 5' end seq. 851
3' end seq. ID AFG257Z
3' end seq.
>AFG257Z.Seq
----------TTAAAANNNNCATTGGTAAGCCCTACACCTNAANGGTTGGAAGGGAGGTA
NTACNTTGAAAATGGTAAAAGCCAGAATTCCAAGAACAAAGNAGGTATCCCACCAGATCC
ANCAAAGGATTAATTTTTNGNTGGTAAAANAATTAGAAAGAATGGTCGTACTCTCTCTGA
CTACAACATNCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGGTATGC
AAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTCGAAGGTAGTGATA
ACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAAC
GTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCC
AAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAA
AAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATG
TCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCG
CTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAG
GTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAA
TCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAAT
TAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAG
TTCTCAGATTAAGAGGGGTAACTAAGTTT
Length of 3' end seq. 919
Connected seq. ID AFG257P
Connected seq.
>AFG257P.Seq
ATTTTTTTCTCACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTC
TTTATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCAT
TTTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTNTCACTGGTAAAACCATCAC
ATTGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGA
AGGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCG
TNCTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAAG
AGGNGGTATGCAAATNTTTGTAAAAACTNTCACTGGTAAAACCATCACCTTANAGGTTGA
AGGTAGNGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACC
AGATCANCAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTACTNTCTCTGA
CTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGNGGTNTGCA
AATNTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAA
CATTGAAAATGTTAAAGCCAAAATCCAGGACAAAGAAGGTNTNCCNCCNGATCACCANAG
ATTAATTTTCGCTGGTAAACAATTAGAAGANGGGCGNACTCTNNTGACTACACATTCAAA
AGAACCNCNCTCCNTTAGTTTTNAAATNAAAGGGGGATGCAAATTTTTGTTAAACNTTCN
CTGNTAAAACC----------TTAAAANNNNCATTGGTAAGCCCTACACCTNAANGGTTG
GAAGGGAGGTANTACNTTGAAAATGGTAAAAGCCAGAATTCCAAGAACAAAGNAGGTATC
CCACCAGATCCANCAAAGGATTAATTTTTNGNTGGTAAAANAATTAGAAAGAATGGTCGT
ACTCTCTCTGACTACAACATNCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAG
AGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTCGA
AGGTAGTGATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACC
AGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGA
TTACAACATCCAAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCA
AATCTTTGTAAAAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAA
CATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCA
AAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAA
AACTTTAACAGGTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGC
TGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCAC
TCTCCATTTAGTTCTCAGATTAAGAGGGGTAACTAAGTTT
Length of connected seq. 1770
Full length Seq ID -
Full length Seq. -
Length of full length seq. -